mRNA_Ecto-sp13_S_contig1681.4879.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1681.4879.1
Unique NamemRNA_Ecto-sp13_S_contig1681.4879.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1681.4879.1 vs. uniprot
Match: D7FKI9_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI9_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 3.640e-37
Identity = 132/217 (60.83%), Postives = 137/217 (63.13%), Query Frame = 1 
Query:    1 IRTMAVPGTQGKSLHLACMDGDAAVVQRWLDAGKFVDKRDSSERTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------AAGAELEIRDVENKIAGDVFNKKASNRFRVPLETRDEIIAMRNSRQQEIAVAKQRGEAVRLGERAKTGKTRPR 606
            +R MAVPGTQGKSLHLACMDGDAA VQRWLDAG FVDKRDSS RTG     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                           AAGAE+EIRDV N IAGDVFNKK      VPLETRD++IAMRNSRQQEIAVAKQR EAVRL ERAKTG+ R R
Sbjct:    1 MRIMAVPGTQGKSLHLACMDGDAAAVQRWLDAGNFVDKRDSSGRTGLHQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGHLAVVKNQLKKSSVPLANDEQVLLGFKANINAVDFNGDTPLSKAARAGMVDVIDALLAAGAEIEIRDVGNNIAGDVFNKK------VPLETRDKVIAMRNSRQQEIAVAKQREEAVRLAERAKTGQPRNR 211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1681.4879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKI9_ECTSI3.640e-3760.83Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1681contigEcto-sp13_S_contig1681:4541..7827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score138.7
Seed ortholog evalue3.3e-30
Seed eggNOG ortholog2880.D7FKI9
Model size798
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-12_001890.1
Cds size648
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1681.4879.1prot_Ecto-sp13_S_contig1681.4879.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1681 4682..7818 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.6828065-UTR-Ecto-sp13_S_contig1681:4540..46811681462881.6828065-UTR-Ecto-sp13_S_contig1681:4540..4681Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1681 4541..4681 -
1681462881.7455978-UTR-Ecto-sp13_S_contig1681:7818..78271681462881.7455978-UTR-Ecto-sp13_S_contig1681:7818..7827Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1681 7819..7827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.6923494-CDS-Ecto-sp13_S_contig1681:4681..47401681462881.6923494-CDS-Ecto-sp13_S_contig1681:4681..4740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1681 4682..4740 -
1681462881.7030556-CDS-Ecto-sp13_S_contig1681:5059..51831681462881.7030556-CDS-Ecto-sp13_S_contig1681:5059..5183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1681 5060..5183 -
1681462881.7130117-CDS-Ecto-sp13_S_contig1681:5538..57331681462881.7130117-CDS-Ecto-sp13_S_contig1681:5538..5733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1681 5539..5733 -
1681462881.721175-CDS-Ecto-sp13_S_contig1681:6397..65051681462881.721175-CDS-Ecto-sp13_S_contig1681:6397..6505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1681 6398..6505 -
1681462881.7293012-CDS-Ecto-sp13_S_contig1681:6990..70801681462881.7293012-CDS-Ecto-sp13_S_contig1681:6990..7080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1681 6991..7080 -
1681462881.7374456-CDS-Ecto-sp13_S_contig1681:7746..78181681462881.7374456-CDS-Ecto-sp13_S_contig1681:7746..7818Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1681 7747..7818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1681.4879.1

>prot_Ecto-sp13_S_contig1681.4879.1 ID=prot_Ecto-sp13_S_contig1681.4879.1|Name=mRNA_Ecto-sp13_S_contig1681.4879.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=216bp
MAVPGTQGKSLHLACMDGDAAVVQRWLDAGKFVDKRDSSERTGLHQAAKC
GQSEVASLLLGAHAEVDSLDKQQRTPLHLCSETGHLAVVKVLLDFKANIN
AVDFNGDTPLNKAARAGMVDVVEALLAAGAELEIRDVENKIAGDVFNKKA
SNRFRVPLETRDEIIAMRNSRQQEIAVAKQRGEAVRLGERAKTGKTRPRE
KGSRDDGGCACCCIS*
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mRNA from alignment at Ecto-sp13_S_contig1681:4541..7827-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1681.4879.1 ID=mRNA_Ecto-sp13_S_contig1681.4879.1|Name=mRNA_Ecto-sp13_S_contig1681.4879.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3287bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1681:4541..7827- (Ectocarpus species13 EcNAP12_S_4_19m)
ATACGAACTATGGCTGTTCCAGGCACTCAGGGTAAAAGCCTGCACCTCGC
TTGCATGGACGGAGACGCTGCGGTAGTGCAGGTAACAGTGCGAATCGAAA
TGGTCAAGTTGCTGCTGAGAGGTCGAGATGCTGCTGCTGTGATCTCCGAT
CTCCGACCTCACATGACATGAATATGAATGTTGCATGAAGACCACGACCA
CGATTCTACGCGTCTGCAGCGTAGACTAGACACGGCAAGCACGCCGATAC
CACAGCTCTATGCCGTTGACGGTAGAACAAAACGCAAATTTGTAGCTGCC
GGAAGGTTAGCTATAGAAGTTCGCAGTTGATCACAACGCCCTAAATTGTT
TTATTTGCATCGGATTTATTTGCGCTTGCACGGTCGCGAGAAAATGGCGA
TGGTCAACAACCACACAACGGCGTGTTGGAACTTCGTGCATCATTTGATA
GCAGCACACGCTGTACCACCTCTTGGCGCCGACTTGTAGAACAGAGGTAT
TCTAAAGGTGTCCTACACACAGCACTATAAGTTACGGCCTTACGTGCAGT
TATAGAGTATACCATGCTTTGATCGAAAATGATATCTGACCACGCACCAT
CGCCCAACGGATCTACAGACAGCGAGACTGCTGCTTACGACTGGACTGCG
GTAGCGACTGTTTCAAAAAATTCCTCAGTTGACCTGAGTTGACGCAGCGA
TTTTTCTCGCGACCACCGTCTATACAAATAAAACTCCTGCCCTCCAGCGA
TGGCTGGATGCCGGCAAATTCGTTGATAAACGAGACAGCTCCGAACGGAC
CGGCCTCCATCAAGCAGCCAAATGCGGACAGAGCGAGGTACCACACCACC
GCGCTGAACATGTAAAAAGGTTGACTCTGTGGTGGTTGTCATGGACGGGT
AGAATGGCTGCTTACCTCTGAAAAAGTATGGTTTTATTAGCAAGACGCCC
GGGGACGTAGTGGAGCTGTTCACAGTACAGCAGAGCACAACTAATCGATG
GCTTAATTTAGATATATATTTTCAACGCCACCACATGTATTTCATCACGA
TGATTCGACTACTACTGTAATGACGATGCGTATTAATAACTAGACCATGT
CGTCCTCTGATCAGTCAGGCAGGGCATTTGACCGCTTTGAATGGCCGCGC
CATCGACAGTCGAGTCCTTTCGGTGAACGCAGCTAGTCAGTACAGGTCGA
GTTGCTCGAATTCGCTCGTATTCGATCGATATCTTGTCGACGTTCGATTT
GAATGTATGTGTGTGTTATTACTAGTCTACTGTGCTATGCTGTACCAACT
ACATGCCATACATTGACGAAAGGTTGCGAGTCTTCTACTGGGCGCTCACG
CGGAGGTGGACTCACTAGACAAGCAACAGAGGACACCCCTACATTTGTGC
AGTGAAACTGGTCACCTGGCCGTAGTGAAGGTACGCGATAAAAAGAAGCC
TCCCTGGCCGGCCGCGCGTTTTCACTTGTGTCTTACCTCTGCTGGCGTGC
TTGTTGCGGCCCTGACCCACGATGGACCCTCTTCAACAACCAGTTGAAAA
GTGAGCACATGCGCGCGACTGTACCGAAGGTCGGCGGCTTCGAGATCCCA
CTGCGCTGCTACAGCAGACTATCGCCCTGTTATAAACTTCACCTATCGTT
CCTCTAAGAGACCGTTGGTTTGACAGAATGATAAAAATATGTCTGTCTTC
TGTCTGGTGCCCTTCACTGAGAAGCTCCGAACCACGCGCTTTTTAACCCG
AACGCCCGAGGCACGAGGAATCAGACCATCGGCCTCCTGCACTACTTTAG
ACGCCTTCAACAAGTTTCAGCGTGATCGGTGCCTAACTTGTTTCACACAG
GTATTTGATTGGTTGTGGGCGAACCTTCATCTCGTTTGCTGTGCTCTCTA
CACCACCTTCACAAAAATATCGAGGATCTCCTAGAGGACCAGCAGGGTTG
CCCGAGGCCAGCTGCGATGCCAATACAGTAAAAGACAGCTGCTAGCAACA
CGCCCAAGATACACGTGTTCGAATCCCGATGGCGGTGCACACCCGTACTA
TAGGCAGCCTTCCTGTCAACCATTCTTGGCCTAACGACGAACAGGTGCTG
CTGGACTTCAAGGCCAATATCAACGCAGTCGATTTCAACGGCGATACACC
TTTGAACAAGGCGGCAAGGGCAGGAATGGTCGATGTTGTCGAGGCCCTCC
TCGCGGCAGGCGCCGAGCTCGAAATTCGTGATGTTGAAAATAAAATTGCC
GGTGACGTCTTCAACAAAAAGGCAAGCAATCGCTTTCGGGTGCGCTCTAA
GCTTGTTGAGGTTTTACTTGACAAGACACCGCCTCAGGTACCCTTTGCTA
AATTTCATTTTTTACCTCCAAGGGCAAGGTACAAACCCATGCACCGGACT
CATGACGTTTTGGGTCGCATGTCTCAACCGAAGTACCAGAGTACCACGCA
GGCGTGGCTGCGAATGCTCGTCGACATAACGGTTGATGAAACGGGTGCCT
AAAACTCGAACGCCTTTCATAGCTGTGTGGGAGGCAGCAAGCGCGACTTC
AGTTTAAGCCGTCGGTTCATCGATCACCAACTTATGAAATCAACCGATAA
GCGGTTAGCATTTATGCTCATGCGCCCGCCTGTGGTGGTTGTAGGTGCCC
TTGGAAACTCGTGATGAGATTATCGCGATGCGCAACAGCCGACAGCAGGA
AATCGCAGTCGCCAAACAAAGAGGGGAGGCCGTGCGACTAGGAGAGCGAG
CCAAGACAGGCAAGACCCGTAATCGGGAAAAGCTAAAAGTTGCAGCCCGC
CTCACTGGCCGAGTCGCTGTGAGTTTGCTCAGTATTGTGTAGTGCCCCGA
GTTTGCACGGGGACGCAAAGTTGGCACAGGCATGCGTGATTGAGTCAAGA
GGAGGAAATGTATCCGCGTCAACTGTATCCCTCTCTTGATGGTACTACAC
GTACAAGGCAGCAAGCTGATGGGCTGGAGCTGCTTCGTTTGTCCATCTTC
TACGAAGTCTCTAATTCACACCTCAGTCTTCCTCCGACACCATGCTTTCA
TTGTTTCCTTTCCACACATACCAACTAAATATCGCAGGTCCGCGAGAAAA
GGGGAGCAGGGACGACGGGGGTTGTGCGTGTTGCTGCATATCCTGACTGT
ATGGCCTGCACTATATCTTTCCCGTAGAAGTACCAACTGCTCCCTACGAC
AGCAGTACTCTTCCTGGGGGCGGGAGCTGCCATGGCGGTTCCTTGTGTGG
TGCGGGTTGGAAGGGGGCACGTGCGTGATGTGTGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1681:4541..7827-

>mRNA_Ecto-sp13_S_contig1681.4879.1 ID=mRNA_Ecto-sp13_S_contig1681.4879.1|Name=mRNA_Ecto-sp13_S_contig1681.4879.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1681:4541..7827- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGTTCCAGGCACTCAGGGTAAAAGCCTGCACCTCGCTTGCATGGA
CGGAGACGCTGCGGTAGTGCAGCGATGGCTGGATGCCGGCAAATTCGTTG
ATAAACGAGACAGCTCCGAACGGACCGGCCTCCATCAAGCAGCCAAATGC
GGACAGAGCGAGGTTGCGAGTCTTCTACTGGGCGCTCACGCGGAGGTGGA
CTCACTAGACAAGCAACAGAGGACACCCCTACATTTGTGCAGTGAAACTG
GTCACCTGGCCGTAGTGAAGGTGCTGCTGGACTTCAAGGCCAATATCAAC
GCAGTCGATTTCAACGGCGATACACCTTTGAACAAGGCGGCAAGGGCAGG
AATGGTCGATGTTGTCGAGGCCCTCCTCGCGGCAGGCGCCGAGCTCGAAA
TTCGTGATGTTGAAAATAAAATTGCCGGTGACGTCTTCAACAAAAAGGCA
AGCAATCGCTTTCGGGTGCCCTTGGAAACTCGTGATGAGATTATCGCGAT
GCGCAACAGCCGACAGCAGGAAATCGCAGTCGCCAAACAAAGAGGGGAGG
CCGTGCGACTAGGAGAGCGAGCCAAGACAGGCAAGACCCGTCCGCGAGAA
AAGGGGAGCAGGGACGACGGGGGTTGTGCGTGTTGCTGCATATCCTGA
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