mRNA_Ecto-sp13_S_contig1679.4861.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1679.4861.1
Unique NamemRNA_Ecto-sp13_S_contig1679.4861.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1679.4861.1 vs. uniprot
Match: D8LPV5_ECTSI (Disulfide-isomerase A6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV5_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.120e-38
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:  148 QSRRSAGLSATGSRVRQEPPEPAALRLASMMSLLPGVHGSGISEGSGSGAMGAVVAVVDPARAEGILRAIRTRGKVATGVAW 393
            Q  RSAGLSATGSRVRQ+PPEPAALRLASMMSLLPGVHGSGISEGS SGAMGAVVAVVDPARAEGILRAI+TRGKVATGVAW
Sbjct:  127 QGPRSAGLSATGSRVRQKPPEPAALRLASMMSLLPGVHGSGISEGSESGAMGAVVAVVDPARAEGILRAIKTRGKVATGVAW 208
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1679.4861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPV5_ECTSI1.120e-3893.90Disulfide-isomerase A6 n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1679contigEcto-sp13_S_contig1679:4687..6387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score143.7
Seed ortholog evalue6.2e-32
Seed eggNOG ortholog2880.D8LPV5
Model size396
KEGG koko:K09584
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0191@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-02_004220.1
EC5.3.4.1
Cds size393
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462880.4459596-CDS-Ecto-sp13_S_contig1679:4686..47701681462880.4459596-CDS-Ecto-sp13_S_contig1679:4686..4770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1679 4687..4770 +
1681462880.4600947-CDS-Ecto-sp13_S_contig1679:5047..51211681462880.4600947-CDS-Ecto-sp13_S_contig1679:5047..5121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1679 5048..5121 +
1681462880.4701056-CDS-Ecto-sp13_S_contig1679:5679..58601681462880.4701056-CDS-Ecto-sp13_S_contig1679:5679..5860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1679 5680..5860 +
1681462880.4788847-CDS-Ecto-sp13_S_contig1679:6331..63851681462880.4788847-CDS-Ecto-sp13_S_contig1679:6331..6385Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1679 6332..6385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1679.4861.1prot_Ecto-sp13_S_contig1679.4861.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1679 4687..6385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1679.4861.1

>prot_Ecto-sp13_S_contig1679.4861.1 ID=prot_Ecto-sp13_S_contig1679.4861.1|Name=mRNA_Ecto-sp13_S_contig1679.4861.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
GGVGGGVGGGLSPEVLAHARHLAADVQRVADVAGAFATGNMEAVGRVMMQ
SRRSAGLSATGSRVRQEPPEPAALRLASMMSLLPGVHGSGISEGSGSGAM
GAVVAVVDPARAEGILRAIRTRGKVATGVAW
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mRNA from alignment at Ecto-sp13_S_contig1679:4687..6387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1679.4861.1 ID=mRNA_Ecto-sp13_S_contig1679.4861.1|Name=mRNA_Ecto-sp13_S_contig1679.4861.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1701bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1679:4687..6387+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGCGTTGGCGGAGGAGTTGGCGGCGGGCTTTCCCCGGAGGTCCTGGC
GCACGCTCGGCACCTGGCCGCGGACGTTCAGCGGGTGAGGTGGGGGGGGG
GGGTACTCATAGTCGTGCATGCCGTAGTCGTTAGACCATTGACCTCGCAT
CCCTACAAAGCCGGGACGTCGGGTTCACACCTAGCCAGGCTCTCACATCA
TCAAGCGCGGAGCGCCGTAAGGCATTCGGCGTGTCGCATGGAGGGTGCGC
TACATCCTGCTAAGAGTGTCGGCATCTTGTGCTTACTTCCTTGCATGTGA
ATGACAGCTGCGAATGACTTAATTTATTTTCGGCTGCCGCACGCCTGCCT
GCCTCCAACAGGTTGCGGACGTGGCGGGTGCGTTTGCTACCGGGAACATG
GAAGCGGTCGGCAGGGTGATGATGCAGAGCCGAAGGTGGGGGTGCGCGGG
CTGCTGCTGCTGTTCATCGTGCAGTGCCTCGGTTACCACACCGCGATTCC
ACGTCGGCAGCAGCATTGACAACCTGTGTATCCGCATCGTTTATATTCTA
GATACCGTAGACGAGATGGGCTTTTGGGGCAGACTTGGGTCACGAGCATA
TTTTTATGTTTATCGTGTTCCTGATGGTGTGTAGGGTTTGCTTTTATCGG
GAACCATGACGCCGGGGCCTGCGTCGTCCGTCCCATCGGACAGCGCCGTC
GCTGACAGAGAGAGAGAGAGAGAGAGAGTGTGTGTTGGTCGACTAGAGAG
TGGTAGGGAAGGCTCCCTCTGTAGAAAGGCGGTTTACTGTGATACATGCT
TCCTTCTGGGCTGCAACGACGACGACCTCTCGGTTCGCCTCTCCTATTTT
GTACAAGACGAACCCACAGGGCGGCCTGGCCTTCAAGCCCTGCAACCTGC
GTGAATTTCTGTTTTGTCTCTCTCCGATTGTTCCTGCTGTACCACGACCT
GTCCTTGCCCCCCCACCCGTCCCCCCCCGACCGACGATTGCAGGTCCGCG
GGCCTCAGCGCGACAGGGTCTCGTGTGAGACAGGAGCCGCCGGAGCCCGC
GGCGTTGAGGCTAGCGTCGATGATGTCTCTCCTGCCGGGAGTCCACGGAA
GCGGGATTTCTGAGGGGTCGGGGAGCGGGGCCATGGGCGCGGTGGTGGCT
GTGGTGGATCCGGCACGGGCGGAGGTGGGGTTGGTTTTGACTGACGGGCA
AAAATGTGTTGACATTTCCGATTGTTTTGGTGGTAACATTGATAGAATAG
AGAGCGCGATTTTGAATTTGTGAACGACAAAAAAAATATAGAAGCGAGGG
CCACGTTCGATGTTGGTCGTTTCGTGGACGCAACCGGGGTGACGAAGCGC
GAAACCTCCCACTGACGTTGGGGCCTTAGCTACCTGCCTGCCGCCAGAGA
CTTGCTTCCGTAGCTCGATTGCTTCACGGCGACAATCACGGGGATGTTGG
AAATGAGAGCAACCGCGTAGCAAAATCACTTTTGAGTGTGTCGTGAGACC
CTCTGGCCGGATTGCTAGTATATTGTCTCTCTGTATCAAATATGCTGAGG
CACGCGAGGAGACCAACACCCAGAAGCACTAACTCTTACCCCCCCCGCTT
TTCCCTCTTGTCTCTGTACCCCCGCCGTGTCTACCGTTGCACCAGGGCAT
TCTGAGGGCAATCAGGACTCGAGGGAAGGTCGCCACAGGAGTTGCATGGG
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1679:4687..6387+

>mRNA_Ecto-sp13_S_contig1679.4861.1 ID=mRNA_Ecto-sp13_S_contig1679.4861.1|Name=mRNA_Ecto-sp13_S_contig1679.4861.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1679:4687..6387+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGCGTTGGCGGAGGAGTTGGCGGCGGGCTTTCCCCGGAGGTCCTGGC
GCACGCTCGGCACCTGGCCGCGGACGTTCAGCGGGTTGCGGACGTGGCGG
GTGCGTTTGCTACCGGGAACATGGAAGCGGTCGGCAGGGTGATGATGCAG
AGCCGAAGGTCCGCGGGCCTCAGCGCGACAGGGTCTCGTGTGAGACAGGA
GCCGCCGGAGCCCGCGGCGTTGAGGCTAGCGTCGATGATGTCTCTCCTGC
CGGGAGTCCACGGAAGCGGGATTTCTGAGGGGTCGGGGAGCGGGGCCATG
GGCGCGGTGGTGGCTGTGGTGGATCCGGCACGGGCGGAGGGCATTCTGAG
GGCAATCAGGACTCGAGGGAAGGTCGCCACAGGAGTTGCATGG
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