mRNA_Ecto-sp13_S_contig16800.4874.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16800.4874.1
Unique NamemRNA_Ecto-sp13_S_contig16800.4874.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16800.4874.1 vs. uniprot
Match: A0A6H5K7S9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 8.500e-21
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 1
Query:    1 GLAHIHDHGMVHRDIKAANIVVMVNEDGSASGKVADFGLTCCEC 132
            GLAHIHD GM+HRDIKAANIVVMVNEDGSASGKVADFGLTC EC
Sbjct:   53 GLAHIHDDGMIHRDIKAANIVVMVNEDGSASGKVADFGLTCGEC 96          
BLAST of mRNA_Ecto-sp13_S_contig16800.4874.1 vs. uniprot
Match: D8LJ48_ECTSI (Similar to doublecortin and CaM kinase-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ48_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.220e-17
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1
Query:    1 GLAHIHDHGMVHRDIKAANIVVMVNEDGSASGKVADFGLTC 123
            GLAHIHDH MVHRDIKAANIVVMVNEDGSASGKVADFGLTC
Sbjct:  553 GLAHIHDHNMVHRDIKAANIVVMVNEDGSASGKVADFGLTC 593          
BLAST of mRNA_Ecto-sp13_S_contig16800.4874.1 vs. uniprot
Match: A0A6H5JBQ5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ5_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.600e-17
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1
Query:    1 GLAHIHDHGMVHRDIKAANIVVMVNEDGSASGKVADFGLTC 123
            GLAHIHD GM+HRDIKAANI VMVNEDGSASGKVADFGLTC
Sbjct:   53 GLAHIHDDGMIHRDIKAANIGVMVNEDGSASGKVADFGLTC 93          
BLAST of mRNA_Ecto-sp13_S_contig16800.4874.1 vs. uniprot
Match: D7G381_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G381_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.800e-15
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1
Query:    1 GLAHIHDHGMVHRDIKAANIVVMVNEDGSASGKVADFGLTC 123
            GL HIHD GMVHRDIKAANI+VMVNEDG A+GKVADFGLTC
Sbjct:  509 GLQHIHDKGMVHRDIKAANIIVMVNEDGDATGKVADFGLTC 549          
BLAST of mRNA_Ecto-sp13_S_contig16800.4874.1 vs. uniprot
Match: A0A6H5JND7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.800e-15
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 1
Query:    1 GLAHIHDHGMVHRDIKAANIVVMVNEDGSASGKVADFGLTCCE 129
            GL HIHD GMVHRDIKAANI+VMVNEDG A+GKVADFGLTC +
Sbjct:  546 GLQHIHDKGMVHRDIKAANILVMVNEDGDATGKVADFGLTCAQ 588          
BLAST of mRNA_Ecto-sp13_S_contig16800.4874.1 vs. uniprot
Match: A0A388LLE5_CHABU (Protein kinase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LLE5_CHABU)

HSP 1 Score: 61.6 bits (148), Expect = 8.910e-10
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    1 GLAHIHDHGMVHRDIKAANIVVMVNEDGSASGKVADFGLTCCEC 132
            GL H H  G+VHRD+K  N++VMV+EDG  + K++DFG +CC C
Sbjct:  163 GLQHAHSRGVVHRDVKGQNVLVMVDEDGGVTAKLSDFGASCCVC 206          
BLAST of mRNA_Ecto-sp13_S_contig16800.4874.1 vs. uniprot
Match: A0A388LLR0_CHABU (Protein kinase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LLR0_CHABU)

HSP 1 Score: 60.1 bits (144), Expect = 1.200e-9
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    1 GLAHIHDHGMVHRDIKAANIVVMVNEDGSASGKVADFGLTCCEC 132
            GL H H  G+VHRD+K  N++VMV+E+G  + K++DFG +CC C
Sbjct:   79 GLQHAHSRGVVHRDVKGQNVLVMVDEEGGVTAKLSDFGASCCVC 122          
BLAST of mRNA_Ecto-sp13_S_contig16800.4874.1 vs. uniprot
Match: A0A388LLP1_CHABU (Protein kinase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LLP1_CHABU)

HSP 1 Score: 60.1 bits (144), Expect = 3.110e-9
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 GLAHIHDHGMVHRDIKAANIVVMVNEDGSASGKVADFGLTCCECFCP 141
            GL H H  G+VHRD+K  N++VMV+E+G  + K++DFG +CC C  P
Sbjct:  128 GLQHAHSRGVVHRDVKGQNVLVMVDEEGGVTAKLSDFGSSCCVCGDP 174          
BLAST of mRNA_Ecto-sp13_S_contig16800.4874.1 vs. uniprot
Match: A0A388LLI6_CHABU (Protein kinase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LLI6_CHABU)

HSP 1 Score: 59.3 bits (142), Expect = 5.820e-9
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 GLAHIHDHGMVHRDIKAANIVVMVNEDGSASGKVADFGLTCCECFCP 141
            GL H H  G+VHRD+K  N+++MV+E+G  + K++DFG +CC C  P
Sbjct:  289 GLQHAHSRGVVHRDVKGQNVLLMVDEEGGVTAKLSDFGASCCVCGDP 335          
BLAST of mRNA_Ecto-sp13_S_contig16800.4874.1 vs. uniprot
Match: A0A4R7FSV7_9MICO (Non-specific serine/threonine protein kinase n=1 Tax=Amnibacterium kyonggiense TaxID=595671 RepID=A0A4R7FSV7_9MICO)

HSP 1 Score: 54.7 bits (130), Expect = 2.480e-7
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    4 LAHIHDHGMVHRDIKAANIVVMVNEDGSASGKVADFGL 117
            LAHIHD G+VHRD+K AN+++ V  DG+  GK+ DFG+
Sbjct:  121 LAHIHDRGVVHRDVKPANVLLQVRPDGAVRGKLTDFGI 158          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16800.4874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7S9_9PHAE8.500e-2193.18Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LJ48_ECTSI1.220e-1797.56Similar to doublecortin and CaM kinase-like 3 n=1 ... [more]
A0A6H5JBQ5_9PHAE2.600e-1792.68Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G381_ECTSI1.800e-1587.80N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5JND7_9PHAE1.800e-1583.72Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A388LLE5_CHABU8.910e-1054.55Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A388LLR0_CHABU1.200e-952.27Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A388LLP1_CHABU3.110e-951.06Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A388LLI6_CHABU5.820e-948.94Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A4R7FSV7_9MICO2.480e-757.89Non-specific serine/threonine protein kinase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16800contigEcto-sp13_S_contig16800:2..154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size126
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.3633373-CDS-Ecto-sp13_S_contig16800:1..1271681462881.3633373-CDS-Ecto-sp13_S_contig16800:1..127Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16800 2..127 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.3736022-UTR-Ecto-sp13_S_contig16800:127..1541681462881.3736022-UTR-Ecto-sp13_S_contig16800:127..154Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16800 128..154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16800.4874.1prot_Ecto-sp13_S_contig16800.4874.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16800 2..127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16800.4874.1

>prot_Ecto-sp13_S_contig16800.4874.1 ID=prot_Ecto-sp13_S_contig16800.4874.1|Name=mRNA_Ecto-sp13_S_contig16800.4874.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
MVHRDIKAANIVVMVNEDGSASGKVADFGLTCCECFCPLVQ*
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mRNA from alignment at Ecto-sp13_S_contig16800:2..154-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16800.4874.1 ID=mRNA_Ecto-sp13_S_contig16800.4874.1|Name=mRNA_Ecto-sp13_S_contig16800.4874.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16800:2..154- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCTGGCGCACATTCACGACCACGGTATGGTCCATCGCGACATCAAGGC CGCCAACATCGTTGTGATGGTGAATGAGGACGGCAGCGCGTCAGGCAAAG TGGCCGACTTTGGGCTCACGTGCTGTGAGTGCTTTTGCCCACTAGTACAA TAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16800:2..154-

>mRNA_Ecto-sp13_S_contig16800.4874.1 ID=mRNA_Ecto-sp13_S_contig16800.4874.1|Name=mRNA_Ecto-sp13_S_contig16800.4874.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16800:2..154- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCCATCGCGACATCAAGGCCGCCAACATCGTTGTGATGGTGAATGA
GGACGGCAGCGCGTCAGGCAAAGTGGCCGACTTTGGGCTCACGTGCTGTG
AGTGCTTTTGCCCACTAGTACAATAG
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