mRNA_Ecto-sp13_S_contig16746.4836.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16746.4836.1
Unique NamemRNA_Ecto-sp13_S_contig16746.4836.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16746.4836.1 vs. uniprot
Match: A0A6H5JFX0_9PHAE (DRIM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX0_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.380e-6
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = -3 
Query:  329 AMNRRGEAVRAMADPFVPLLTRSGMGCL 412
            A+NRR EAVRAMADPFVPLLTRSGMGC+
Sbjct: 2854 AINRRAEAVRAMADPFVPLLTRSGMGCI 2881
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16746.4836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFX0_9PHAE3.380e-689.29DRIM domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16746contigEcto-sp13_S_contig16746:184..598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size417
Hectar predicted targeting categoryother localisation
Exons1
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462878.629964-CDS-Ecto-sp13_S_contig16746:183..5971681462878.629964-CDS-Ecto-sp13_S_contig16746:183..597Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16746 184..597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16746.4836.1prot_Ecto-sp13_S_contig16746.4836.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16746 184..597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16746.4836.1

>prot_Ecto-sp13_S_contig16746.4836.1 ID=prot_Ecto-sp13_S_contig16746.4836.1|Name=mRNA_Ecto-sp13_S_contig16746.4836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
SDSAIDHASSRWVCEFIDMQMDCVFFLCTRGGGCAGGRAMRTGGGQVSSG
ATKTRRGRLTGIPALRGSSHPLAPQNKGNASSNYRSARTHTYARVRLSAA
YNVFHSQNLEGTPYRTSLAAGRTGPPWPAPPPLSYSSL
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mRNA from alignment at Ecto-sp13_S_contig16746:184..598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16746.4836.1 ID=mRNA_Ecto-sp13_S_contig16746.4836.1|Name=mRNA_Ecto-sp13_S_contig16746.4836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=415bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16746:184..598+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGATTCGGCCATTGACCACGCGTCCTCGAGATGGGTGTGCGAGTTCAT
AGATATGCAGATGGATTGTGTGTTTTTTTTGTGTACACGCGGGGGGGGAT
GTGCAGGCGGGCGGGCGATGAGGACGGGAGGGGGCCAGGTTAGCAGCGGC
GCAACAAAAACGAGGAGGGGGCGGTTGACGGGGATTCCGGCCCTCCGTGG
GAGCTCACACCCTCTTGCCCCCCAAAACAAGGGAAATGCAAGTTCGAACT
ACCGTTCTGCACGTACGCATACATACGCCAGGGTTCGCTTGAGCGCTGCC
TACAACGTATTCCATTCTCAAAATCTAGAAGGCACCCCATACCGGACCTC
GTTAGCAGCGGGACGAACGGGTCCGCCATGGCCCGCACCGCCTCCCCTCT
CCTATTCATCGCTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16746:184..598+

>mRNA_Ecto-sp13_S_contig16746.4836.1 ID=mRNA_Ecto-sp13_S_contig16746.4836.1|Name=mRNA_Ecto-sp13_S_contig16746.4836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16746:184..598+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGATTCGGCCATTGACCACGCGTCCTCGAGATGGGTGTGCGAGTTCAT
AGATATGCAGATGGATTGTGTGTTTTTTTTGTGTACACGCGGGGGGGGAT
GTGCAGGCGGGCGGGCGATGAGGACGGGAGGGGGCCAGGTTAGCAGCGGC
GCAACAAAAACGAGGAGGGGGCGGTTGACGGGGATTCCGGCCCTCCGTGG
GAGCTCACACCCTCTTGCCCCCCAAAACAAGGGAAATGCAAGTTCGAACT
ACCGTTCTGCACGTACGCATACATACGCCAGGGTTCGCTTGAGCGCTGCC
TACAACGTATTCCATTCTCAAAATCTAGAAGGCACCCCATACCGGACCTC
GTTAGCAGCGGGACGAACGGGTCCGCCATGGCCCGCACCGCCTCCCCTCT
CCTATTCATCGCTG
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