mRNA_Ecto-sp13_S_contig16771.4847.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16771.4847.1
Unique NamemRNA_Ecto-sp13_S_contig16771.4847.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16771.4847.1 vs. uniprot
Match: D8LMH5_ECTSI (RmlD_sub_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMH5_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.560e-32
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    1 RELETIKPTHVLNAAGVTGRPNVDWCESHRPETVRANVIGTLNLADLCSSKGIHCTIYATG 183
            +ELETIKPTHVLNAAGVTGRPNVDWCESHRPET+RANVIGTLNLADLCSSK IHCTIYATG
Sbjct:   45 KELETIKPTHVLNAAGVTGRPNVDWCESHRPETIRANVIGTLNLADLCSSKSIHCTIYATG 105
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BLAST of mRNA_Ecto-sp13_S_contig16771.4847.1 vs. uniprot
Match: A0A835Z517_9STRA (RmlD_sub_bind domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z517_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.260e-28
Identity = 50/61 (81.97%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    1 RELETIKPTHVLNAAGVTGRPNVDWCESHRPETVRANVIGTLNLADLCSSKGIHCTIYATG 183
            RE++ +KPTHVLNAAGVTGRPNVDWC+ H+PET+RANVIGTLNLAD+CSS+GIHCT+YATG
Sbjct:   48 REIDELKPTHVLNAAGVTGRPNVDWCDLHKPETIRANVIGTLNLADVCSSRGIHCTMYATG 108
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BLAST of mRNA_Ecto-sp13_S_contig16771.4847.1 vs. uniprot
Match: A0A448YU74_9STRA (RmlD_sub_bind domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YU74_9STRA)

HSP 1 Score: 114 bits (284), Expect = 9.020e-27
Identity = 45/61 (73.77%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 RELETIKPTHVLNAAGVTGRPNVDWCESHRPETVRANVIGTLNLADLCSSKGIHCTIYATG 183
            +EL+ +KPTHV N+AG+TGRPN+DWCE+H+PET+R NVIGTLNLADLC  +GIHCT+YATG
Sbjct:   53 KELDEVKPTHVFNSAGITGRPNIDWCETHKPETIRTNVIGTLNLADLCLERGIHCTVYATG 113
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BLAST of mRNA_Ecto-sp13_S_contig16771.4847.1 vs. uniprot
Match: A0A7R9WWB4_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWB4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.150e-26
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 RELETIKPTHVLNAAGVTGRPNVDWCESHRPETVRANVIGTLNLADLCSSKGIHCTIYATG 183
            +EL+ IKPTHVLNAAG+TGRPN+DWCE H+PET+R NVIGTLNLADLC  + IHCT+YATG
Sbjct:   49 KELDEIKPTHVLNAAGITGRPNIDWCEDHKPETMRTNVIGTLNLADLCYERNIHCTVYATG 109
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BLAST of mRNA_Ecto-sp13_S_contig16771.4847.1 vs. uniprot
Match: A0A7S1YXN3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YXN3_TRICV)

HSP 1 Score: 113 bits (283), Expect = 1.190e-26
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    4 ELETIKPTHVLNAAGVTGRPNVDWCESHRPETVRANVIGTLNLADLCSSKGIHCTIYATG 183
            EL+ +KPTHVLNAAG+TGRPN+DWCE H+PET+R NVIGTLNLADLC  + IHCTIYATG
Sbjct:   51 ELDAVKPTHVLNAAGITGRPNIDWCEDHKPETIRTNVIGTLNLADLCLERDIHCTIYATG 110
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BLAST of mRNA_Ecto-sp13_S_contig16771.4847.1 vs. uniprot
Match: A0A6A0A107_HAELA (RmlD_sub_bind domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A107_HAELA)

HSP 1 Score: 107 bits (266), Expect = 3.500e-26
Identity = 45/65 (69.23%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    4 ELETIKPTHVLNAAGVTGRPNVDWCESHRPETVRANVIGTLNLADLCSSKGIHCTIYATGYTMHF 198
            E+E +KPTHVLNAAG+TGRPNVDWCE H+ ET+RANVIG LNLAD+C+ +GIH T Y TG   H+
Sbjct:   52 EIERVKPTHVLNAAGMTGRPNVDWCEDHKVETIRANVIGCLNLADVCTQQGIHMTYYGTGCIFHY 116
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BLAST of mRNA_Ecto-sp13_S_contig16771.4847.1 vs. uniprot
Match: A0A1E7F469_9STRA (Putative bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F469_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.640e-26
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    4 ELETIKPTHVLNAAGVTGRPNVDWCESHRPETVRANVIGTLNLADLCSSKGIHCTIYATG 183
            EL+ IKPTHV NAAG+TGRPN+DWCE+H+PET+R NVIGTLNLADLC  + IHCT+YATG
Sbjct:   56 ELDEIKPTHVFNAAGITGRPNIDWCETHKPETIRTNVIGTLNLADLCLDRNIHCTVYATG 115
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BLAST of mRNA_Ecto-sp13_S_contig16771.4847.1 vs. uniprot
Match: A0A7S4AAM3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AAM3_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.910e-26
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    1 RELETIKPTHVLNAAGVTGRPNVDWCESHRPETVRANVIGTLNLADLCSSKGIHCTIYATG 183
            +EL+ IKPTHVLNAAG+TGRPN+DWCE ++PET+R NVIGTLNLADLC  +GIHC +YATG
Sbjct:   53 KELDEIKPTHVLNAAGITGRPNIDWCEKNKPETIRTNVIGTLNLADLCMERGIHCCVYATG 113
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BLAST of mRNA_Ecto-sp13_S_contig16771.4847.1 vs. uniprot
Match: K0TKT8_THAOC (RmlD_sub_bind domain-containing protein n=2 Tax=Thalassiosirales TaxID=33847 RepID=K0TKT8_THAOC)

HSP 1 Score: 111 bits (277), Expect = 5.780e-26
Identity = 44/61 (72.13%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 RELETIKPTHVLNAAGVTGRPNVDWCESHRPETVRANVIGTLNLADLCSSKGIHCTIYATG 183
            +EL+++KP+HV  AAG+TGRPN+DWCE H+P+T+R NVIGTLNLADLC+ +GIHCTIYATG
Sbjct:   27 KELDSVKPSHVFMAAGITGRPNIDWCEDHKPDTIRTNVIGTLNLADLCNERGIHCTIYATG 87
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16771.4847.1 vs. uniprot
Match: A0A7R9W800_9STRA (Hypothetical protein n=3 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9W800_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.740e-25
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    4 ELETIKPTHVLNAAGVTGRPNVDWCESHRPETVRANVIGTLNLADLCSSKGIHCTIYATG 183
            EL+  KP+HVLNAAG+TGRPN+DWCE H+PET+R NVIGTLNLADLC  K IHCTIYATG
Sbjct:   50 ELDAYKPSHVLNAAGITGRPNIDWCEDHKPETMRTNVIGTLNLADLCMLKDIHCTIYATG 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16771.4847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMH5_ECTSI2.560e-3295.08RmlD_sub_bind domain-containing protein n=2 Tax=Ec... [more]
A0A835Z517_9STRA1.260e-2881.97RmlD_sub_bind domain-containing protein n=1 Tax=Tr... [more]
A0A448YU74_9STRA9.020e-2773.77RmlD_sub_bind domain-containing protein n=1 Tax=Ps... [more]
A0A7R9WWB4_9STRA1.150e-2677.05Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
A0A7S1YXN3_TRICV1.190e-2678.33Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6A0A107_HAELA3.500e-2669.23RmlD_sub_bind domain-containing protein (Fragment)... [more]
A0A1E7F469_9STRA3.640e-2676.67Putative bifunctional dTDP-4-dehydrorhamnose 3,5-e... [more]
A0A7S4AAM3_9STRA4.910e-2675.41Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
K0TKT8_THAOC5.780e-2672.13RmlD_sub_bind domain-containing protein n=2 Tax=Th... [more]
A0A7R9W800_9STRA1.740e-2578.33Hypothetical protein n=3 Tax=Odontellaceae TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16771contigEcto-sp13_S_contig16771:2345..3386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score128.6
Seed ortholog evalue1.3e-27
Seed eggNOG ortholog2880.D8LMH5
Preferred nameGAL102
Model size663
KEGG rclassRC00182,RC00402,RC01014,RC01531
KEGG koko:K01710,ko:K12450,ko:K12451
KEGG ReactionR00293,R06513,R08704,R08705,R08935
KEGG Pathwayko00520,ko00521,ko00523,ko00525,ko01055,ko01130,map00520,map00521,map00523,map00525,map01055,map01130
KEGG ModuleM00793
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0006810,GO:0007275,GO:0008150,GO:0008152,GO:0008460,GO:0008830,GO:0008831,GO:0009058,GO:0009225,GO:0009226,GO:0009506,GO:0009791,GO:0009812,GO:0009813,GO:0009914,GO:0009966,GO:0009987,GO:0010154,GO:0010191,GO:0010192,GO:0010214,GO:0010253,GO:0010280,GO:0010315,GO:0010489,GO:0010490,GO:0010646,GO:0010817,GO:0010928,GO:0016020,GO:0016491,GO:0016614,GO:0016616,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016854,GO:0016857,GO:0018130,GO:0019305,GO:0019438,GO:0022414,GO:0023051,GO:0030054,GO:0030154,GO:0032501,GO:0032502,GO:0033478,GO:0034641,GO:0034654,GO:0042127,GO:0042440,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046383,GO:0046483,GO:0048046,GO:0048316,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0050377,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051552,GO:0051553,GO:0051554,GO:0051555,GO:0055044,GO:0055086,GO:0055114,GO:0060918,GO:0061458,GO:0065007,GO:0065008,GO:0071704,GO:0071944,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
Exons2
EggNOG free text desc.dTDP-glucose 4,6-dehydratase activity
EggNOG OGsCOG1088@1,KOG0747@2759
Ec32 ortholog descriptionRmlD-like substrate binding domain
Ec32 orthologEc-05_002790.1
EC4.2.1.46,4.2.1.76
Cds size255
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.476995-UTR-Ecto-sp13_S_contig16771:2344..27521681462879.476995-UTR-Ecto-sp13_S_contig16771:2344..2752Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16771 2345..2752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.488723-CDS-Ecto-sp13_S_contig16771:2752..29561681462879.488723-CDS-Ecto-sp13_S_contig16771:2752..2956Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16771 2753..2956 -
1681462879.498525-CDS-Ecto-sp13_S_contig16771:3335..33861681462879.498525-CDS-Ecto-sp13_S_contig16771:3335..3386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16771 3336..3386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16771.4847.1prot_Ecto-sp13_S_contig16771.4847.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16771 2753..3386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16771.4847.1

>prot_Ecto-sp13_S_contig16771.4847.1 ID=prot_Ecto-sp13_S_contig16771.4847.1|Name=mRNA_Ecto-sp13_S_contig16771.4847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
RELETIKPTHVLNAAGVTGRPNVDWCESHRPETVRANVIGTLNLADLCSS
KGIHCTIYATGYTMHFIHVSKNTSSRLVAKEANM*
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mRNA from alignment at Ecto-sp13_S_contig16771:2345..3386-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16771.4847.1 ID=mRNA_Ecto-sp13_S_contig16771.4847.1|Name=mRNA_Ecto-sp13_S_contig16771.4847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1042bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16771:2345..3386- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGAGCTTGAGACGATCAAGCCGACCCATGTCCTCAACGCCGCCGGTGT
GGTGAGTGATGATTGTCCTCGTTGTTGCTATTTTTAGGTGGCGGTGGCAT
GATCGACGAGGGTGTTAGGTTTTGTCCCATTCGCAACATGGAACCGGTCC
GGGCTCCACAGACGTCGTGAACCTCATGTGGAGAAGCACACCCTCGTGTT
ATCCGGACAGAGCAGAGTGGCAAGCCGCCGCCCGCGTGAGCTTTCAGCGG
CAGGATTCCCTGAGTTCGCCGTGTAAATTATACCTTCGTTTTTTCAGATT
GTCGTTCGCGTCCACCGAGGATGTTTCTCTGACAGTTTCCATCTGCCCGA
TCCGTGGTGCTTCTCTCCCGTACGCTTCGCGTGTTTTCTCACTGTTTTGA
ACGGAATTATGGTGTATCATCTACGACCAGACGGGGCGGCCAAACGTGGA
CTGGTGCGAGAGCCACCGCCCAGAGACGGTTCGGGCGAACGTTATCGGCA
CGCTCAACCTGGCGGACCTGTGCTCGAGCAAGGGTATTCACTGCACAATA
TACGCCACCGGGTACACCATGCATTTTATACATGTATCCAAGAATACCTC
GTCTAGGCTGGTGGCGAAGGAAGCTAACATGTAGACGCTTGTTTCAGAAG
CAGGCAAATCGAATGTCTGGATGTTCATAAAACGTTTGTTTCTCAGCTTG
TTAATGTCAGGTCTTGAAACACGATAGCACGCCATATACTGCAATAAGAG
TGGGGCCACTAGTCACCAGGCTGCACCTTCTCTACAGTAGCTGGGGTTGT
CGGTTCGTCCTTTGCACCATCTTGCCACAAGCCATATTTGTACGATTGGG
TGCCTCTCAGTACTGTGGAGAAGAACGTACAGCATGCGTACGTGGTTTCA
CATTCACCGCCATGGACCGCCATAGACGGCCATGGATGGTGGGTTTCTGA
GTGCCCGCTCTGGCTACCCTAGGGAGCAAACGTTGCATCCACTCCGTGTA
TCTGCGCAATTTTGAACATTAATGATGGGGCAGCACATCCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16771:2345..3386-

>mRNA_Ecto-sp13_S_contig16771.4847.1 ID=mRNA_Ecto-sp13_S_contig16771.4847.1|Name=mRNA_Ecto-sp13_S_contig16771.4847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16771:2345..3386- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGAGCTTGAGACGATCAAGCCGACCCATGTCCTCAACGCCGCCGGTGT
GACGGGGCGGCCAAACGTGGACTGGTGCGAGAGCCACCGCCCAGAGACGG
TTCGGGCGAACGTTATCGGCACGCTCAACCTGGCGGACCTGTGCTCGAGC
AAGGGTATTCACTGCACAATATACGCCACCGGGTACACCATGCATTTTAT
ACATGTATCCAAGAATACCTCGTCTAGGCTGGTGGCGAAGGAAGCTAACA
TGTAG
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