mRNA_Ecto-sp13_S_contig16797.4865.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16797.4865.1
Unique NamemRNA_Ecto-sp13_S_contig16797.4865.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16797.4865.1 vs. uniprot
Match: D7FTF6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTF6_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 5.560e-43
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 CPSSCSGHGKCLSMSEAASEWDGRVLVRPNVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFTT 210
            CPSSCSGHGKCLSMSEAASEWDGRVLVRP+VVYTSVWDA +LHGCVCDPGWMGHDCSQLECPRGDDPFTT
Sbjct:  121 CPSSCSGHGKCLSMSEAASEWDGRVLVRPSVVYTSVWDADILHGCVCDPGWMGHDCSQLECPRGDDPFTT 190
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BLAST of mRNA_Ecto-sp13_S_contig16797.4865.1 vs. uniprot
Match: A0A7S0JRF9_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JRF9_CAFRO)

HSP 1 Score: 99.4 bits (246), Expect = 1.040e-22
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 CPSSCSGHGKCLSMSEAASEWDGRVLVRPNVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFT 207
            C S CSGHG+C+SM EAA+E +G  L+R  V+Y   WDA VL GCVCDP W G+DCSQ  CPRGDDP T
Sbjct:  129 CASDCSGHGRCMSMREAAAEVNGFSLLR-KVLYDEPWDADVLRGCVCDPEWEGYDCSQRRCPRGDDPLT 196
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BLAST of mRNA_Ecto-sp13_S_contig16797.4865.1 vs. uniprot
Match: A0A5A8DK87_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DK87_CAFRO)

HSP 1 Score: 99.4 bits (246), Expect = 1.080e-22
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 CPSSCSGHGKCLSMSEAASEWDGRVLVRPNVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFT 207
            C S CSGHG+C+SM EAA+E +G  L+R  V+Y   WDA VL GCVCDP W G+DCSQ  CPRGDDP T
Sbjct:  111 CASDCSGHGRCMSMREAAAEVNGFSLLR-KVLYDEPWDADVLRGCVCDPEWEGYDCSQRRCPRGDDPLT 178
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BLAST of mRNA_Ecto-sp13_S_contig16797.4865.1 vs. uniprot
Match: A0A7S2WG44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WG44_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.680e-22
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   13 CSGHGKCLSMSEAASEWDGRVLVRPNVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFTT 210
            C G G+CLS+ +A S WDG+ L RPN  YT  WDA  + GCVCD G+ G+DCS+ +CP GDDP TT
Sbjct:  128 CGGRGQCLSLRQAGSSWDGQALTRPNAPYTDPWDADKIFGCVCDMGFTGYDCSERQCPSGDDPLTT 193
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BLAST of mRNA_Ecto-sp13_S_contig16797.4865.1 vs. uniprot
Match: A0A7S2RYU0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYU0_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.100e-22
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   13 CSGHGKCLSMSEAASEWDGRVLVRPNVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFTT 210
            C G G+CLS+ +A S WDG+ L RPN  YT  WDA  + GCVCD G+ G+DCS+ +CP GDDP TT
Sbjct:  128 CGGRGQCLSLRQAGSSWDGQALTRPNAPYTDPWDADKIFGCVCDMGFTGYDCSERQCPSGDDPLTT 193
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BLAST of mRNA_Ecto-sp13_S_contig16797.4865.1 vs. uniprot
Match: A0A7S1XM25_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM25_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 6.980e-22
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    7 SSCSGHGKCLSMSEAASEWDGRVLVRPNVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFTT 210
            S CSGHG C+++SEA  +W+GR L RP +VY   WDAH + GCVCD G+ G +CS++ CP GDDP TT
Sbjct:  130 SECSGHGNCMTISEATFQWNGRNLSRPGLVYDESWDAHKITGCVCDHGFQGFNCSEIACPAGDDPKTT 197
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BLAST of mRNA_Ecto-sp13_S_contig16797.4865.1 vs. uniprot
Match: A0A0P1A7V1_PLAHL (Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7V1_PLAHL)

HSP 1 Score: 85.1 bits (209), Expect = 1.080e-17
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    1 CPSSCSGHGKCLSMSEAASEWDGR-VLVRPNVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFTT 210
            CP+SCSG+G+C+S+ +AA  +D R   VR    YT +WDA  + GC CDPG++G DCS+ ECP+GD+PFTT
Sbjct:   84 CPNSCSGNGRCVSIRDAAELYDDRNFFVR--TTYT-LWDADKIMGCQCDPGYIGFDCSERECPKGDNPFTT 151
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BLAST of mRNA_Ecto-sp13_S_contig16797.4865.1 vs. uniprot
Match: D0NQ83_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NQ83_PHYIT)

HSP 1 Score: 82.8 bits (203), Expect = 7.010e-17
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 CPSSCSGHGKCLSMSEAASEWDGRVLVRPNVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFTT 210
            CP++CSG+G+C+SM +AA+  D R  +  +  Y S+WDA  + GC CDPG+ G DCSQ ECP+GD+P TT
Sbjct:  106 CPNACSGNGRCISMRDAATLQDDRNFL-VSTTY-SLWDADKIMGCQCDPGFSGFDCSQRECPKGDNPLTT 173
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BLAST of mRNA_Ecto-sp13_S_contig16797.4865.1 vs. uniprot
Match: A0A0W8D933_PHYNI (EGF-like domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D933_PHYNI)

HSP 1 Score: 80.9 bits (198), Expect = 3.320e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 CPSSCSGHGKCLSMSEAASEWDGRVLVRPNVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFTT 210
            CP+ CSG+G+C+SM +AA+  D R     +  Y S+WDA  + GC CDPG+ G DCSQ ECP+GD+P TT
Sbjct:  107 CPNLCSGNGRCISMRDAATIQDDRNFF-VSTTY-SLWDADKIMGCQCDPGFTGFDCSQRECPKGDNPLTT 174
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BLAST of mRNA_Ecto-sp13_S_contig16797.4865.1 vs. uniprot
Match: A0A329RE35_9STRA (EGF-like domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RE35_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.330e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 CPSSCSGHGKCLSMSEAASEWDGRVLVRPNVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFTT 210
            CP+ CSG+G+C+SM +AA+  D R     +  Y S+WDA  + GC CDPG+ G DCSQ ECP+GD+P TT
Sbjct:   85 CPNLCSGNGRCISMRDAATLQDDRNFF-VSTTY-SLWDADKIMGCQCDPGFTGFDCSQRECPKGDNPLTT 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16797.4865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTF6_ECTSI5.560e-4395.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0JRF9_CAFRO1.040e-2263.77Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8DK87_CAFRO1.080e-2263.77Uncharacterized protein n=6 Tax=Cafeteria roenberg... [more]
A0A7S2WG44_9STRA2.680e-2257.58Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2RYU0_9STRA5.100e-2257.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1XM25_9STRA6.980e-2257.35Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0P1A7V1_PLAHL1.080e-1754.93Teneurin-1 and related extracellular matrix protei... [more]
D0NQ83_PHYIT7.010e-1752.86Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A0W8D933_PHYNI3.320e-1652.86EGF-like domain-containing protein n=10 Tax=Phytop... [more]
A0A329RE35_9STRA3.330e-1652.86EGF-like domain-containing protein n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16797contigEcto-sp13_S_contig16797:3615..3824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score157.1
Seed ortholog evalue2.9e-36
Seed eggNOG ortholog2880.D7FTF6
Model size210
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
Cds size210
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462880.6004872-CDS-Ecto-sp13_S_contig16797:3614..38241681462880.6004872-CDS-Ecto-sp13_S_contig16797:3614..3824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16797 3615..3824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16797.4865.1prot_Ecto-sp13_S_contig16797.4865.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16797 3615..3824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16797.4865.1

>prot_Ecto-sp13_S_contig16797.4865.1 ID=prot_Ecto-sp13_S_contig16797.4865.1|Name=mRNA_Ecto-sp13_S_contig16797.4865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
CPSSCSGHGKCLSMSEAASEWDGRVLVRPNVVYTSVWDAHVLHGCVCDPG
WMGHDCSQLECPRGDDPFTT
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mRNA from alignment at Ecto-sp13_S_contig16797:3615..3824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16797.4865.1 ID=mRNA_Ecto-sp13_S_contig16797.4865.1|Name=mRNA_Ecto-sp13_S_contig16797.4865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16797:3615..3824+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCCATCAAGTTGTTCCGGGCATGGGAAGTGCCTATCGATGTCTGAGGC
AGCCTCGGAGTGGGATGGGAGAGTCCTCGTTAGGCCGAACGTCGTGTACA
CATCGGTGTGGGACGCGCATGTCTTGCACGGCTGCGTCTGCGACCCGGGG
TGGATGGGCCACGACTGTAGCCAGCTGGAGTGTCCGAGGGGAGACGACCC
GTTCACGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16797:3615..3824+

>mRNA_Ecto-sp13_S_contig16797.4865.1 ID=mRNA_Ecto-sp13_S_contig16797.4865.1|Name=mRNA_Ecto-sp13_S_contig16797.4865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16797:3615..3824+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCCATCAAGTTGTTCCGGGCATGGGAAGTGCCTATCGATGTCTGAGGC
AGCCTCGGAGTGGGATGGGAGAGTCCTCGTTAGGCCGAACGTCGTGTACA
CATCGGTGTGGGACGCGCATGTCTTGCACGGCTGCGTCTGCGACCCGGGG
TGGATGGGCCACGACTGTAGCCAGCTGGAGTGTCCGAGGGGAGACGACCC
GTTCACGACG
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