mRNA_Ecto-sp13_S_contig16798.4866.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16798.4866.1
Unique NamemRNA_Ecto-sp13_S_contig16798.4866.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16798.4866.1 vs. uniprot
Match: D7FNR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR2_ECTSI)

HSP 1 Score: 371 bits (953), Expect = 3.230e-124
Identity = 182/185 (98.38%), Postives = 183/185 (98.92%), Query Frame = 2 
Query:    2 YVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPVESSMASDLKKAAEANDSAKYVAPKYSKAAIAGDWVLMWQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTERMFMTVVRSKSHGVQMHGDHMFWGTKLEGPPDSEIPLKISGYVMYGFLEPTCVGRFIMRRSQEGRTSDEDTSSAL 556
            YVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPVESSMASDLKKAAEANDSAKYVAPKYSKAAIAGDWVLMWQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTERMFMTVVRSKSHGVQMHGDHMFWGTKLEGPPDS+IPLKISGYVMYGFLEPTCVGRFIMRRSQEGRTSDEDTS  L
Sbjct:  111 YVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPVESSMASDLKKAAEANDSAKYVAPKYSKAAIAGDWVLMWQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTERMFMTVVRSKSHGVQMHGDHMFWGTKLEGPPDSKIPLKISGYVMYGFLEPTCVGRFIMRRSQEGRTSDEDTSGIL 295
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BLAST of mRNA_Ecto-sp13_S_contig16798.4866.1 vs. uniprot
Match: A0A6H5LDX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX9_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 3.340e-65
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 2 
Query:    2 YVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPVESSMASDLKKAAEANDSAKYVAPKYSKAAIAGDWVLMWQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTERM 337
            YVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPVESSMASDLKKAAEANDSAKYVAPKYSKAAIAGDWVLMWQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTER+
Sbjct:  230 YVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPVESSMASDLKKAAEANDSAKYVAPKYSKAAIAGDWVLMWQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTERL 341
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BLAST of mRNA_Ecto-sp13_S_contig16798.4866.1 vs. uniprot
Match: A0A835YV66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV66_9STRA)

HSP 1 Score: 162 bits (409), Expect = 3.380e-43
Identity = 82/178 (46.07%), Postives = 112/178 (62.92%), Query Frame = 2 
Query:    2 YVGVLKKFSSVVEGSVIEGQMDPAVVGKFKMTPVESSMASDLKKAAEANDSAKYVAPKYSKAAIAGDWVLMWQDT----GAVFRLHLGEDLQFESLKGLGSG-QLGGRWNLWGTERMFMTVVRSKSHGVQMHGDHMFWGTKLEGPPDSEIPLKISGYVMYGFLEPTCVGRFIMRRSQE 520
            Y+G ++++S  + GSV EGQMDP VVG F+MTPV +SM++DL   A   D  + + P YSK  ++G W+L+        G VF L L ED  F S++G+G+G  L GRWN W  E+  +TVVR KS G QM  DH +WG K+ G  D   P +I+G +MYG+LEPT +G F M R  +
Sbjct:   82 YIGQMQEYSGRIRGSVTEGQMDPFVVGDFQMTPVVASMSTDLMALARRRDEQQSITPLYSKKVLSGPWLLVHSGVSGLRGGVFELMLTEDGGFASVRGVGAGGMLAGRWNTWDREKFILTVVRLKSRGAQMTADHQYWGFKIHG--DGVTPTRITGEIMYGYLEPTSIGCFTMMRPSQ 257
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16798.4866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNR2_ECTSI3.230e-12498.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LDX9_9PHAE3.340e-6599.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV66_9STRA3.380e-4346.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16798contigEcto-sp13_S_contig16798:137..3450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1333
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_004560.1
Cds size501
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16798.4866.1prot_Ecto-sp13_S_contig16798.4866.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16798 908..3389 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462880.628983-UTR-Ecto-sp13_S_contig16798:136..9071681462880.628983-UTR-Ecto-sp13_S_contig16798:136..907Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16798 137..907 -
1681462880.6892772-UTR-Ecto-sp13_S_contig16798:3389..34501681462880.6892772-UTR-Ecto-sp13_S_contig16798:3389..3450Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16798 3390..3450 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462880.6394677-CDS-Ecto-sp13_S_contig16798:907..9911681462880.6394677-CDS-Ecto-sp13_S_contig16798:907..991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16798 908..991 -
1681462880.6492648-CDS-Ecto-sp13_S_contig16798:1453..14981681462880.6492648-CDS-Ecto-sp13_S_contig16798:1453..1498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16798 1454..1498 -
1681462880.6589031-CDS-Ecto-sp13_S_contig16798:1954..20541681462880.6589031-CDS-Ecto-sp13_S_contig16798:1954..2054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16798 1955..2054 -
1681462880.6687472-CDS-Ecto-sp13_S_contig16798:2525..27041681462880.6687472-CDS-Ecto-sp13_S_contig16798:2525..2704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16798 2526..2704 -
1681462880.6791062-CDS-Ecto-sp13_S_contig16798:3296..33891681462880.6791062-CDS-Ecto-sp13_S_contig16798:3296..3389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16798 3297..3389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16798.4866.1

>prot_Ecto-sp13_S_contig16798.4866.1 ID=prot_Ecto-sp13_S_contig16798.4866.1|Name=mRNA_Ecto-sp13_S_contig16798.4866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=167bp
MDPAVVGKFKMTPVESSMASDLKKAAEANDSAKYVAPKYSKAAIAGDWVL
MWQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTERMFMTVVRSK
SHGVQMHGDHMFWGTKLEGPPDSEIPLKISGYVMYGFLEPTCVGRFIMRR
SQEGRTSDEDTSSALS*
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mRNA from alignment at Ecto-sp13_S_contig16798:137..3450-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16798.4866.1 ID=mRNA_Ecto-sp13_S_contig16798.4866.1|Name=mRNA_Ecto-sp13_S_contig16798.4866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3314bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16798:137..3450- (Ectocarpus species13 EcNAP12_S_4_19m)
GTACGTCGGCGTGCTGAAGAAGTTCAGCTCTGTGGTGGAAGGGAGCGTGA
TCGAGGGACAGATGGACCCTGCGGTGGTGGGAAAGTTCAAGATGACGCCG
GTGGAGTCCTCCATGGCGTCGGACCTTAAAAAGGCCGCCGAGGCGAACGA
TTCGGTCAGTGTTGCTGCTGTTGTTGAAAGATGCTGTCGGCCCTTCAGCA
GCCCCTATCGTCTTGCCACCTTAACGTCAATCCGGTGACTCTACCACTGC
AGCAGTTGCGGGTATGACGCTGCCACCGCAGCAGTTACGGGTACGTGTCA
GCTCTGTCGATGTTGATGGTCTAAACACGTTGGTATGACGATCACACCAT
CGGAATACACGCAGTTGTCACAAGTCAGGAACTCCACATTGGAGTACACG
GATGAACAGATGCCTATTTCAAGAAGGGTTGCCGTGGCCTTGCCACGGTG
TTCAAAGGGTGGCGTTAAATGATCAATTCATTCCTTGTGACGGTGTTGAC
TCATGGTGTACGAGGTGGCTACGAGTGTGCAGGCCTTGCTTGTAGCTGCT
GTCGTGCTTTGAATCGGCCTGCAGAGCGCAGCTGCTGTTCCCTCCAAGAA
TAAGCCGCCTGTTTTCTGCGATGGGGCTTGGCCGAGTGGTCTACACAGTA
GTAGGTCAGTCTATGTATCGAACACCGCCCACGAACGTGATCCGAAACAC
TTGGCGGTCACCCGCATCACGTCGCACCTTCGGACGCGCGTCGCAGGCCA
AGTACGTCGCCCCCAAGTACTCAAAGGCGGCCATCGCGGGAGACTGGGTC
CTGATGTGGCAGGACACCGGAGCTGTGTTCCGCCTTCACCTTGGGGAGGA
CCTCCAGTTTGAGAGCCTGAAGGGGTTGGGGAGTGGCCAGCTAGGAGGGA
GGTGGAACCTCTGGGGAACGGAAAGGTGTGCTGTTGCTGCTACCTTCGCG
TTGAAAATTGTGCCACTGCGCAGGTCTGTACTCCGCTCTTACAGTATCCA
ATGAGTGAGACGCACACTTCTGTAAGCGCAGGTTGAATCAACACAAGCGT
TTTTTGTTTGGCCAGTTGTTCGACAGTGTTGATTGTCAACGTTGAAGCGG
CGCCATGGCCGAAGATTGCACGTGCTTAAAGTATTCCAGCGGTTTGAGCT
TCACGGCGACGGTATGCATCGAGGTTCAACATACGATGTACGTGTGCGAC
TTGAGGTTGGGGAAGTCAGATTTTAGGTTCTCTTGAATTGTCTTGGTAGT
TTACCAAGTTGGTACGAGAAAAGCGGCCGCCTACTACGCGCTCCTCACGT
ATGTGTGTATCAAATTGACAGCATGTAGCGGTGTTGTCAAGGCTCTTTCA
CCAAATATCGCTGTGCCCACCCCCCCCGACCAAACGTGCGCATCAGGATG
TTCATGACGGTAGTCCGCTCCAAGAGCCACGGCGTGCAGATGCACGGGGA
CCACATGTTTTGGGGAACTAAGCTTGAGGGTCCGCCCGATTCCGAGGTTA
GTGGCAGCACGGTGCAAGTCCCCTTTTGACCAAACGCTGTTGGTGTGATG
CTTGGCATCGGAGCCATGCGTGTGGACTGTCGAGCGCTGAGGAGAAAGTC
GGAGCATGCAAGCAGAAGTCCCCCTTTTGCCCAATGTCCAGAAGTGTGGA
AAGCCTTGGCAAAAAATTACCAACTCGCATGGTGTCCTCGAGAGAAGTAC
CGAAAGAGAAAATCTCGCGGTTGGCCCTCTGCTTTGTCTTCATCTTTCAC
CCTTCGTGGCACGTCTCGGCGTAGAAGGGAGGGGCTGATGTTGCCCCCTG
CTCTCAAAACGACTTACACCGCTGTTCAGTAGCGTGTGAAGTGAGACACA
GCGGCAAGTATTTCCACCCTATCCCACCTCTGTTCCGACGCACCGTTTTC
TCTCTGCCCGCCCCTCCTTTCCCCCTTTACGTTTTTGGTTTTTCCCCGAA
AGATTCCTTTGAAGATCAGCGGGTACGTCATGTACGGCTTCCTAGAGGTG
AGGGGTGATAATCCAGACTCACAGTTACGTTCCATTGAACGGTTGCGTTT
ATGGCACCTGGCGCGCGAGGGGCGGGGGGGGCGTACGTGCCCGATGCTTT
GCCCTCGCCAAGCAGATTTAGCGTTCAGTGCCGGGAATCGCTCGAAGTTT
GCACGCTCTGCTTTGGCTGACCTTCCGCGTTTATTTAAGCTCACTGCCTC
ACTGCAGGTGCAGGTTCGGCCCCTCACGTGTACTTCGTTTTAATGATGGC
AAGGTACTGGAGTCACAGTTTTGGAAAAGCTTTGTCGCCCATATACAAAC
GACTCAATCGTCGCCGATCGTGCCGAAGCCTGCTTTGAGTCTGATTGCGA
CGGTCCGCGTTCGGTGGGTTCTCTCGTTTCCTTCACGTAAGGGTTTGCCA
TTGTTATCCGCTTTCTGCCTGCTCACTCCACTCCGTCTTCCCTCCGTTCT
GCCGAACAGCCTACTTGCGTCGGGCGCTTCATCATGCGACGTAGCCAAGA
AGGGCGAACAAGCGATGAGGACACGAGCAGCGCTCTAAGCTAGAACAATC
CGAGCTGGGTCAACCAAAGTTGGCGAAGAACGTGCGATGTCGCCGGTGGA
CGATCTGGAATGCGTGTTGGTGGGGTCTTTCCAACAAGGTGTTCTCCAAA
GACAGCTTGGATGGCAACACGCCACCCCTGTTCGCCCACGGCGCGCGGCA
GTAGCGACCCCCGGGGGGCAGGTGTGTTTGTTCGGTCAGAAAAGCGATCG
GAAAAAATTGGCGACGGTGGTGTGTGCGCACGAGGGCGTGCTTGTTTACA
AACAGACTTAATAATCCCTGATCGCGAAGGGGTGGAGAGGGCGTTGTGCA
TTCTTAAGGGAAGTTCCGCTTATGCGCCCGAATACACAATAGACGCGTCG
AGTGGGGAGATGTACATAAAAAAGCGCTAGGACGGGGCTCCGTGGATACT
TGGTGGGTCGTTCCTGTGTACGTGTTCATATCGTTTGAGATTTTCTTCTA
GGGGGCGGGGACTGCATGTAAAAAGGGTCCCGATGTATGTCGGCAGTAAC
AGTGGGGTTAGGTGACTGCTGTAGCTTCCGGCTGAACGACCTCGTCAGGT
TTTCCTGAACACTATACTGTTGAACGGTGAGGAGGAGGGGAAATGAAGGT
CGGCGTAGGGTTGTTTATTGAGGAGGGCACCGTGGTGCGCCATTTTGTGT
TGGAATGGGTGGCGCGTGGCGTCATTGAGTGAACAGTCGGGCATATTGCT
CGTAGTGTCTCTTTTTCGCGGCTTGTTTGTGTTTTCGGAGTTTTGCGAGG
AACGGAAATGGGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16798:137..3450-

>mRNA_Ecto-sp13_S_contig16798.4866.1 ID=mRNA_Ecto-sp13_S_contig16798.4866.1|Name=mRNA_Ecto-sp13_S_contig16798.4866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16798:137..3450- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCCTGCGGTGGTGGGAAAGTTCAAGATGACGCCGGTGGAGTCCTC
CATGGCGTCGGACCTTAAAAAGGCCGCCGAGGCGAACGATTCGGCCAAGT
ACGTCGCCCCCAAGTACTCAAAGGCGGCCATCGCGGGAGACTGGGTCCTG
ATGTGGCAGGACACCGGAGCTGTGTTCCGCCTTCACCTTGGGGAGGACCT
CCAGTTTGAGAGCCTGAAGGGGTTGGGGAGTGGCCAGCTAGGAGGGAGGT
GGAACCTCTGGGGAACGGAAAGGATGTTCATGACGGTAGTCCGCTCCAAG
AGCCACGGCGTGCAGATGCACGGGGACCACATGTTTTGGGGAACTAAGCT
TGAGGGTCCGCCCGATTCCGAGATTCCTTTGAAGATCAGCGGGTACGTCA
TGTACGGCTTCCTAGAGCCTACTTGCGTCGGGCGCTTCATCATGCGACGT
AGCCAAGAAGGGCGAACAAGCGATGAGGACACGAGCAGCGCTCTAAGCTA
G
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