mRNA_Ecto-sp13_S_contig16774.4851.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16774.4851.1
Unique NamemRNA_Ecto-sp13_S_contig16774.4851.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16774.4851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16774contigEcto-sp13_S_contig16774:2215..2750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size536
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.6491382-UTR-Ecto-sp13_S_contig16774:2214..23241681462879.6491382-UTR-Ecto-sp13_S_contig16774:2214..2324Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16774 2215..2324 +
1681462879.6848383-UTR-Ecto-sp13_S_contig16774:2681..27501681462879.6848383-UTR-Ecto-sp13_S_contig16774:2681..2750Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16774 2682..2750 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.661856-CDS-Ecto-sp13_S_contig16774:2324..26811681462879.661856-CDS-Ecto-sp13_S_contig16774:2324..2681Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16774 2325..2681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16774.4851.1prot_Ecto-sp13_S_contig16774.4851.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16774 2325..2681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16774.4851.1

>prot_Ecto-sp13_S_contig16774.4851.1 ID=prot_Ecto-sp13_S_contig16774.4851.1|Name=mRNA_Ecto-sp13_S_contig16774.4851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
MPTHEMPSLLPWFEEVVKNADVVQQREAHAMCVHGRGNRQGLQDSKRYTL
LLHSFRHSHPRVLLEHDSWQQSTTRPIVTAKLFATTAWLNRHTKHSNATN
KLTVKSRIDSNTTNSGLQ*
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mRNA from alignment at Ecto-sp13_S_contig16774:2215..2750+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16774.4851.1 ID=mRNA_Ecto-sp13_S_contig16774.4851.1|Name=mRNA_Ecto-sp13_S_contig16774.4851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=536bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16774:2215..2750+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGCACTCAAAACATACAGCAGTAGCACATAGGCCGTCCTTGCGATTCC
TATGTGCCGCTTTTTCTACGGGAGCGAATTTTGCCGCGTTAGGTCGATGT
TGTGAGGTCGATGCCAACCCACGAAATGCCGTCATTGTTGCCTTGGTTCG
AAGAGGTCGTCAAGAACGCCGATGTGGTTCAGCAGAGAGAAGCCCATGCC
ATGTGTGTGCATGGTAGAGGAAATCGTCAAGGGTTGCAGGATTCGAAAAG
ATACACCTTGCTCCTCCATAGCTTTCGGCACAGCCACCCTCGCGTTCTGC
TCGAACATGACTCGTGGCAACAGTCAACTACACGTCCCATTGTAACGGCG
AAGCTCTTCGCGACAACCGCTTGGTTGAACCGACACACGAAACACAGCAA
CGCCACCAACAAGCTGACCGTGAAAAGCCGCATCGACAGCAACACAACCA
ACAGCGGACTACAGTAGACTACAACAGCACTGCGGCACGTTTCAAAAATG
AATGAAACATTCCTTTCACACCACTACCATCGGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16774:2215..2750+

>mRNA_Ecto-sp13_S_contig16774.4851.1 ID=mRNA_Ecto-sp13_S_contig16774.4851.1|Name=mRNA_Ecto-sp13_S_contig16774.4851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16774:2215..2750+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAACCCACGAAATGCCGTCATTGTTGCCTTGGTTCGAAGAGGTCGT
CAAGAACGCCGATGTGGTTCAGCAGAGAGAAGCCCATGCCATGTGTGTGC
ATGGTAGAGGAAATCGTCAAGGGTTGCAGGATTCGAAAAGATACACCTTG
CTCCTCCATAGCTTTCGGCACAGCCACCCTCGCGTTCTGCTCGAACATGA
CTCGTGGCAACAGTCAACTACACGTCCCATTGTAACGGCGAAGCTCTTCG
CGACAACCGCTTGGTTGAACCGACACACGAAACACAGCAACGCCACCAAC
AAGCTGACCGTGAAAAGCCGCATCGACAGCAACACAACCAACAGCGGACT
ACAGTAG
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