mRNA_Ecto-sp13_S_contig16785.4858.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16785.4858.1
Unique NamemRNA_Ecto-sp13_S_contig16785.4858.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16785.4858.1 vs. uniprot
Match: D7FRR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR7_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.770e-21
Identity = 90/230 (39.13%), Postives = 106/230 (46.09%), Query Frame = 1 
Query:  226 PAASSSDGDTSSKVSPSRGTVRHRPCDHDSEGPPPRRARLDGENDPGGHASVNGQEEDE-GDALFSSSVGSDGGGEVFPEENAVTDLDDAPSEMKSEGYDFDGCSDGVATPPPRDGVEERDDNVQDTRSGEISQHVNLGGGVEEAKGRECDQDPGNVGGTRQGTVDEH---RKGERTNSVDVVGDDGSGGDLVIAGAGASTAGVLRLEGGRTCDERPVQDTQTHDSATLQ 903
            P+ SS  G     +       R  P   D++  P RR  +          S NGQE+D+ GDALFSSSV + GGG  FPE + V D DDAPSEM    Y FDG  DGVAT                                                   +GTVDE    R+     SVD +G DGS GD VIAGAGA+ AGV RL+ GRT ++ P QDTQT  SATLQ
Sbjct:   60 PSTSSFSGSDEEDIDGDSDAARESPLRGDAKWRPWRRVDM-----ARNKYSGNGQEDDDVGDALFSSSVCNQGGGAAFPEADGVADFDDAPSEMDCGDYSFDGGFDGVATRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTVDERLWCRQNGCPYSVDGLGGDGSSGDSVIAGAGANAAGVHRLKRGRTYEQGPFQDTQTDGSATLQ 284
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16785.4858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRR7_ECTSI2.770e-2139.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16785contigEcto-sp13_S_contig16785:1102..2831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1686
Hectar predicted targeting categoryother localisation
Exons2
Cds size1686
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462880.2348702-CDS-Ecto-sp13_S_contig16785:1101..26931681462880.2348702-CDS-Ecto-sp13_S_contig16785:1101..2693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16785 1102..2693 +
1681462880.2448056-CDS-Ecto-sp13_S_contig16785:2737..28311681462880.2448056-CDS-Ecto-sp13_S_contig16785:2737..2831Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16785 2738..2831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16785.4858.1prot_Ecto-sp13_S_contig16785.4858.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16785 1102..2831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16785.4858.1

>prot_Ecto-sp13_S_contig16785.4858.1 ID=prot_Ecto-sp13_S_contig16785.4858.1|Name=mRNA_Ecto-sp13_S_contig16785.4858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=562bp
MAQGQDVANSGDGGANQTRGGGLGEQSSSSISSSDDKDSDGDSDGDRDEL
DGRGQRGHPQWASWLSNIMQGSSVSPAASSSDGDTSSKVSPSRGTVRHRP
CDHDSEGPPPRRARLDGENDPGGHASVNGQEEDEGDALFSSSVGSDGGGE
VFPEENAVTDLDDAPSEMKSEGYDFDGCSDGVATPPPRDGVEERDDNVQD
TRSGEISQHVNLGGGVEEAKGRECDQDPGNVGGTRQGTVDEHRKGERTNS
VDVVGDDGSGGDLVIAGAGASTAGVLRLEGGRTCDERPVQDTQTHDSATL
QVCHRGMDVVGSPLDGGGDGGDASPGGEGLPESLDNVRDTSVRWLDREVY
HGGRADDDRPEGHVEYLCEGGVDGSGSASGGKSRKNRSDSGGHGMKTGRK
GTTSLSDRGVKDGSFQGGGLSRGQGEDTEMRATSRLTSVAPLVGIEGGLN
ADDHMGRGLDTAAGANARGGSSTSEGRACGRRRFGLARPRKTGPGSDAGS
SFVRVPRVSLQPQSMMELRGGDVDATAANAGAGAREASVQSRRNRQDGSY
SGPTKEERVWT*
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mRNA from alignment at Ecto-sp13_S_contig16785:1102..2831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16785.4858.1 ID=mRNA_Ecto-sp13_S_contig16785.4858.1|Name=mRNA_Ecto-sp13_S_contig16785.4858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1730bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16785:1102..2831+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCAGGGACAAGACGTGGCCAACTCCGGGGATGGTGGGGCAAACCA
AACGAGAGGCGGTGGCCTAGGCGAACAATCGTCTAGTTCGATTTCCAGCT
CTGACGACAAGGACAGTGACGGTGACAGCGACGGTGACAGGGACGAGCTC
GACGGACGTGGACAACGAGGGCATCCGCAATGGGCCTCCTGGCTCTCCAA
CATCATGCAAGGAAGCAGTGTTTCCCCAGCTGCTTCTTCGAGCGACGGTG
ACACCAGTAGTAAAGTGAGCCCAAGCAGAGGCACTGTCAGGCACCGACCG
TGTGATCACGACAGTGAAGGTCCTCCACCGCGACGTGCACGACTAGACGG
AGAGAACGATCCCGGAGGTCATGCCTCAGTCAACGGCCAGGAAGAAGACG
AAGGCGACGCGTTGTTCAGCTCGTCCGTGGGCAGTGATGGTGGTGGCGAG
GTATTCCCCGAGGAAAATGCCGTGACTGACTTGGACGACGCTCCTAGTGA
GATGAAGAGTGAGGGCTATGATTTCGACGGTTGTTCTGATGGTGTGGCGA
CGCCCCCTCCGAGAGATGGCGTAGAAGAACGTGATGACAACGTACAGGAT
ACGAGGAGCGGGGAGATTAGCCAGCATGTAAACCTTGGCGGTGGTGTAGA
GGAGGCTAAGGGAAGAGAGTGTGACCAGGATCCCGGAAACGTTGGTGGCA
CTCGCCAAGGTACTGTAGACGAGCACCGAAAAGGTGAACGCACCAATTCT
GTCGATGTAGTTGGTGACGATGGTAGCGGCGGTGACTTGGTGATTGCTGG
TGCTGGAGCGAGCACCGCGGGCGTACTCCGGTTGGAAGGAGGAAGGACAT
GTGATGAGCGTCCGGTTCAGGACACACAGACGCACGACAGTGCGACATTG
CAGGTTTGTCATAGGGGGATGGATGTCGTGGGGTCTCCTTTGGATGGTGG
TGGTGACGGCGGTGACGCGTCCCCAGGCGGGGAAGGCCTGCCAGAATCCC
TGGACAATGTACGGGACACGAGTGTCCGGTGGCTAGACCGTGAGGTGTAT
CACGGCGGTCGTGCAGACGACGACAGACCGGAGGGACATGTTGAGTATCT
GTGCGAGGGTGGTGTTGATGGTAGTGGTAGTGCTAGTGGTGGTAAGTCTC
GTAAGAACAGGAGCGATTCTGGCGGACACGGCATGAAGACAGGCAGGAAA
GGAACCACGTCCCTTAGCGACCGGGGGGTAAAGGATGGAAGTTTTCAGGG
GGGTGGTCTGTCGCGGGGGCAAGGTGAGGATACCGAGATGAGAGCTACGT
CCAGGTTGACTAGTGTGGCACCGTTGGTTGGCATTGAGGGGGGTCTGAAC
GCTGATGACCACATGGGCCGAGGCCTTGATACTGCAGCTGGAGCAAATGC
AAGGGGCGGAAGCAGTACGAGCGAAGGTAGAGCTTGTGGACGACGTCGAT
TTGGGCTCGCAAGACCGAGGAAAACGGGGCCGGGGTCAGACGCTGGAAGC
AGCTTCGTACGTGTTCCTAGGGTCAGTTTGCAACCCCAAAGCATGATGGA
GCTCCGAGGCGGGGACGTCGATGCCACCGCGGCGAACGCAGGGTCTCCCC
CCAAAGCAGACGCAATCCGCAGCGTGGCTCGTACAGTGCCGGCGCACGTG
AGGCCTCTGTCCAAAGCAGACGCAATCGACAAGATGGCTCGTACAGTGGC
CCTACGAAGGAAGAACGAGTTTGGACGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16785:1102..2831+

>mRNA_Ecto-sp13_S_contig16785.4858.1 ID=mRNA_Ecto-sp13_S_contig16785.4858.1|Name=mRNA_Ecto-sp13_S_contig16785.4858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1686bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16785:1102..2831+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCAGGGACAAGACGTGGCCAACTCCGGGGATGGTGGGGCAAACCA
AACGAGAGGCGGTGGCCTAGGCGAACAATCGTCTAGTTCGATTTCCAGCT
CTGACGACAAGGACAGTGACGGTGACAGCGACGGTGACAGGGACGAGCTC
GACGGACGTGGACAACGAGGGCATCCGCAATGGGCCTCCTGGCTCTCCAA
CATCATGCAAGGAAGCAGTGTTTCCCCAGCTGCTTCTTCGAGCGACGGTG
ACACCAGTAGTAAAGTGAGCCCAAGCAGAGGCACTGTCAGGCACCGACCG
TGTGATCACGACAGTGAAGGTCCTCCACCGCGACGTGCACGACTAGACGG
AGAGAACGATCCCGGAGGTCATGCCTCAGTCAACGGCCAGGAAGAAGACG
AAGGCGACGCGTTGTTCAGCTCGTCCGTGGGCAGTGATGGTGGTGGCGAG
GTATTCCCCGAGGAAAATGCCGTGACTGACTTGGACGACGCTCCTAGTGA
GATGAAGAGTGAGGGCTATGATTTCGACGGTTGTTCTGATGGTGTGGCGA
CGCCCCCTCCGAGAGATGGCGTAGAAGAACGTGATGACAACGTACAGGAT
ACGAGGAGCGGGGAGATTAGCCAGCATGTAAACCTTGGCGGTGGTGTAGA
GGAGGCTAAGGGAAGAGAGTGTGACCAGGATCCCGGAAACGTTGGTGGCA
CTCGCCAAGGTACTGTAGACGAGCACCGAAAAGGTGAACGCACCAATTCT
GTCGATGTAGTTGGTGACGATGGTAGCGGCGGTGACTTGGTGATTGCTGG
TGCTGGAGCGAGCACCGCGGGCGTACTCCGGTTGGAAGGAGGAAGGACAT
GTGATGAGCGTCCGGTTCAGGACACACAGACGCACGACAGTGCGACATTG
CAGGTTTGTCATAGGGGGATGGATGTCGTGGGGTCTCCTTTGGATGGTGG
TGGTGACGGCGGTGACGCGTCCCCAGGCGGGGAAGGCCTGCCAGAATCCC
TGGACAATGTACGGGACACGAGTGTCCGGTGGCTAGACCGTGAGGTGTAT
CACGGCGGTCGTGCAGACGACGACAGACCGGAGGGACATGTTGAGTATCT
GTGCGAGGGTGGTGTTGATGGTAGTGGTAGTGCTAGTGGTGGTAAGTCTC
GTAAGAACAGGAGCGATTCTGGCGGACACGGCATGAAGACAGGCAGGAAA
GGAACCACGTCCCTTAGCGACCGGGGGGTAAAGGATGGAAGTTTTCAGGG
GGGTGGTCTGTCGCGGGGGCAAGGTGAGGATACCGAGATGAGAGCTACGT
CCAGGTTGACTAGTGTGGCACCGTTGGTTGGCATTGAGGGGGGTCTGAAC
GCTGATGACCACATGGGCCGAGGCCTTGATACTGCAGCTGGAGCAAATGC
AAGGGGCGGAAGCAGTACGAGCGAAGGTAGAGCTTGTGGACGACGTCGAT
TTGGGCTCGCAAGACCGAGGAAAACGGGGCCGGGGTCAGACGCTGGAAGC
AGCTTCGTACGTGTTCCTAGGGTCAGTTTGCAACCCCAAAGCATGATGGA
GCTCCGAGGCGGGGACGTCGATGCCACCGCGGCGAACGCAGGTGCCGGCG
CACGTGAGGCCTCTGTCCAAAGCAGACGCAATCGACAAGATGGCTCGTAC
AGTGGCCCTACGAAGGAAGAACGAGTTTGGACGTAA
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