mRNA_Ecto-sp13_S_contig16812.4880.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16812.4880.1
Unique NamemRNA_Ecto-sp13_S_contig16812.4880.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: D8LIM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIM0_ECTSI)

HSP 1 Score: 546 bits (1406), Expect = 9.500e-185
Identity = 324/378 (85.71%), Postives = 326/378 (86.24%), Query Frame = 1
Query:    4 IWMCYIPGRVQNWKIGKLKAKVGAERKKLEKAEADEXXXXXXXXXXEASRSVRRKLLEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRERAERDQRGGLFFAGSSGVGGDYAKFEANFSRALATGDTADAVCAKSTGGGAFYTSNRITNNLGAGGXXG--------------------LTGLDSTRAVVVSDDLTATXXXXXXXXXRARKGFSVNLGGFSSTPAA-SPSPATATGVDGRGGGKSGLTATQRTTSRS 1074
            IWMCYIPGRVQNWKIGKLKAKVGAERKKLEKAEADEXXXXXXXXXXEASRSVRRKLLEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRERAERDQRGGL FAGSSGVGGDYAKFEANFSRAL TGDTADAV AKS G                  XX                     L GLD+TRAVVVS+DLTAT   XXXXXXRARKGFSVNLGGFSSTPAA SPSPATATG DGR G K GLTATQRTTSRS
Sbjct:  446 IWMCYIPGRVQNWKIGKLKAKVGAERKKLEKAEADEXXXXXXXXXXEASRSVRRKLLEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRERAERDQRGGLVFAGSSGVGGDYAKFEANFSRALTTGDTADAVFAKSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMGLDATRAVVVSEDLTATTPTXXXXXXRARKGFSVNLGGFSSTPAAASPSPATATGADGRRGAKPGLTATQRTTSRS 823          
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: A0A6H5K7Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Q9_9PHAE)

HSP 1 Score: 396 bits (1017), Expect = 6.330e-134
Identity = 233/280 (83.21%), Postives = 237/280 (84.64%), Query Frame = 1
Query:  226 MIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRERAERDQRGGLFFAGSSGVGGDYAKFEANFSRALATGDTADAVCAKSTGGGAFYTSNRITNNLGAGGXXGLTGLDSTRAVVVSDDLTATXXXXXXXXX-RARKGFSVNLGGFSSTPAASPSPATATGVDGRGGGKSGLTATQRT 1062
            MIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAM+NNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRAL RERAERDQRGGL FAGSSGVGGDYAKFEANFSRALATGDTADAVCAK T GGAFY++NR         XX                    XXXXXXXXX RARKGFSVNL       AASP PATATGVDGRGGG SG+TATQRT
Sbjct:    1 MIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMVNNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALHRERAERDQRGGLVFAGSSGVGGDYAKFEANFSRALATGDTADAVCAKRTAGGAFYSTNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRARKGFSVNL-------AASPCPATATGVDGRGGGTSGVTATQRT 273          
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: A0A835YQ07_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ07_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.260e-55
Identity = 129/261 (49.43%), Postives = 166/261 (63.60%), Query Frame = 1
Query:    7 WMCYIPGRVQNWKIGKLKAKVGAERKKLE-------KAEADEXXXXXXXXXXEASRSVRRKLLEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSERWWPA--DVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRER-----AERDQRGGLFFAGS-SGVGGDYAKFEANFSRALATG 744
            WM Y+  R+  W+ G+LK  V  ++ +LE       +  ADE          +A R+ +R+LL+EA D LWEEA L +Y   D+FDDYTMSLIQFGYV  FS AFPLAPLLA++NNLVQ RVDA K+C+TR         GIGVWDNVLE+M+++AV+TNCAL+GVTS   W     +S   ++LVVV  EH++LFLKYW+ES +PR P +V RALQRE      A +++R G    G  SG  GD  +   N  R  ATG
Sbjct: 1415 WMTYVYHRIGQWRQGRLKFGVKRDKSELEYGATEGPQGLADEVEDPQF----QAKRAWKRQLLKEASDPLWEEAELFDY---DIFDDYTMSLIQFGYVTFFSMAFPLAPLLALLNNLVQIRVDAFKLCRTR---------GIGVWDNVLEIMTILAVVTNCALVGVTSTIVWQLLPPMSSTYKVLVVVAVEHVLLFLKYWVESLIPRTPERVSRALQREHRRLQEARQEKRKGSIGRGRMSGSFGDTVR--RNHMRLSATG 1657          
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: A0A7S1XIG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XIG7_9STRA)

HSP 1 Score: 176 bits (445), Expect = 2.750e-45
Identity = 86/173 (49.71%), Postives = 127/173 (73.41%), Query Frame = 1
Query:  148 SRSVRRKLLEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSER---WWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRERAERDQR 657
            SR   RKL++EA   +WEE+L+  Y   + FDDY+ SL+QFGYV  FS   P+ P++A++NNL+  R+DA+K+C+TR RP+A+++ G+GVW NVL+V++V+ +IT CAL  VTS R   W+P  ++R   +L++VV EH ILF KYWL+SS+P VP  V RAL+ ER+++ +R
Sbjct:  426 SRLRFRKLIDEARSPVWEESLMPHY---EPFDDYSKSLLQFGYVVCFSTVLPITPIIALLNNLLMIRLDAYKLCRTRARPLAVRASGMGVWANVLQVLTVVGIITGCALTAVTSTRMRTWFP-HINRTGLVLIMVVVEHFILFFKYWLQSSMPTVPRSVCRALELERSQQQKR 594          
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: H3GJM8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJM8_PHYRM)

HSP 1 Score: 152 bits (384), Expect = 1.340e-39
Identity = 82/159 (51.57%), Postives = 111/159 (69.81%), Query Frame = 1
Query:  172 LEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTS---ERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRER 639
            LE+A D  WEEA LK Y   D F+DYT  L+QFGYV+ FS AFPLAPLLA++NNL++ R DA K+C TR+RP+A K+ GIGVW +VL++MSV+AV+TNC  +  ++   ER +P+ V+   ++ +V   EH +L +K WL   VP VP  V   L+RER
Sbjct:   97 LEQASDRAWEEAGLKRY---DTFEDYTEMLVQFGYVSFFSLAFPLAPLLALLNNLLELRTDAFKLCHTRQRPLAHKASGIGVWLHVLQIMSVLAVLTNCFHLAYSTSLLERAFPS-VTGTQKVWIVFGIEHSLLLVKVWLACVVPSVPRDVAERLRRER 251          
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: A0A6A3TFL4_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3TFL4_9STRA)

HSP 1 Score: 151 bits (381), Expect = 2.360e-39
Identity = 80/159 (50.31%), Postives = 112/159 (70.44%), Query Frame = 1
Query:  172 LEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTS---ERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRER 639
            LE+A D  W+EA LK Y   D F+DYT  L+QFGYV+ FS AFPLAPLLA++NN+++ R DA K+C TR+RP+A K+ GIGVW +VL+VMSV+AV+TNC  +  ++   ER  P+ V+   ++ +V   EH++L +K W +  VP VP +V   L+RER
Sbjct:   97 LEQASDRAWKEAGLKHY---DTFEDYTEMLVQFGYVSFFSLAFPLAPLLALLNNVLELRTDAFKLCHTRQRPLAHKASGIGVWLHVLQVMSVLAVLTNCFNLAYSTSLLERALPS-VTPTQKVWIVFGIEHLMLLIKVWFDCVVPSVPREVSERLRRER 251          
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: W2R7Z5_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2R7Z5_PHYPN)

HSP 1 Score: 158 bits (399), Expect = 1.180e-38
Identity = 82/159 (51.57%), Postives = 115/159 (72.33%), Query Frame = 1
Query:  172 LEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTS---ERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRER 639
            LE+A D  WEEA LK+Y   D F+DYT  L+QFGYV+ FS AFPLAPLLA++NNL++ R DA K+C+TR+RP+A K+ GIGVW +VL++MSV+AV+TNC  +  ++   ER +P+ V+   ++ +V   EH++L +K WL   VP VP  V  +L+RER
Sbjct:  636 LEQASDRAWEEAGLKQY---DTFEDYTEMLVQFGYVSFFSLAFPLAPLLALLNNLIEMRTDAFKLCQTRQRPLAHKASGIGVWLHVLQIMSVLAVLTNCFHLAYSTSLLERAFPS-VTATEKVWIVFGIEHLLLLIKVWLACVVPSVPRDVNESLRRER 790          
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: V9F146_PHYPR (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9F146_PHYPR)

HSP 1 Score: 158 bits (399), Expect = 1.580e-38
Identity = 82/159 (51.57%), Postives = 115/159 (72.33%), Query Frame = 1
Query:  172 LEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTS---ERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRER 639
            LE+A D  WEEA LK+Y   D F+DYT  L+QFGYV+ FS AFPLAPLLA++NNL++ R DA K+C+TR+RP+A K+ GIGVW +VL++MSV+AV+TNC  +  ++   ER +P+ V+   ++ +V   EH++L +K WL   VP VP  V  +L+RER
Sbjct:  896 LEQASDRAWEEAGLKQY---DTFEDYTEMLVQFGYVSFFSLAFPLAPLLALLNNLIEMRTDAFKLCQTRQRPLAHKASGIGVWLHVLQIMSVLAVLTNCFHLAYSTSLLERAFPS-VTATEKVWIVFGIEHLLLLIKVWLACVVPSVPRDVNESLRRER 1050          
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: A0A7S2EGT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EGT0_9STRA)

HSP 1 Score: 157 bits (397), Expect = 3.280e-38
Identity = 87/221 (39.37%), Postives = 137/221 (61.99%), Query Frame = 1
Query:   16 YIPGRVQNWKIGKLKAKVGAERKKLEKAEADEXXXXXXXXXXEA----SRSV-RRKLLEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTSER--WWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRERAERDQR 657
            Y P  +  W+I   + K+  E + LEK   ++          E     +R + +R LLE+A   +WEE +L+++   D F +Y +++IQF YV  FS   P+ PL  + N L+  R+DA+K+C+ RRRP+A K+GGIGVW+NVL +++V+AV+TNC+L+ +TS +  W    + +     +VV  EHI+LF+KY ++SS PR PL VQ AL++ER +  +R
Sbjct: 1303 YFPLLIHRWRIYCERLKLRDELRCLEKTNEEDADQTGPKYSTEVRDQRNRLINKRLLLEQAQSSVWEEMMLRQH---DSFPEYVLAVIQFAYVTCFSVVLPITPLFCLFNQLLMMRLDAYKLCRGRRRPLAQKTGGIGVWENVLHIVTVVAVLTNCSLVALTSSQFVWLGEKLGQLGLFALVVGWEHIMLFIKYLMQSSFPRYPLSVQDALKKERYQISRR 1520          
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Match: A0A225WQS3_9STRA (Anoctamin protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WQS3_9STRA)

HSP 1 Score: 155 bits (393), Expect = 3.780e-38
Identity = 84/159 (52.83%), Postives = 111/159 (69.81%), Query Frame = 1
Query:  172 LEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLAPLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVITNCALIGVTS---ERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPLKVQRALQRER 639
            LE+A D  WEEA LK+Y   D F+DYT  L+QFGYV+ FS AFPLAPLLA++NNL + R DA K+C TR+RP+A K+ GIGVW +VL++MSVIAV+TNC  +  ++   ER  P  V+   ++ +V   EH++L LK WL   VP +P +V  AL RER
Sbjct:  489 LEQASDRAWEEAGLKQY---DTFEDYTEMLVQFGYVSFFSLAFPLAPLLALLNNLFELRADAFKLCHTRQRPLAHKASGIGVWLHVLQIMSVIAVLTNCFHLAYSTSLLERALPR-VTATQKVWIVFGIEHLLLVLKVWLACVVPSIPREVTEALHRER 643          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16812.4880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIM0_ECTSI9.500e-18585.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7Q9_9PHAE6.330e-13483.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YQ07_9STRA1.260e-5549.43Calcium-activated chloride channel-domain-containi... [more]
A0A7S1XIG7_9STRA2.750e-4549.71Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
H3GJM8_PHYRM1.340e-3951.57Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3TFL4_9STRA2.360e-3950.31Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]
W2R7Z5_PHYPN1.180e-3851.57Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
V9F146_PHYPR1.580e-3851.57Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A7S2EGT0_9STRA3.280e-3839.37Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A225WQS3_9STRA3.780e-3852.83Anoctamin protein n=1 Tax=Phytophthora megakarya T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16812contigEcto-sp13_S_contig16812:248..3824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score546.6
Seed ortholog evalue9.8e-153
Seed eggNOG ortholog2880.D8LIM0
Model size1212
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.intracellular chloride channel activity
EggNOG OGsKOG2513@1,KOG2513@2759
Ec32 ortholog descriptionAnoctamin
Ec32 orthologEc-11_004360.1
Cds size1203
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16812.4880.1prot_Ecto-sp13_S_contig16812.4880.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16812 257..3824 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.7707436-UTR-Ecto-sp13_S_contig16812:247..2561681462881.7707436-UTR-Ecto-sp13_S_contig16812:247..256Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16812 248..256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.7806294-CDS-Ecto-sp13_S_contig16812:256..2761681462881.7806294-CDS-Ecto-sp13_S_contig16812:256..276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16812 257..276 +
1681462881.7889519-CDS-Ecto-sp13_S_contig16812:910..10711681462881.7889519-CDS-Ecto-sp13_S_contig16812:910..1071Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16812 911..1071 +
1681462881.7971363-CDS-Ecto-sp13_S_contig16812:2190..23771681462881.7971363-CDS-Ecto-sp13_S_contig16812:2190..2377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16812 2191..2377 +
1681462881.8052485-CDS-Ecto-sp13_S_contig16812:2783..29791681462881.8052485-CDS-Ecto-sp13_S_contig16812:2783..2979Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16812 2784..2979 +
1681462881.813459-CDS-Ecto-sp13_S_contig16812:3185..38241681462881.813459-CDS-Ecto-sp13_S_contig16812:3185..3824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16812 3186..3824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16812.4880.1

>prot_Ecto-sp13_S_contig16812.4880.1 ID=prot_Ecto-sp13_S_contig16812.4880.1|Name=mRNA_Ecto-sp13_S_contig16812.4880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=401bp
MCYIPGRVQNWKIGKLKAKVGAERKKLEKAEADEAAGGGSGGAGEASRSV
RRKLLEEAGDHLWEEALLKEYNMIDVFDDYTMSLIQFGYVALFSAAFPLA
PLLAMINNLVQTRVDAHKICKTRRRPIALKSGGIGVWDNVLEVMSVIAVI
TNCALIGVTSERWWPADVSRATRILVVVVAEHIILFLKYWLESSVPRVPL
KVQRALQRERAERDQRGGLFFAGSSGVGGDYAKFEANFSRALATGDTADA
VCAKSTGGGAFYTSNRITNNLGAGGGGGLTGLDSTRAVVVSDDLTATTPT
PGGGGGRARKGFSVNLGGFSSTPAASPSPATATGVDGRGGGKSGLTATQR
TTSRSMMMTPPPQRREDGGGGGGGGKFYSASSVPLPPPSAATVGGEASCY
N
back to top

mRNA from alignment at Ecto-sp13_S_contig16812:248..3824+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16812.4880.1 ID=mRNA_Ecto-sp13_S_contig16812.4880.1|Name=mRNA_Ecto-sp13_S_contig16812.4880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3577bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16812:248..3824+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATCTGGATGTGCTACATTCCGGGCAGGTGAGCCTCTCTCTGTCAGCC GTTGTTCGTCTTACACATGTAGACAAGAAGATTGAGTTGTCCAAGAGACG GATTTGGTATCGCCGATGGACAGCAAGCAGATGTATCGCATGTAGGAATA ACGTAGCGGCAGCGCCACATATACAAGAAAGAAGACAGCGATAATATGAA AATAAGTGGAAACATGGCAGCGGGTAGTATACAATACCCGAGACTTAAAT TAAGCCACCGACATCGCTCAGTTTCGCAGTTCGTCGTGCGCTTAGTTTCT TCCTCTTGTATTCAGCTATGCGAGTTCTGCGGTGTTCTCTTACAAAACTA AACACTTCATGCTTCATACGCAAGATGTCACACGTCCATGACCATGACCG ACTTTCAGACCTTGACAAACGCTGCGCAGCCAACCCAAGCAGTGACGGCG TAGGAACCGTCTCCTCGAGGGCTTTCCCAAAACGGTTACAGCATGATTTG ATTATCTATGATGCCGCCCTCTTCGTCAGGGAGAGGTTGGGCCTTCAAAC ATCCGTCCAACCCGGTTCGGATTTCACGAGAACACACCACCAACGCGTCC CCCAAACCCCGCCTCAACTACACCCGAAATACACCCAACACCCGCTCGAT TCACTCGACGAAGGGTGCAAAACTGGAAGATCGGGAAGCTGAAGGCGAAG GTGGGCGCGGAGAGGAAGAAGCTGGAGAAGGCGGAGGCGGACGAGGCCGC GGGGGGTGGCAGCGGGGGAGCCGGCGAGGCTAGCAGGAGCGTGCGGCGCA AGCTTTTGGAAGAGGCCGGGGACCGTGAGTGTGTTTGTTGTTGTTGTTGA TGATGACGTCATGTAATGTGCGTGTTGTTTGTTGTTGTCATGCCGTGACC TAGAGTCTTCACTATCTGTTGTTTTGTGCATAACATTTGTCAGTTGTGAT TATTGTGCGTGTGTGATTTTATTTTGTTTTTTTTTCTGAATATGACCCAA CGAATCCATCTCTATCTAAGAAAGGGAGTCTCTTTCTGTTTATCGTCGTC GTCTTCGTCGTCGTTTTTGTCATGCTGTGACCGAGAGTCTTCACTCACTG CTTTTGTTTTGCTGTGATTGTTGTGCGTGTGTTCTGTTTTTTTCTCGCAG TCTTGTTCGTTGGTGTCACGTGCCTTGTTGCTGTAACTGTTGTTTCGTTG TTTCTGTTGTTATCGGTGTTGCTGTTATCTTCATGCGGTGAACGAAATCC GTCCAAAGTCTGCTCAGTCGGTACCCTCTAGCGTCCGTGCAGTACCACCG GTCCAAAGTGACAGTCGGTACCCTCTAGCGTCCGTACAGTACAACCGGTC CAAGGTGACACGCAGCCCTTCATCCCTTTCGTGGTCATGGCAGCCGCGAA GGCGGATTTCACTAGAAAAGAGGCGGAATGGTTGAAACTCTGTCGCCCGC CCACTCGTATTGTCTTGTCTGCTCATGACTGCGAAAGAAGAACAGTGTTT TTTTTTTCTGCGGTGCGTTCGGCCCACAACGAACGGCGCAGGTTTTGCTT GTTGTTCAATGAATGGTAACGGTAACGGTTATCAGTTGCATCGCATCACC CTGTGCCACCGCCGTGAGCCACTCGTCGTGCCTACAGATCACCGAACGAA TTACGCCAGGTTTAGCGTACCATCTAGCAGAAAATCAACGATGGCATCGA CTCGACGCCCTCCCGTCTTTACACGCCGCCCATGCTGGGGCATAAGAAGC GCGCTGAAGTAAAAGTAGGAGGGAACGATTGGCCATCGGTGATCGGTCCT GTCGGAACACTGCTCTATCCTTTCGCGGACGCGCGGTCAGTGCTCTAATC GCTAAGGCGTGCCAAACATGAGAGTACGCCCCCCCCCCCCCCCCCCCCCC CCCCCGCCGCCGCTTTCGCCATTTTCTATGACCAATGGAAAAGACTTGTG GGAGGAGGCCCTGCTCAAGGAGTACAACATGATCGATGTCTTCGACGACT ACACCATGAGTCTCATCCAGTTCGGGTATGTGGCCCTCTTCTCGGCCGCG TTCCCCCTGGCCCCCCTGCTGGCCATGATCAACAACCTCGTGCAGACCAG GGTGGACGCCCACAAGATTTGCAAGACTCGGTGAGTGTTTTTTTTGTTTT TTCTTGTTTACAGGCGTCCCCCTGTTGGTTGCTCCGTGGTTCATACGGCT ATGCAAGTCGTGAGCGATAGACAGAGCGCAAGGTGTAACATCTGCAAGGC AGATTCCGTGCGGACGCTCTCGGTTATCTTTGTTTTTTTTTTCGACCAAA GGCCTCCTCCCCCTGAGGCCGGTCCCCCACCCCACCCTCCCTGCTGTGCT TGCCTTCGATAATTGAAAAGCGAGATGTGTTTATGTGTTCCTTCTTATTT TCTTGTCTTGACTTCAAATTAGCGCTCACAGCATTTACGCTTTTTGCTCC AACCTTTGCTTACAGAAAATTTGTCCGCCAACAAAAACACTAAATTCCCG CGGCGGCCCTTTCGCTGTTGTGGCCGCCTTTGTCAGGCGTCGACCGATCG CACTCAAGAGCGGCGGCATCGGCGTGTGGGACAACGTCCTCGAGGTCATG TCGGTCATCGCGGTGATCACCAACTGTGCTCTGATCGGGGTTACCTCGGA GAGGTGGTGGCCGGCCGACGTGTCTCGCGCGACACGGATCCTGGTGGTGG TTGTCGCGGAGCACATCATCCTCTTCCTCAAGGTTTGTTGTTGTTGTTGT TGTTGTTGTTGTTGGTGGTGGTGTTGTTGGTGGTGGGGGTGGTGGTGGTG GTGGTGGTGGTGGTGGTGGTGGTGGTGGTTTTGTTGTTGTCGTTGTTTTC GTCCTCGTCCTCATGTCAACAACCGTTCCGATCTCCGCCCAGCACCTCCT AACACCCGTCCACCTTACGCGGACACCTTTCACAACAGTACTGGCTGGAG TCGTCCGTGCCCAGGGTGCCCCTCAAGGTGCAGCGGGCCCTGCAGCGCGA GCGCGCGGAGCGCGACCAGAGGGGCGGCCTGTTCTTCGCCGGCAGCTCCG GTGTCGGGGGCGATTACGCCAAGTTCGAGGCTAACTTCAGCCGCGCGCTG GCGACCGGAGACACAGCGGACGCCGTCTGCGCCAAGAGCACCGGCGGCGG GGCCTTTTACACTAGCAACAGGATCACCAACAACCTGGGAGCAGGAGGAG GAGGAGGGCTGACGGGTCTAGATTCGACGAGGGCGGTGGTAGTGAGCGAC GACCTTACGGCCACGACTCCGACCCCGGGAGGAGGCGGGGGTCGAGCGCG CAAGGGCTTCTCCGTCAACCTGGGGGGATTCTCCTCGACCCCGGCGGCCT CCCCGTCTCCGGCGACGGCGACCGGGGTTGACGGGCGCGGGGGGGGCAAG TCCGGGTTGACGGCGACCCAGAGAACCACGTCGAGGTCGATGATGATGAC ACCGCCGCCGCAGCGGCGTGAAGACGGTGGCGGCGGCGGCGGTGGCGGCA AGTTTTATTCTGCGTCTTCGGTGCCCCTGCCGCCGCCGAGTGCGGCCACC GTGGGGGGGGAAGCCTCCTGCTACAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16812:248..3824+

>mRNA_Ecto-sp13_S_contig16812.4880.1 ID=mRNA_Ecto-sp13_S_contig16812.4880.1|Name=mRNA_Ecto-sp13_S_contig16812.4880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16812:248..3824+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCTACATTCCGGGCAGGGTGCAAAACTGGAAGATCGGGAAGCTGAA
GGCGAAGGTGGGCGCGGAGAGGAAGAAGCTGGAGAAGGCGGAGGCGGACG
AGGCCGCGGGGGGTGGCAGCGGGGGAGCCGGCGAGGCTAGCAGGAGCGTG
CGGCGCAAGCTTTTGGAAGAGGCCGGGGACCACTTGTGGGAGGAGGCCCT
GCTCAAGGAGTACAACATGATCGATGTCTTCGACGACTACACCATGAGTC
TCATCCAGTTCGGGTATGTGGCCCTCTTCTCGGCCGCGTTCCCCCTGGCC
CCCCTGCTGGCCATGATCAACAACCTCGTGCAGACCAGGGTGGACGCCCA
CAAGATTTGCAAGACTCGGCGTCGACCGATCGCACTCAAGAGCGGCGGCA
TCGGCGTGTGGGACAACGTCCTCGAGGTCATGTCGGTCATCGCGGTGATC
ACCAACTGTGCTCTGATCGGGGTTACCTCGGAGAGGTGGTGGCCGGCCGA
CGTGTCTCGCGCGACACGGATCCTGGTGGTGGTTGTCGCGGAGCACATCA
TCCTCTTCCTCAAGTACTGGCTGGAGTCGTCCGTGCCCAGGGTGCCCCTC
AAGGTGCAGCGGGCCCTGCAGCGCGAGCGCGCGGAGCGCGACCAGAGGGG
CGGCCTGTTCTTCGCCGGCAGCTCCGGTGTCGGGGGCGATTACGCCAAGT
TCGAGGCTAACTTCAGCCGCGCGCTGGCGACCGGAGACACAGCGGACGCC
GTCTGCGCCAAGAGCACCGGCGGCGGGGCCTTTTACACTAGCAACAGGAT
CACCAACAACCTGGGAGCAGGAGGAGGAGGAGGGCTGACGGGTCTAGATT
CGACGAGGGCGGTGGTAGTGAGCGACGACCTTACGGCCACGACTCCGACC
CCGGGAGGAGGCGGGGGTCGAGCGCGCAAGGGCTTCTCCGTCAACCTGGG
GGGATTCTCCTCGACCCCGGCGGCCTCCCCGTCTCCGGCGACGGCGACCG
GGGTTGACGGGCGCGGGGGGGGCAAGTCCGGGTTGACGGCGACCCAGAGA
ACCACGTCGAGGTCGATGATGATGACACCGCCGCCGCAGCGGCGTGAAGA
CGGTGGCGGCGGCGGCGGTGGCGGCAAGTTTTATTCTGCGTCTTCGGTGC
CCCTGCCGCCGCCGAGTGCGGCCACCGTGGGGGGGGAAGCCTCCTGCTAC
AAC
back to top