mRNA_Ecto-sp13_S_contig16812.4880.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: D8LIM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM0_ECTSI) HSP 1 Score: 546 bits (1406), Expect = 9.500e-185 Identity = 324/378 (85.71%), Postives = 326/378 (86.24%), Query Frame = 1
Query: 4 IWMCYIPGRVQNWKIGKLKAKVGAERKKLEKAEADEXXXXXXXXXXEASRSVRRKLLEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRERAERDQRGGLFFAGSSGVGGDYAKFEANFSRALATGDTADAVCAKSTGGGAFYTSNRITNNLGAGGXXG--------------------LTGLDSTRAVVVSDDLTATXXXXXXXXXRARKGFSVNLGGFSSTPAA-SPSPATATGVDGRGGGKSGLTATQRTTSRS 1074
IWMCYIPGRVQNWKIGKLKAKVGAERKKLEKAEADEXXXXXXXXXXEASRSVRRKLLEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRERAERDQRGGL FAGSSGVGGDYAKFEANFSRAL TGDTADAV AKS G XX L GLD+TRAVVVS+DLTAT XXXXXXRARKGFSVNLGGFSSTPAA SPSPATATG DGR G K GLTATQRTTSRS
Sbjct: 446 IWMCYIPGRVQNWKIGKLKAKVGAERKKLEKAEADEXXXXXXXXXXEASRSVRRKLLEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRERAERDQRGGLVFAGSSGVGGDYAKFEANFSRALTTGDTADAVFAKSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMGLDATRAVVVSEDLTATTPTXXXXXXRARKGFSVNLGGFSSTPAAASPSPATATGADGRRGAKPGLTATQRTTSRS 823
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: A0A6H5K7Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Q9_9PHAE) HSP 1 Score: 396 bits (1017), Expect = 6.330e-134 Identity = 233/280 (83.21%), Postives = 237/280 (84.64%), Query Frame = 1
Query: 226 MIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRERAERDQRGGLFFAGSSGVGGDYAKFEANFSRALATGDTADAVCAKSTGGGAFYTSNRITNNLGAGGXXGLTGLDSTRAVVVSDDLTATXXXXXXXXX-RARKGFSVNLGGFSSTPAASPSPATATGVDGRGGGKSGLTATQRT 1062
MIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAM+NNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRAL RERAERDQRGGL FAGSSGVGGDYAKFEANFSRALATGDTADAVCAK T GGAFY++NR XX XXXXXXXXX RARKGFSVNL AASP PATATGVDGRGGG SG+TATQRT
Sbjct: 1 MIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMVNNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALHRERAERDQRGGLVFAGSSGVGGDYAKFEANFSRALATGDTADAVCAKRTAGGAFYSTNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRARKGFSVNL-------AASPCPATATGVDGRGGGTSGVTATQRT 273
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: A0A835YQ07_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ07_9STRA) HSP 1 Score: 208 bits (529), Expect = 1.260e-55 Identity = 129/261 (49.43%), Postives = 166/261 (63.60%), Query Frame = 1
Query: 7 WMCYIPGRVQNWKIGKLKAKVGAERKKLE-------KAEADEXXXXXXXXXXEASRSVRRKLLEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSERWWPA--DVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRER-----AERDQRGGLFFAGS-SGVGGDYAKFEANFSRALATG 744
WM Y+ R+ W+ G+LK V ++ +LE + ADE +A R+ +R+LL+EA D LWEEA L +Y D+FDDYTMSLIQFGYV FS AFPLAPLLA++NNLVQ RVDA K+C+TR GIGVWDNVLE+M+++AV+TNCAL+GVTS W +S ++LVVV EH++LFLKYW+ES +PR P +V RALQRE A +++R G G SG GD + N R ATG
Sbjct: 1415 WMTYVYHRIGQWRQGRLKFGVKRDKSELEYGATEGPQGLADEVEDPQF----QAKRAWKRQLLKEASDPLWEEAELFDY---DIFDDYTMSLIQFGYVTFFSMAFPLAPLLALLNNLVQIRVDAFKLCRTR---------GIGVWDNVLEIMTILAVVTNCALVGVTSTIVWQLLPPMSSTYKVLVVVAVEHVLLFLKYWVESLIPRTPERVSRALQREHRRLQEARQEKRKGSIGRGRMSGSFGDTVR--RNHMRLSATG 1657
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: A0A7S1XIG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XIG7_9STRA) HSP 1 Score: 176 bits (445), Expect = 2.750e-45 Identity = 86/173 (49.71%), Postives = 127/173 (73.41%), Query Frame = 1
Query: 148 SRSVRRKLLEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSER---WWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRERAERDQR 657
SR RKL++EA +WEE+L+ Y + FDDY+ SL+QFGYV FS P+ P++A++NNL+ R+DA+K+C+TR RP+A+++ G+GVW NVL+V++V+ +IT CAL VTS R W+P ++R +L++VV EH ILF KYWL+SS+P VP V RAL+ ER+++ +R
Sbjct: 426 SRLRFRKLIDEARSPVWEESLMPHY---EPFDDYSKSLLQFGYVVCFSTVLPITPIIALLNNLLMIRLDAYKLCRTRARPLAVRASGMGVWANVLQVLTVVGIITGCALTAVTSTRMRTWFP-HINRTGLVLIMVVVEHFILFFKYWLQSSMPTVPRSVCRALELERSQQQKR 594
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: H3GJM8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJM8_PHYRM) HSP 1 Score: 152 bits (384), Expect = 1.340e-39 Identity = 82/159 (51.57%), Postives = 111/159 (69.81%), Query Frame = 1
Query: 172 LEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTS---ERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRER 639
LE+A D WEEA LK Y D F+DYT L+QFGYV+ FS AFPLAPLLA++NNL++ R DA K+C TR+RP+A K+ GIGVW +VL++MSV+AV+TNC + ++ ER +P+ V+ ++ +V EH +L +K WL VP VP V L+RER
Sbjct: 97 LEQASDRAWEEAGLKRY---DTFEDYTEMLVQFGYVSFFSLAFPLAPLLALLNNLLELRTDAFKLCHTRQRPLAHKASGIGVWLHVLQIMSVLAVLTNCFHLAYSTSLLERAFPS-VTGTQKVWIVFGIEHSLLLVKVWLACVVPSVPRDVAERLRRER 251
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: A0A6A3TFL4_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3TFL4_9STRA) HSP 1 Score: 151 bits (381), Expect = 2.360e-39 Identity = 80/159 (50.31%), Postives = 112/159 (70.44%), Query Frame = 1
Query: 172 LEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTS---ERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRER 639
LE+A D W+EA LK Y D F+DYT L+QFGYV+ FS AFPLAPLLA++NN+++ R DA K+C TR+RP+A K+ GIGVW +VL+VMSV+AV+TNC + ++ ER P+ V+ ++ +V EH++L +K W + VP VP +V L+RER
Sbjct: 97 LEQASDRAWKEAGLKHY---DTFEDYTEMLVQFGYVSFFSLAFPLAPLLALLNNVLELRTDAFKLCHTRQRPLAHKASGIGVWLHVLQVMSVLAVLTNCFNLAYSTSLLERALPS-VTPTQKVWIVFGIEHLMLLIKVWFDCVVPSVPREVSERLRRER 251
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: W2R7Z5_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2R7Z5_PHYPN) HSP 1 Score: 158 bits (399), Expect = 1.180e-38 Identity = 82/159 (51.57%), Postives = 115/159 (72.33%), Query Frame = 1
Query: 172 LEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTS---ERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRER 639
LE+A D WEEA LK+Y D F+DYT L+QFGYV+ FS AFPLAPLLA++NNL++ R DA K+C+TR+RP+A K+ GIGVW +VL++MSV+AV+TNC + ++ ER +P+ V+ ++ +V EH++L +K WL VP VP V +L+RER
Sbjct: 636 LEQASDRAWEEAGLKQY---DTFEDYTEMLVQFGYVSFFSLAFPLAPLLALLNNLIEMRTDAFKLCQTRQRPLAHKASGIGVWLHVLQIMSVLAVLTNCFHLAYSTSLLERAFPS-VTATEKVWIVFGIEHLLLLIKVWLACVVPSVPRDVNESLRRER 790
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: V9F146_PHYPR (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9F146_PHYPR) HSP 1 Score: 158 bits (399), Expect = 1.580e-38 Identity = 82/159 (51.57%), Postives = 115/159 (72.33%), Query Frame = 1
Query: 172 LEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTS---ERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRER 639
LE+A D WEEA LK+Y D F+DYT L+QFGYV+ FS AFPLAPLLA++NNL++ R DA K+C+TR+RP+A K+ GIGVW +VL++MSV+AV+TNC + ++ ER +P+ V+ ++ +V EH++L +K WL VP VP V +L+RER
Sbjct: 896 LEQASDRAWEEAGLKQY---DTFEDYTEMLVQFGYVSFFSLAFPLAPLLALLNNLIEMRTDAFKLCQTRQRPLAHKASGIGVWLHVLQIMSVLAVLTNCFHLAYSTSLLERAFPS-VTATEKVWIVFGIEHLLLLIKVWLACVVPSVPRDVNESLRRER 1050
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: A0A7S2EGT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EGT0_9STRA) HSP 1 Score: 157 bits (397), Expect = 3.280e-38 Identity = 87/221 (39.37%), Postives = 137/221 (61.99%), Query Frame = 1
Query: 16 YIPGRVQNWKIGKLKAKVGAERKKLEKAEADEXXXXXXXXXXEA----SRSV-RRKLLEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSER--WWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRERAERDQR 657
Y P + W+I + K+ E + LEK ++ E +R + +R LLE+A +WEE +L+++ D F +Y +++IQF YV FS P+ PL + N L+ R+DA+K+C+ RRRP+A K+GGIGVW+NVL +++V+AV+TNC+L+ +TS + W + + +VV EHI+LF+KY ++SS PR PL VQ AL++ER + +R
Sbjct: 1303 YFPLLIHRWRIYCERLKLRDELRCLEKTNEEDADQTGPKYSTEVRDQRNRLINKRLLLEQAQSSVWEEMMLRQH---DSFPEYVLAVIQFAYVTCFSVVLPITPLFCLFNQLLMMRLDAYKLCRGRRRPLAQKTGGIGVWENVLHIVTVVAVLTNCSLVALTSSQFVWLGEKLGQLGLFALVVGWEHIMLFIKYLMQSSFPRYPLSVQDALKKERYQISRR 1520
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: A0A225WQS3_9STRA (Anoctamin protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WQS3_9STRA) HSP 1 Score: 155 bits (393), Expect = 3.780e-38 Identity = 84/159 (52.83%), Postives = 111/159 (69.81%), Query Frame = 1
Query: 172 LEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTS---ERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRER 639
LE+A D WEEA LK+Y D F+DYT L+QFGYV+ FS AFPLAPLLA++NNL + R DA K+C TR+RP+A K+ GIGVW +VL++MSVIAV+TNC + ++ ER P V+ ++ +V EH++L LK WL VP +P +V AL RER
Sbjct: 489 LEQASDRAWEEAGLKQY---DTFEDYTEMLVQFGYVSFFSLAFPLAPLLALLNNLFELRADAFKLCHTRQRPLAHKASGIGVWLHVLQIMSVIAVLTNCFHLAYSTSLLERALPR-VTATQKVWIVFGIEHLLLVLKVWLACVVPSIPREVTEALHRER 643 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16812.4880.1 >prot_Ecto-sp13_S_contig16812.4880.1 ID=prot_Ecto-sp13_S_contig16812.4880.1|Name=mRNA_Ecto-sp13_S_contig16812.4880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=401bp MCYIPGRVQNWKIGKLKAKVGAERKKLEKAEADEAAGGGSGGAGEASRSVback to top mRNA from alignment at Ecto-sp13_S_contig16812:248..3824+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16812.4880.1 ID=mRNA_Ecto-sp13_S_contig16812.4880.1|Name=mRNA_Ecto-sp13_S_contig16812.4880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3577bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16812:248..3824+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16812:248..3824+ >mRNA_Ecto-sp13_S_contig16812.4880.1 ID=mRNA_Ecto-sp13_S_contig16812.4880.1|Name=mRNA_Ecto-sp13_S_contig16812.4880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16812:248..3824+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |