mRNA_Ecto-sp13_S_contig16766.4842.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: D8LFK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK0_ECTSI) HSP 1 Score: 263 bits (671), Expect = 4.060e-79 Identity = 134/140 (95.71%), Postives = 138/140 (98.57%), Query Frame = 1
Query: 1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGDKDA 420
+VYD+MTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQI+SGVSYEHAEGRLAALNLCSQLLRRLPE NLDQLSSVFYLALVVRLVSDQA ECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFG+KDA
Sbjct: 477 EVYDIMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIVSGVSYEHAEGRLAALNLCSQLLRRLPEPNLDQLSSVFYLALVVRLVSDQAGECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGEKDA 616
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: D8LFJ6_ECTSI (DRIM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ6_ECTSI) HSP 1 Score: 263 bits (673), Expect = 5.640e-79 Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 1
Query: 1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGDKDA 420
+VYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQI+SGVSYEHAEGRLAALNLCSQLLRRLPE NLDQLSSVFYLALVVRLVSDQA ECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFG+KDA
Sbjct: 2866 EVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIVSGVSYEHAEGRLAALNLCSQLLRRLPEPNLDQLSSVFYLALVVRLVSDQAGECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGEKDA 3005
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: D7G498_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G498_ECTSI) HSP 1 Score: 181 bits (460), Expect = 1.740e-51 Identity = 101/120 (84.17%), Postives = 104/120 (86.67%), Query Frame = 1
Query: 1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVS 360
+VYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHY G F + VS+EHAEGRLAALNLCSQLLRRLPE NLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLL RVS
Sbjct: 430 EVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYSRGRNGCSFASTR----VSHEHAEGRLAALNLCSQLLRRLPEPNLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLGRVS 545
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: A0A6H5JC18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC18_9PHAE) HSP 1 Score: 161 bits (408), Expect = 3.570e-44 Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 1
Query: 145 QIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWF 405
QIISGVSYEHAEGRLAA+NLCSQLLRRLPE NLDQLSSVFYLALVVRLVSDQAAECRAAASTA+RTLLDRVSPAVFQELLEFTGQWF
Sbjct: 30 QIISGVSYEHAEGRLAAINLCSQLLRRLPEPNLDQLSSVFYLALVVRLVSDQAAECRAAASTAIRTLLDRVSPAVFQELLEFTGQWF 116
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: A0A835YZH5_9STRA (DRIM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH5_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.180e-32 Identity = 68/136 (50.00%), Postives = 92/136 (67.65%), Query Frame = 1
Query: 4 VYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGD 411
VYD+M ++ +LAV S R +LRAT Q FL FL+ YP+G KRL+ HL ++ G Y+H EGR+AAL++ L+RRLP LD+ + +F+LAL VR V D A RAAAS A+ LL RVS V+ +L + +WFGD
Sbjct: 2826 VYDIMVEVGKLAVISPRASLRATCSQMFLDFLVTYPVGAKRLEQHLRAVLEGTGYQHEEGRVAALDMARHLIRRLPVPLLDEHAQLFFLALAVRAVGDDARAARAAASAALTQLLTRVSADVYAQLWGYAMRWFGD 2961
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: A0A2P6TXU2_CHLSO (Small subunit processome component 20-like protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TXU2_CHLSO) HSP 1 Score: 116 bits (291), Expect = 1.530e-27 Identity = 61/140 (43.57%), Postives = 85/140 (60.71%), Query Frame = 1
Query: 1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGDKDA 420
+VYDLM ++ EL V S +R+ L FLL YPLGEKRLQ HL +++ +SYEH GR AAL++ +L++ PE + Q + + +L LV RLV+D +++CR + TLL R PA L +F GQW G DA
Sbjct: 2491 EVYDLMNRVQELMVQSQAAPVRSACSSALLQFLLDYPLGEKRLQEHLQFLLTNLSYEHESGREAALDMLGVVLQKFPEQLVGQWAEMVFLPLVARLVNDPSSKCRQMVGACLSTLLRRAPPARRDRLAQFCGQWLGGSDA 2630
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: W1NVA9_AMBTC (DRIM domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NVA9_AMBTC) HSP 1 Score: 110 bits (276), Expect = 1.600e-25 Identity = 56/141 (39.72%), Postives = 88/141 (62.41%), Query Frame = 1
Query: 1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWF-GDKDA 420
+VYDLM +++EL VTS P ++ Q L F + YP+G KRLQ HL+ ++S +SYEHA GR A L + ++ + P+ +D+ S +F+ LV+RLV+D + R T ++ L+ R S V Q +L+ T WF G+K++
Sbjct: 2244 EVYDLMIRVSELMVTSQVPEIQQKCSQVMLQFFMDYPIGSKRLQQHLDFLVSNLSYEHASGREAVLEMLHTIIMKFPQDIVDKQSEMFFFHLVLRLVNDSDKQIRTMVGTVIKVLIGRTSQRVLQHILKSTLSWFMGEKES 2384
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: A0A2P6VR64_9CHLO (Small subunit processome component 20-like protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VR64_9CHLO) HSP 1 Score: 110 bits (274), Expect = 2.980e-25 Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 1
Query: 1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGDKDA 420
+VYDLM ++ EL V S +RA L FLL YPLGEKRLQ HL +++ YEH GR AAL++ + +L + PEA + Q + + +L LV RLV+D +++CRA A+ LL R S L+++ QW DA
Sbjct: 2453 EVYDLMNRVQELMVRSQAAPVRAACSSALLQFLLDYPLGEKRLQEHLQFLLTNAGYEHESGREAALDMLTVVLTKFPEALVSQWAEMIFLPLVARLVNDPSSKCRAMVGAALAVLLRRASAPRRDRLVQYCQQWLAGGDA 2592
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: A0A485KCI0_9STRA (Aste57867_4062 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCI0_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.030e-24 Identity = 55/139 (39.57%), Postives = 83/139 (59.71%), Query Frame = 1
Query: 1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGDKD 417
+VYDLM ++ E+ V S +RA +L FLL YPLG+KRL FH+ +++ +++ + GRL+ALN L+++LP LD + F L LV++LV+D+AA CR A+T + L R+S F E L W+ D
Sbjct: 2214 EVYDLMIRIGEMMVQSQVANVRANCASMYLLFLLDYPLGDKRLNFHVRFVVNNLTFVYESGRLSALNCLHALVKKLPSDLLDVRAQFFLLPLVLQLVNDEAAPCRQLAATVISDLFRRISAKTFTESLALVAPWWSSPD 2352
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: A0A1Y1HR11_KLENI (Down-regulated in metastasis family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HR11_KLENI) HSP 1 Score: 106 bits (264), Expect = 6.630e-24 Identity = 53/136 (38.97%), Postives = 81/136 (59.56%), Query Frame = 1
Query: 1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFG 408
++YDLM ++ +L V S T+R QT L FLL +PLG++RLQ HL + + ++YEH GR AAL + +L + P +D+ F+L LV RLV+D +CRA ++ L+ RV A Q +++F W+G
Sbjct: 2600 EMYDLMIRVGQLMVRSQDTTVRTLCSQTLLQFLLDFPLGQRRLQQHLEFLAANLAYEHPSGREAALEMIHAVLVKFPPEIVDENGDFFFLPLVTRLVNDDKQQCRAMVGAVLKVLMGRVGSAARQRMIDFAMAWYG 2735 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16766.4842.1 >prot_Ecto-sp13_S_contig16766.4842.1 ID=prot_Ecto-sp13_S_contig16766.4842.1|Name=mRNA_Ecto-sp13_S_contig16766.4842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp MTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSback to top mRNA from alignment at Ecto-sp13_S_contig16766:2411..3504- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16766.4842.1 ID=mRNA_Ecto-sp13_S_contig16766.4842.1|Name=mRNA_Ecto-sp13_S_contig16766.4842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1094bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16766:2411..3504- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16766:2411..3504- >mRNA_Ecto-sp13_S_contig16766.4842.1 ID=mRNA_Ecto-sp13_S_contig16766.4842.1|Name=mRNA_Ecto-sp13_S_contig16766.4842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16766:2411..3504- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |