mRNA_Ecto-sp13_S_contig16768.4843.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16768.4843.1
Unique NamemRNA_Ecto-sp13_S_contig16768.4843.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16768.4843.1 vs. uniprot
Match: D7G512_ECTSI (Cathepsin-like proteinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G512_ECTSI)

HSP 1 Score: 493 bits (1269), Expect = 1.340e-172
Identity = 238/264 (90.15%), Postives = 244/264 (92.42%), Query Frame = 1
Query:    4 SDIYETCQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQQAYCGSCWTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYNQGCNGGWPSISMDYISKNGGIVPESIYPYRKHYMCWKSAVGGSFDESSATPTCSMQLVDGNYAATLAIEVALAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEGIDMGEYCEPLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGERGYYRLVRGVNACGIADDVTTIIVADATVE 795
            SD+YE+CQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQ AYCGSCWTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYNQGCNGGWPSISMDYISKNGGIVPESIYPYRK +M       G   +    P CS  + +GNYAATLAIEVALAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEGIDMGEYCEPLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGERGYYRLVRGVNACGIADDVTTIIVADATVE
Sbjct:  210 SDMYESCQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQ-AYCGSCWTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYNQGCNGGWPSISMDYISKNGGIVPESIYPYRKVFM------NGHLGD----PVCSDVVKEGNYAATLAIEVALAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEGIDMGEYCEPLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGERGYYRLVRGVNACGIADDVTTIIVADATVE 462          
BLAST of mRNA_Ecto-sp13_S_contig16768.4843.1 vs. uniprot
Match: A0A6H5JC15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC15_9PHAE)

HSP 1 Score: 444 bits (1143), Expect = 8.310e-153
Identity = 237/377 (62.86%), Postives = 245/377 (64.99%), Query Frame = 1
Query:    1 MSDIYETCQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQQAYCGSCWTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYNQGCNGGWPSISMDYISKNGGIVPESIYPYRKHYMCWKSAVGGSFDESSATPTCSMQLVDGNYAATLAIEVALAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEGIDMGEY----------------------------------------------------------------------------------------------------------------CEPLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGERGYYRLVRGVNACGIADDVTTIIVADATVE 795
            MSDIYE+CQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQ AYCGSCWTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYNQGCNGGWPSISMDYIS+NGGIVPESIYPYRK +M       G   +    P CS  + +GNYAATL+IEVALAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEGIDMGEY                                                                                                                CEPLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGE+GYYRLVRGVNACGIADDVTTIIVADATVE
Sbjct:  142 MSDIYESCQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQ-AYCGSCWTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYNQGCNGGWPSISMDYISENGGIVPESIYPYRKVFM------NGHLGD----PVCSDVVKEGNYAATLSIEVALAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEGIDMGEYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKYCEPLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGEQGYYRLVRGVNACGIADDVTTIIVADATVE 507          
BLAST of mRNA_Ecto-sp13_S_contig16768.4843.1 vs. uniprot
Match: F0Y246_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y246_AURAN)

HSP 1 Score: 253 bits (646), Expect = 5.240e-80
Identity = 130/252 (51.59%), Postives = 172/252 (68.25%), Query Frame = 1
Query:   22 CQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQQAYCGSCWTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYNQGCNGGWPSISMDYISKNGGIVPESIYPYRKHYMCWKSAVGGSFDESSATPTCSMQLVDGNYAA--TLAIE--VALAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEGIDMGEYCEPLEIDHAVLIVGYGEED-GVKYWIIKNSWKYLWGERGYYRLVRGVNACGIADDV 762
            C +C RFP    Y  G+LP +FDWR  GAVT VKNQ+ YCGSCW+FS+ G +EG  +L+G  L SLS QQLV+C+T YN GC+GGWP  +M+Y+S  GG+VP   YPY+   +C  +  GG+ +  + TPTC  +L++G+ AA    AIE    +A  +  E+ M   L+ NGPLS+A +A GM++Y+ G+D    C+P  +DHAVL+VGYG E   V YW+IKNSW   WGE GYYRLVRGVNACG+A+ V
Sbjct:   76 CAACDRFPHFGDYDMGNLPDDFDWRALGAVTAVKNQK-YCGSCWSFSSAGDIEGTMFLAGDDLISLSTQQLVSCNT-YNYGCDGGWPFAAMEYVSHFGGLVPMDDYPYKG--ICMDNMCGGT-EIFTGTPTCDKELLNGHLAAGDVAAIEGYQFVAMGAEYEDLMHVALVKNGPLSLAFNANGMEFYAGGVDHHFPCDPTALDHAVLLVGYGTETFDVPYWLIKNSWDTEWGEGGYYRLVRGVNACGVANMV 322          
BLAST of mRNA_Ecto-sp13_S_contig16768.4843.1 vs. uniprot
Match: A0A836CK28_9STRA (Pept_C1 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK28_9STRA)

HSP 1 Score: 237 bits (604), Expect = 1.010e-73
Identity = 118/263 (44.87%), Postives = 162/263 (61.60%), Query Frame = 1
Query:   16 ETCQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQQAYCGSCWTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYN--QGCNGGWPSISMDYISKNGGIVPESIYPYRKHYMCWKSAVGGSFDESSATPTCSMQLVDGNYAATLAIEVA----LAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEG-IDMGEYCEPLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGERGYYRLVRGVNACGIADDVTTIIVAD 783
            E C +C  +PEL  Y   ++PTEFDWR     TPV +Q  YCGSCW+FST G +EG W+L+   +  LS+QQLVACD   N  +GCNGG P  +M Y++  GG+V E  YPY K+   W    G        TPTC    V G+   +    +     +A  +  E+ +A  ++ NGP+S+ L+A+GM+YY  G ID    CEP  +DHAVL+VG+GE+DGV+YW++KNSW   WGE GYYR+V+G N CG+A+   T ++ D
Sbjct:   70 EDCAACGMYPELGNYTLANMPTEFDWRAK-YETPVSSQ-GYCGSCWSFSTAGDIEGKWFLATGQVVELSKQQLVACDQKRNAAEGCNGGLPYAAMQYVASTGGLVYEEDYPY-KNVCAW----GTCGSAPKGTPTCDTDQVRGSLKDSAVAHIGGWQMVALGAQYEDLLATAMVKNGPISIVLNAVGMEYYKAGAIDTTLPCEPTTLDHAVLVVGFGEQDGVEYWVVKNSWGSWWGEGGYYRVVKGQNHCGLANFAVTSVIKD 325          
BLAST of mRNA_Ecto-sp13_S_contig16768.4843.1 vs. uniprot
Match: A0A7S2BSW9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BSW9_9STRA)

HSP 1 Score: 229 bits (583), Expect = 6.360e-71
Identity = 121/278 (43.53%), Postives = 160/278 (57.55%), Query Frame = 1
Query:   16 ETCQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQQAYCGSCWTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYNQGCNGGWPSISMDYISKNGGIVPESIYPYRKHYMCWKSAVGGSFDESSATPTCSMQLV------DGNYAATLAIEVALAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEGI------DMGEYCE-------------------PLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGERGYYRLVRGVNACGIAD 756
            + C +C R+P  ++Y + + P  FDWRD GAVT VKNQ+ YCGSCWTFST   +EG  +L+   L S SEQQ VACDT YN GC+GGW   +M Y++  G +V E  YPY    M +          +  TPTC   L+      DG+  A +     +A  +  E+ MA +++ NGPLS+A++A GMDYY  GI         EYCE                   P ++DH VL+V YGE+DGV YW+IKNSW   WGE GYYR+ RGVN CG+++
Sbjct:   23 DMCAACERYPGFKKYTSENRPDNFDWRDLGAVTEVKNQK-YCGSCWTFSTAQDIEGTHFLATGNLTSFSEQQFVACDT-YNYGCDGGWMFAAMQYVADFGILVSEEAYPYMGVMMTY----------NLPTPTCDTDLLNSKLEGDGDDIAHIEGYQMVAMGAEYEDLMATYMLKNGPLSIAINANGMDYYVHGIVGCETIAGSEYCEAGAIDAPSDGDSTMEHTCNPTDLDHGVLLVAYGEQDGVDYWVIKNSWAETWGEDGYYRIERGVNKCGVSN 288          
BLAST of mRNA_Ecto-sp13_S_contig16768.4843.1 vs. uniprot
Match: A0A7S2BCN1_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BCN1_9STRA)

HSP 1 Score: 228 bits (581), Expect = 2.250e-68
Identity = 126/274 (45.99%), Postives = 164/274 (59.85%), Query Frame = 1
Query:   16 ETCQSCTRFPELEQYITGDLPTEFDWRDYG-AVTPVKNQQAYCGSCWTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYNQGCNGGWPSISMDYISKNGGIVPESIYPYRKHYMCWKSAVGGSFDESSATPTCSMQLVD-----GNYAATLAIE-VALAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEG-------------IDMGEYCEPLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGERGYYRLVRGVNACGIADDVTTIIV 777
            + C +C  +P    Y  G+LP  FDWR  G  VT VKNQ+ YCGSCW+FST   +EG  Y +      LSEQQLVACDT  + GC+GG+P  +M YIS+ GG++ E+ YPY K    W    G   +E + TPTC    ++     GN +A    + VA+ ED   E+ M   L+ NGP+S++L+A GMDYY  G             ID+   CEP  +DHAVL+VGYG ED + YW+IKNSW  LWGE GYYRLVRG N CG+A+   T ++
Sbjct:  219 QDCAACALYPHFSNYTMGNLPDSFDWRAIGDVVTDVKNQK-YCGSCWSFSTAQDIEGKHYFATGERVRLSEQQLVACDTK-DWGCDGGYPYRAMQYISQVGGMLHEASYPY-KGICAW----GACGNEEAGTPTCDSDTLNTNIKSGNVSAIGGWQMVAMGEDY--EDLMRVALVKNGPISISLNANGMDYYVHGVVGCSNDDCNAGAIDVHTPCEPTALDHAVLLVGYGTEDDIPYWLIKNSWGDLWGEDGYYRLVRGSNHCGVANFAITSVI 483          
BLAST of mRNA_Ecto-sp13_S_contig16768.4843.1 vs. uniprot
Match: A0A7S2W4U9_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4U9_9STRA)

HSP 1 Score: 223 bits (569), Expect = 2.100e-66
Identity = 122/263 (46.39%), Postives = 154/263 (58.56%), Query Frame = 1
Query:   22 CQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQQAYCGSCWTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYNQGCNGGWPSISMDYISKNGGIVPESIYPYRKHYMCWKSAVGGSFDESSATPTCSMQLVDGNYAATLAIEVA---LAEDSMTEEAMARW-LILNGPLSVALDAMGMDYYSEG--------------IDMGEYCEPLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGERGYYRLVRGVNACGIAD 756
            C +C RF     Y   +LP  FDWR+ GAVT VKNQ+ YCGSCWTFST   LEG  +L+   LESLSEQQLVAC+T+ + GC+GG+P  +M YI K GG+V +  Y Y K    W    G      + TPTC  ++++    +     +    L       EA+ R  L+ NGP+S+A +A GMDYY  G              ID    C+P  +DHAVLIVGYG E GV YW+IKNSW   WGE GYYR+VRG N CG+A+
Sbjct:  237 CAACKRFEHFSLYTWDNLPENFDWRELGAVTDVKNQK-YCGSCWTFSTAADLEGTHFLATGELESLSEQQLVACNTA-DWGCDGGYPYRAMQYIHKFGGLVTDDAYGY-KGICAW----GDCGTPVAGTPTCHTEILNAELESKRVASIGGYQLVSLGAEYEALLRLALVKNGPISIAFNANGMDYYLHGVVGCSAENYCDAGAIDHHTPCDPSYLDHAVLIVGYGVEAGVPYWVIKNSWGDAWGEDGYYRIVRGSNHCGVAN 492          
BLAST of mRNA_Ecto-sp13_S_contig16768.4843.1 vs. uniprot
Match: F0Y300_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y300_AURAN)

HSP 1 Score: 217 bits (552), Expect = 8.200e-65
Identity = 124/265 (46.79%), Postives = 159/265 (60.00%), Query Frame = 1
Query:   22 CQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQQAYCGSCWTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYNQGCNGGWPSISMDYISKNGGIVPESIYPYRKHYMCWKSAVGGSFDESSATPTCSMQLVDGNYAATLAIE-VALAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEGIDM-GEY--CEPLEIDHAVLIVGYGEE--DG---VKYWIIKNSWKYLWGERGYYRLVRGVNACGIADDVTTIIVADAT 789
            C +C  +P   +Y  G+LP +FDWR+ GAVT VKNQ AYCGSCW+FST   LEG  YL+   LES + QQLV C+T  N GC+GG+P  +M Y+S  GG+V     PY+K  +                   + +L DG+ A     + VA+  D   E  M   L+ NGPLS+A +A GMDYY  G+D  G+   C+P  +DHAVL+VGYG +  DG   V YW+IKNSW  +WGE GYYRLVRG NACG+A+ V   IV   T
Sbjct:  169 CAACNLYPAFGEYDMGNLPDDFDWRELGAVTRVKNQ-AYCGSCWSFSTAADLEGTHYLATGDLESYAPQQLVECNTM-NLGCDGGYPFAAMQYLSHFGGMVTWETMPYKKIELL------------------NEKLEDGDVAHISGWQMVAMGADY--ESLMRVTLVKNGPLSIAFNANGMDYYVHGVDGDGDMFTCDPTSLDHAVLVVGYGVQHTDGNGKVPYWVIKNSWDDVWGEDGYYRLVRGSNACGVANMVVHSIVKSTT 411          
BLAST of mRNA_Ecto-sp13_S_contig16768.4843.1 vs. uniprot
Match: F0Y012_AURAN (Pept_C1 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y012_AURAN)

HSP 1 Score: 207 bits (528), Expect = 3.080e-63
Identity = 122/262 (46.56%), Postives = 151/262 (57.63%), Query Frame = 1
Query:   22 CQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQQAYCGSCWTFSTTGCLEGAWYLS--GHPLESLSEQQLVACDTSYNQGCNGGWPSISMDYISKNGGIVPESIYPYRKHYMCWKSAVGGSFDESSATPTCSMQLVDGNYAATLAIEVALAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEGI-------------DMGEYCEPLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGERGYYRLVRGVNACGIADDV 762
            C +C        Y  G  PT FDWRD GAVT VKNQ A CGSCW+FST G +EG  +L   G  L SLSEQQLVAC+T  N GC+GG+P  +M Y +  GG+V    Y Y+        A+    + SS TP+C           T  +  AL  D   E+ M   L+ NGPLSV+ +A GM++Y EGI             D    C+P  +DHAVLIVGYG++D + YW+IKNSW   WGE GYYRLVRG NACG+A+ V
Sbjct:    6 CAACALDKTFALYTLGGEPTNFDWRDLGAVTAVKNQ-AECGSCWSFSTCGDVEGTKFLGSGGTILHSLSEQQLVACNTM-NMGCDGGYPFAAMQYAAHFGGLVHLEDYEYK--------AIN---EGSSGTPSCD----------TATLNSALERDDY-EKKMPLALVKNGPLSVSFNANGMEFYVEGIVGCTTGRCKSGAIDHEVPCDPDSLDHAVLIVGYGDDD-INYWVIKNSWGSEWGEAGYYRLVRGTNACGVANMV 242          
BLAST of mRNA_Ecto-sp13_S_contig16768.4843.1 vs. uniprot
Match: A0A7S2BRB8_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BRB8_9STRA)

HSP 1 Score: 209 bits (533), Expect = 5.230e-63
Identity = 117/275 (42.55%), Postives = 154/275 (56.00%), Query Frame = 1
Query:   16 ETCQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQQAYCGSCWTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYNQGCNGGWPSISMDYISKNGGIVPESIYPYRKHYMCWKSAVGGSFDESSATPTCSMQLVDG--------NYAATLAIE-VALAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEGIDMGE------YCE-----------PLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGERGYYRLVRGVNACGIADDV 762
            + C +C R+P  ++Y + + P  FDWRD GAVT VKNQ+ YCGSCWTFST   +EG  +L+   L SLSEQQ+VACD+S + GC GG+   +M Y+ K GG+V     PY+  +M          D    TPTC  + ++          +  +   + VA+  D   E+ MA  L+ NGPLSV ++A GM+YY  GI   E      YCE           P  +DH VL V YG +DG  YW+IKNSW   WGE GYYR  RG N CG+A+ V
Sbjct:   23 DMCAACERYPGFKKYTSENRPDNFDWRDLGAVTEVKNQK-YCGSCWTFSTAADVEGTHFLATDELISLSEQQIVACDSSMD-GCEGGYMYAAMQYVEKTGGLVSYDDMPYKGVFM----------DYMLGTPTCDTEAINSVLKSDDLSKFGHSEGFQFVAMGPDY--EDRMATILLKNGPLSVGINANGMEYYEFGITGCETIAGSTYCEAGSISTTTPCDPTSLDHGVLAVAYGVQDGTDYWVIKNSWGSEWGEDGYYRQTRGDNHCGVANMV 283          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16768.4843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G512_ECTSI1.340e-17290.15Cathepsin-like proteinase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JC15_9PHAE8.310e-15362.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y246_AURAN5.240e-8051.59Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CK28_9STRA1.010e-7344.87Pept_C1 domain-containing protein (Fragment) n=1 T... [more]
A0A7S2BSW9_9STRA6.360e-7143.53Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2BCN1_9STRA2.250e-6845.99Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S2W4U9_9STRA2.100e-6646.39Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
F0Y300_AURAN8.200e-6546.79Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0Y012_AURAN3.080e-6346.56Pept_C1 domain-containing protein n=1 Tax=Aureococ... [more]
A0A7S2BRB8_9STRA5.230e-6342.55Hypothetical protein n=2 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16768contigEcto-sp13_S_contig16768:841..2546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score490.3
Seed ortholog evalue5.5e-136
Seed eggNOG ortholog2880.D7G512
Model size798
KEGG koko:K01373
KEGG Pathwayko04142,ko04210,map04142,map04210
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Belongs to the peptidase C1 family
EggNOG OGsCOG4870@1,KOG1542@2759
EC3.4.22.41
Cds size798
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.2360454-CDS-Ecto-sp13_S_contig16768:840..10441681462879.2360454-CDS-Ecto-sp13_S_contig16768:840..1044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16768 841..1044 -
1681462879.2508283-CDS-Ecto-sp13_S_contig16768:1351..15131681462879.2508283-CDS-Ecto-sp13_S_contig16768:1351..1513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16768 1352..1513 -
1681462879.272118-CDS-Ecto-sp13_S_contig16768:1696..17771681462879.272118-CDS-Ecto-sp13_S_contig16768:1696..1777Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16768 1697..1777 -
1681462879.2800107-CDS-Ecto-sp13_S_contig16768:1945..21671681462879.2800107-CDS-Ecto-sp13_S_contig16768:1945..2167Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16768 1946..2167 -
1681462879.2895362-CDS-Ecto-sp13_S_contig16768:2417..25461681462879.2895362-CDS-Ecto-sp13_S_contig16768:2417..2546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16768 2418..2546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16768.4843.1prot_Ecto-sp13_S_contig16768.4843.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16768 841..2546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16768.4843.1

>prot_Ecto-sp13_S_contig16768.4843.1 ID=prot_Ecto-sp13_S_contig16768.4843.1|Name=mRNA_Ecto-sp13_S_contig16768.4843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=266bp
MSDIYETCQSCTRFPELEQYITGDLPTEFDWRDYGAVTPVKNQQAYCGSC
WTFSTTGCLEGAWYLSGHPLESLSEQQLVACDTSYNQGCNGGWPSISMDY
ISKNGGIVPESIYPYRKHYMCWKSAVGGSFDESSATPTCSMQLVDGNYAA
TLAIEVALAEDSMTEEAMARWLILNGPLSVALDAMGMDYYSEGIDMGEYC
EPLEIDHAVLIVGYGEEDGVKYWIIKNSWKYLWGERGYYRLVRGVNACGI
ADDVTTIIVADATVE*
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mRNA from alignment at Ecto-sp13_S_contig16768:841..2546-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16768.4843.1 ID=mRNA_Ecto-sp13_S_contig16768.4843.1|Name=mRNA_Ecto-sp13_S_contig16768.4843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1706bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16768:841..2546- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGACATATACGAGACCTGCCAGTCTTGCACCCGGTTTCCGGAGCT GGAGCAGTACATCACCGGTGACCTCCCCACCGAGTTCGACTGGAGAGACT ACGGGGCCGTCACCCCTGTCAAGAACCAGGTACGTTAGGCGTGCCGATTA GTTCTAGCCGCTGGTTTGACCCATAGAGCACGGGGTCTTCACTCAAAAAC CTATCTCGTATACGTCGAAGTATTTCGTACTACGTTGTAGACATGAGGAT CAGGGTTATGAACTCCCCCCCNNNNNNNNNGTAGGGATGCGAGGTCAATG GTCTAACGACTACGGCATGCACGACTGTGAGTACACCCCCCCCCCCCCCA CTTCTCCTCCGTACCCCGCCTGTCTTGAGCAGGCGTACTGCGGGTCCTGC TGGACCTTCAGCACGACAGGCTGCCTGGAGGGGGCGTGGTACCTCTCGGG ACACCCTCTCGAGTCGCTGTCGGAGCAGCAACTCGTGGCGTGCGACACGT CCTACAACCAGGGCTGCAACGGCGGCTGGCCCAGCATCTCGATGGACTAC ATCAGCAAGAACGGCGGCATCGTGCCGGAGTCCATCTACCCTTACCGGAA GGTGTGGTGGTTTGTTTTGAGAGAGAGGCCTCTTTTCGTGTTGTGTGTAA ATGGATGCTATTGTTGCAGTTAATCTATAGCGCAGGCATTTTTTATTCCG GAGATTTTTGTACGTATTTGTGTTGTGGTGTTTTTTCCACATGACTCCTG CTGCTCGTCAAAAATAGAGCACTACATGTGTTGGAAGTCAGCGGTTGGCG GCAGTTTCGACGAGAGCTCGGCAACGCCTACCTGCAGCATGCAGCTTGTT GTGTTCAGATTGACCGCGTATTGGTGTCTTCCGAGACTCTTCCACCGCCA CCATATGCTTAATCCGCTCACCCGCTGAGATCGCCCAGCCGAATGAACCC CGCCTCCCCATCGTGAATCCTCGTCGCCCCAGGTGTTCATGAACGGTCAC CTGGGAGACCCGGTATGCTCGGACGTTGTGAAGGATGGTAACTACGCGGC CACCCTCGCGATCGAGGTCGCTCTCGCCGAAGACTCGATGACCGAGGAGG CCATGGCCCGATGGCTCATCCTTAACGGCCCCCTCTCGGTGGCGCTCGAC GCCATGGGCATGGACTACTACTCCGAGGGTATCGACATGGGAGAGGTTAG TTCTGATGTTTTTTGTTTTTGCCTATCTGCTGTATCTTCCGAAGAAGACG TCATCGGAAAAGTTTGAGTTTTTGTTGTGCATCCTTGAAGCCCACATCAG GCTTTCGTTCCTGCCTTTTCCTTCGTGGTCGTTGGTATGCCATTTTTTTC TTGTTTTCCAACACACCTACTTTGCGAGCACGATTGTTATTCCCGGCTTG GGAACCACTCCCCGCGCCCCGAAGGGAGCGGCTACCCCCTACGGAGCGAC CACGCCATCCGACCTCCCCCTACCTCTTGCATGTCCCGGCCTCCACCATC AGTACTGCGAACCCCTCGAGATCGACCACGCTGTCTTGATCGTGGGCTAC GGGGAGGAAGACGGTGTCAAGTACTGGATCATCAAGAACTCTTGGAAGTA CTTGTGGGGAGAGCGGGGCTACTACCGTCTGGTACGAGGCGTCAACGCCT GCGGGATTGCGGATGATGTCACCACCATCATCGTGGCGGACGCTACGGTC GAATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16768:841..2546-

>mRNA_Ecto-sp13_S_contig16768.4843.1 ID=mRNA_Ecto-sp13_S_contig16768.4843.1|Name=mRNA_Ecto-sp13_S_contig16768.4843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16768:841..2546- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGACATATACGAGACCTGCCAGTCTTGCACCCGGTTTCCGGAGCT
GGAGCAGTACATCACCGGTGACCTCCCCACCGAGTTCGACTGGAGAGACT
ACGGGGCCGTCACCCCTGTCAAGAACCAGCAGGCGTACTGCGGGTCCTGC
TGGACCTTCAGCACGACAGGCTGCCTGGAGGGGGCGTGGTACCTCTCGGG
ACACCCTCTCGAGTCGCTGTCGGAGCAGCAACTCGTGGCGTGCGACACGT
CCTACAACCAGGGCTGCAACGGCGGCTGGCCCAGCATCTCGATGGACTAC
ATCAGCAAGAACGGCGGCATCGTGCCGGAGTCCATCTACCCTTACCGGAA
GCACTACATGTGTTGGAAGTCAGCGGTTGGCGGCAGTTTCGACGAGAGCT
CGGCAACGCCTACCTGCAGCATGCAGCTTGTTGATGGTAACTACGCGGCC
ACCCTCGCGATCGAGGTCGCTCTCGCCGAAGACTCGATGACCGAGGAGGC
CATGGCCCGATGGCTCATCCTTAACGGCCCCCTCTCGGTGGCGCTCGACG
CCATGGGCATGGACTACTACTCCGAGGGTATCGACATGGGAGAGTACTGC
GAACCCCTCGAGATCGACCACGCTGTCTTGATCGTGGGCTACGGGGAGGA
AGACGGTGTCAAGTACTGGATCATCAAGAACTCTTGGAAGTACTTGTGGG
GAGAGCGGGGCTACTACCGTCTGGTACGAGGCGTCAACGCCTGCGGGATT
GCGGATGATGTCACCACCATCATCGTGGCGGACGCTACGGTCGAATAA
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