mRNA_Ecto-sp13_S_contig16808.4877.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16808.4877.1
Unique NamemRNA_Ecto-sp13_S_contig16808.4877.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16808.4877.1 vs. uniprot
Match: D7FQH1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQH1_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.710e-48
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 1 
Query:   97 VPGGGSMELLVKIAAAHPSDTFRRKQAKAAIQDYAEEERSTAEGGYWMDRGVRDVLDLNARNRLTETPLILGAQNASIEVVAALLEEPNTD 369
            +P G SMELLVKI AAHPSDTFRRKQAKAAIQDYAEEERSTAEGGYWMDRG++D LDLNARNRLTETPLILGAQNASIEVVAALLEEP+TD
Sbjct:  140 LPTGVSMELLVKIGAAHPSDTFRRKQAKAAIQDYAEEERSTAEGGYWMDRGIKDALDLNARNRLTETPLILGAQNASIEVVAALLEEPDTD 230
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16808.4877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQH1_ECTSI1.710e-4891.21Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16808contigEcto-sp13_S_contig16808:1729..3741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size369
Hectar predicted targeting categoryother localisation
Exons4
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.5309968-CDS-Ecto-sp13_S_contig16808:1728..18151681462881.5309968-CDS-Ecto-sp13_S_contig16808:1728..1815Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16808 1729..1815 -
1681462881.540882-CDS-Ecto-sp13_S_contig16808:2299..23891681462881.540882-CDS-Ecto-sp13_S_contig16808:2299..2389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16808 2300..2389 -
1681462881.5505157-CDS-Ecto-sp13_S_contig16808:3047..31251681462881.5505157-CDS-Ecto-sp13_S_contig16808:3047..3125Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16808 3048..3125 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.560341-UTR-Ecto-sp13_S_contig16808:3125..31321681462881.560341-UTR-Ecto-sp13_S_contig16808:3125..3132Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16808 3126..3132 -
1681462881.570248-UTR-Ecto-sp13_S_contig16808:3634..37411681462881.570248-UTR-Ecto-sp13_S_contig16808:3634..3741Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16808 3635..3741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16808.4877.1prot_Ecto-sp13_S_contig16808.4877.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16808 1729..3125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16808.4877.1

>prot_Ecto-sp13_S_contig16808.4877.1 ID=prot_Ecto-sp13_S_contig16808.4877.1|Name=mRNA_Ecto-sp13_S_contig16808.4877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MELLVKIAAAHPSDTFRRKQAKAAIQDYAEEERSTAEGGYWMDRGVRDVL
DLNARNRLTETPLILGAQNASIEVVAALLEEPNTD
back to top

mRNA from alignment at Ecto-sp13_S_contig16808:1729..3741-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16808.4877.1 ID=mRNA_Ecto-sp13_S_contig16808.4877.1|Name=mRNA_Ecto-sp13_S_contig16808.4877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2013bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16808:1729..3741- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTGTCGCTGATATTAGAAGCACTTTGACGTCGATGAATCATGGCGATA
ATGACGCGTGCGGCTGTTTCGCACAGGTGGTGAGGCTTGCTGGCAGGTAC
CTGGAGGGCAACATGAACGAGGCGGAATGGTACCACCGCACGGGGGTAAG
TGGGCCAACAAGCGACAAGAGAAGCCAGCTTTTTGTGTGTTCCTGTTGAG
TTGATCGACCGCACCTGAACCAGACATGGCGGTGGTGTCGTCGAACATAA
GCGCACCTTACGCGAGAAGCAGAGCGAAAAACTACGGCTGTTTGTGCTAT
GTGGTCTTCCGTACGGGCCTTGTTGTGGAACGTCTTTTGGAGACGAACGA
CTCGCATCGTTCCGCGGACCGCGCGGTGAACGAGCGATTTCTATTTCCTT
GACCAATCCCTGCTACACGTCGGTTGAGACGAACGTGGAGGACCGATCCC
ATGGCACAGAGCTACTTCGTGCGGGCACTGCGCGAGTGACTGCTGCAGCT
GCTGCTGCTGTTGCTGTGCTGCCCTCGATTCGAGTGCATGGGGTTGCACC
ACTTAACGTATCCAAAACATTACAAACGGCACAAAAATCAAGGCGATTCT
ACCGACGAGTGGATCGATGGAATTGCTGGTGAAGATCGCCGCGGCACACC
CCTCCGACACCTTCCGCCGCAAGCAGGCCAAGGCTGCCATCCAGGTGTCC
CTTGAGACATGAATATTTCCTGCGAATGTCTTGCTGATGTTGGCGATAAC
CCTGCTAATGGTGGAACAGTCAGCGTTGATGCTAACGTTGTTGCTGCTGT
TGTCATCGTTAGTGAGTGGTGTTGCCGAACATGCGTAACTTTACGCTTTG
AGGCTGATGTATTGACGTTCCGTTGATGTCAACGTTGGTGGAGGTGCTGT
GTTGACTATATATAGTGCTTCCGTTGGACGTGGTGCTTACATTCATGCCC
GTAATTCCCTTGGTTCTTCTGATGTTGGGACCAGAACAAAACACGCGACA
CCCCCCGTGTGACGCCGAGCACCCCAGGGGAGTTCTACGACCCCCCTCCC
GACTCGCCACACGTATGTGTGTTTGTATGCGTTTGTTTCCGTCCCAATCT
ATTCTGGGCGCCAGTCTGCCGCACGGGGGGGGTTACCCACGCTTCCTCCT
GCTGCGCTTACTTCTCAATTTGTTTTTCACGAGCGAGGTGGTTTTGCCAC
GTTTGTTTTTTTCATTTTGTGACCGTGCACTGAAGTAGATAATATTTCGT
GCTACACTCTGAGACGTACATTGCACAATCCAATAAACACATGGTGCTTT
GGTGCTGTCGAGGAAATCGTGACACAACGTCACCCCGTGATCGTTCGAAC
AGGACTATGCCGAGGAGGAGAGGAGCACAGCCGAGGGGGGGTATTGGATG
GACAGAGGGGTCAGGGACGTCCTGGATCTAAACGCGCGGAACGTGAGCGA
AAACAACACAACAAGCGGTTGCCGCACGAAACGCCGCCAATAGAAACAAA
AAACATGCCATACTGCAGAGGGGGATGACTCGTTATTACGGCACCACCTC
CAGTTAGCGATTAAGGTGTGTGCCTGGTATAGTGTCTTGTTCTCGTCCTG
TTTGCAGAGAAAACACTGTATCCCAGCCCTTTTTCAGGTGTCCACAGGAG
GAGACAGTGAGAGAGGGAGTTAAAGTTGGAGTGGAAATTTCACAACGAAA
GGCACGGTAAGAAAGAGAGTGCGCCCCGAATGCTCAAAACGTATTTTGTA
CAGGCCGACACATCTCTGTCTGTCGGCCGAGCAATGGGGCCACACTAAAA
TGAAACGATGATTGTATTCGAGAATGTTGCATGCCTGTTACGCAGGCCTG
ATGCGGCGAAGTATTGCTCCGTCGATAATAAACAGCACGCAACAAGAACG
TGCGTTACGTTGTTCCTGTCGAGCAGCGGCTGACGGAGACCCCGCTTATC
CTTGGCGCGCAAAACGCCTCCATCGAGGTGGTGGCGGCACTCCTGGAGGA
GCCGAACACGGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16808:1729..3741-

>mRNA_Ecto-sp13_S_contig16808.4877.1 ID=mRNA_Ecto-sp13_S_contig16808.4877.1|Name=mRNA_Ecto-sp13_S_contig16808.4877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16808:1729..3741- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAATTGCTGGTGAAGATCGCCGCGGCACACCCCTCCGACACCTTCCG
CCGCAAGCAGGCCAAGGCTGCCATCCAGGACTATGCCGAGGAGGAGAGGA
GCACAGCCGAGGGGGGGTATTGGATGGACAGAGGGGTCAGGGACGTCCTG
GATCTAAACGCGCGGAACCGGCTGACGGAGACCCCGCTTATCCTTGGCGC
GCAAAACGCCTCCATCGAGGTGGTGGCGGCACTCCTGGAGGAGCCGAACA
CGGAC
back to top