prot_Ecto-sp13_S_contig16744.4835.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16744.4835.1
Unique Nameprot_Ecto-sp13_S_contig16744.4835.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length154
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16744.4835.1 vs. uniprot
Match: D8LD24_ECTSI (THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD24_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 1.670e-61
Identity = 115/122 (94.26%), Postives = 119/122 (97.54%), Query Frame = 0 
Query:   16 MAEEVAKVGGIYSVLTEEEVEAWVSSEGDPKLPSESITAAFRQAERLFAEEQDGGEGGDSLEINFRDIAIPRLSEILSELVWRVVGGELSVDLAISYLASDKPFANRLRAKEEESGDREGED 137
            MAEEVAK+GGIYSVLTEEEVEAWVSS GDPKLPSESIT AFRQAERLFAEEQDGGEGGDSLEIN+RDIAIPRLSEILSELVWRVVGGELSVDLAISYLASDKPFA+RLRAKEEESGD EGE+
Sbjct:    1 MAEEVAKLGGIYSVLTEEEVEAWVSS-GDPKLPSESITGAFRQAERLFAEEQDGGEGGDSLEINYRDIAIPRLSEILSELVWRVVGGELSVDLAISYLASDKPFASRLRAKEEESGDGEGEE 121
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16744.4835.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD24_ECTSI1.670e-6194.26THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=287... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16744contigEcto-sp13_S_contig16744:1812..3512 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16744.4835.1mRNA_Ecto-sp13_S_contig16744.4835.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16744 1810..3512 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16744.4835.1 ID=prot_Ecto-sp13_S_contig16744.4835.1|Name=mRNA_Ecto-sp13_S_contig16744.4835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
SVARTTSSAREAVLAMAEEVAKVGGIYSVLTEEEVEAWVSSEGDPKLPSE
SITAAFRQAERLFAEEQDGGEGGDSLEINFRDIAIPRLSEILSELVWRVV
GGELSVDLAISYLASDKPFANRLRAKEEESGDREGEDGDAKKKVDEEKEG
GDEA
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