mRNA_Ecto-sp13_S_contig16770.4846.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16770.4846.1
Unique NamemRNA_Ecto-sp13_S_contig16770.4846.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16770.4846.1 vs. uniprot
Match: A0A6H5JQQ2_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ2_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 3.020e-108
Identity = 186/227 (81.94%), Postives = 192/227 (84.58%), Query Frame = -3 
Query:    3 ISRFPEQAIAAAVPVISAAMVCRWTLRSQPPFTPSSSNSRRSNPNTSAAASTMLLPLLMAWAYVLALGEKLQLELESLYSGSKSTASXXXXXXXXXXXXXXXXTELGKAVPASTAPFVAPAVADKSAAAAVATTRTCTSCWSRKMPPSNSSSTTEHKEGLLPPACTTSRARATDKTLVLDLDETLILARGDAREMGEEQRFDFMLSFQHQLPPPQEGRRRSRGLVPR 683
            +SRFP+QAIAAAVPVISAAMVCRWTLRSQ P TPS SNSRR+NPN SAAASTMLLPLLMAWAYVLALGEKLQLELESLYSGSK TAS                +ELGK  PASTAP V    ADKSAAAAVATTRTCTSCW RK+ PS+ SSTTEH E LLPPAC TSRARATDKTLVLDLDETLILARGDAREMGEEQRFDFMLSFQHQLPPPQE RRRSRGLVPR
Sbjct:    1 MSRFPDQAIAAAVPVISAAMVCRWTLRSQLPSTPSFSNSRRNNPNRSAAASTMLLPLLMAWAYVLALGEKLQLELESLYSGSKGTASPTTAPKPPSPSLLP--SELGKGAPASTAPIVPLPAADKSAAAAVATTRTCTSCWGRKLLPSSRSSTTEHNERLLPPACPTSRARATDKTLVLDLDETLILARGDAREMGEEQRFDFMLSFQHQLPPPQEERRRSRGLVPR 225
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16770.4846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQQ2_9PHAE3.020e-10881.94FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16770contigEcto-sp13_S_contig16770:1670..2456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size787
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-17_000280.1
Cds size738
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.4384243-UTR-Ecto-sp13_S_contig16770:1669..17181681462879.4384243-UTR-Ecto-sp13_S_contig16770:1669..1718Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16770 1670..1718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.447615-CDS-Ecto-sp13_S_contig16770:1718..24561681462879.447615-CDS-Ecto-sp13_S_contig16770:1718..2456Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16770 1719..2456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16770.4846.1prot_Ecto-sp13_S_contig16770.4846.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16770 1719..2456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16770.4846.1

>prot_Ecto-sp13_S_contig16770.4846.1 ID=prot_Ecto-sp13_S_contig16770.4846.1|Name=mRNA_Ecto-sp13_S_contig16770.4846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=246bp
MRGTSPRLLLLPSCGGGSWCWKLSMKSNLCSSPISLASPLARISVSSRSN
TRVLSVARARLVVHAGGSSPSLCSVVLLLLDGGIFRLQHEVQVRVVATAA
AADLSATAGATNGAVEAGTAFPSSVGIGDGDGDGDFGAVVGLAVLLLPLY
KLSNSNCSFSPSARTYAQAISNGRSIVEAAALVLGLLLLLLEEEGVNGGW
LRSVHLHTMAADMTGTAAAIACSGNLLMWFGSTSKTANARSSVSQ*
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mRNA from alignment at Ecto-sp13_S_contig16770:1670..2456-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16770.4846.1 ID=mRNA_Ecto-sp13_S_contig16770.4846.1|Name=mRNA_Ecto-sp13_S_contig16770.4846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=787bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16770:1670..2456- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTGGCACCAGCCCTCGGCTCCTCCTTCTCCCTTCTTGCGGTGGTGG
CAGTTGGTGTTGGAAGCTCAGCATGAAGTCGAACCTCTGCTCCTCTCCCA
TTTCCCTGGCGTCTCCCCTGGCGAGGATTAGCGTCTCGTCGAGATCCAAC
ACCAGAGTCTTGTCGGTCGCCCGCGCCCGGCTTGTTGTACACGCAGGAGG
CAGCAGTCCTTCCTTGTGCTCTGTCGTGCTGCTGCTGTTGGATGGTGGCA
TTTTCCGACTCCAGCATGAAGTGCAAGTACGTGTTGTTGCAACCGCCGCG
GCGGCGGATTTATCTGCAACAGCGGGGGCAACAAATGGTGCTGTGGAAGC
TGGGACAGCCTTTCCTAGCTCCGTTGGCATTGGCGATGGCGATGGCGATG
GCGATTTTGGTGCCGTGGTAGGGCTGGCGGTGCTCTTGCTCCCGCTGTAC
AAGCTCTCCAACTCCAACTGCAGCTTCTCTCCAAGCGCGAGAACGTACGC
CCAGGCCATCAGCAACGGCAGAAGCATCGTGGAAGCGGCGGCGCTCGTGT
TGGGATTGCTTCTTCTGCTGTTGGAAGAAGAAGGAGTGAACGGTGGTTGG
CTCCGCAGCGTCCACCTGCACACCATGGCTGCCGATATGACCGGCACGGC
CGCTGCTATCGCCTGCTCCGGGAATCTGCTGATGTGGTTCGGCTCGACTT
CAAAAACCGCCAACGCCCGCAGTTCCGTCTCTCAATAGTTCCGTTTTACA
CGTCAAGGAATGTCGGGACGGCGGAACAACACTTCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16770:1670..2456-

>mRNA_Ecto-sp13_S_contig16770.4846.1 ID=mRNA_Ecto-sp13_S_contig16770.4846.1|Name=mRNA_Ecto-sp13_S_contig16770.4846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16770:1670..2456- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTGGCACCAGCCCTCGGCTCCTCCTTCTCCCTTCTTGCGGTGGTGG
CAGTTGGTGTTGGAAGCTCAGCATGAAGTCGAACCTCTGCTCCTCTCCCA
TTTCCCTGGCGTCTCCCCTGGCGAGGATTAGCGTCTCGTCGAGATCCAAC
ACCAGAGTCTTGTCGGTCGCCCGCGCCCGGCTTGTTGTACACGCAGGAGG
CAGCAGTCCTTCCTTGTGCTCTGTCGTGCTGCTGCTGTTGGATGGTGGCA
TTTTCCGACTCCAGCATGAAGTGCAAGTACGTGTTGTTGCAACCGCCGCG
GCGGCGGATTTATCTGCAACAGCGGGGGCAACAAATGGTGCTGTGGAAGC
TGGGACAGCCTTTCCTAGCTCCGTTGGCATTGGCGATGGCGATGGCGATG
GCGATTTTGGTGCCGTGGTAGGGCTGGCGGTGCTCTTGCTCCCGCTGTAC
AAGCTCTCCAACTCCAACTGCAGCTTCTCTCCAAGCGCGAGAACGTACGC
CCAGGCCATCAGCAACGGCAGAAGCATCGTGGAAGCGGCGGCGCTCGTGT
TGGGATTGCTTCTTCTGCTGTTGGAAGAAGAAGGAGTGAACGGTGGTTGG
CTCCGCAGCGTCCACCTGCACACCATGGCTGCCGATATGACCGGCACGGC
CGCTGCTATCGCCTGCTCCGGGAATCTGCTGATGTGGTTCGGCTCGACTT
CAAAAACCGCCAACGCCCGCAGTTCCGTCTCTCAATAG
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