mRNA_Ecto-sp13_S_contig16744.4835.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16744.4835.1
Unique NamemRNA_Ecto-sp13_S_contig16744.4835.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16744.4835.1 vs. uniprot
Match: D8LD24_ECTSI (THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD24_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 1.670e-61
Identity = 115/122 (94.26%), Postives = 119/122 (97.54%), Query Frame = 1 
Query:   46 MAEEVAKVGGIYSVLTEEEVEAWVSSEGDPKLPSESITAAFRQAERLFAEEQDGGEGGDSLEINFRDIAIPRLSEILSELVWRVVGGELSVDLAISYLASDKPFANRLRAKEEESGDREGED 411
            MAEEVAK+GGIYSVLTEEEVEAWVSS GDPKLPSESIT AFRQAERLFAEEQDGGEGGDSLEIN+RDIAIPRLSEILSELVWRVVGGELSVDLAISYLASDKPFA+RLRAKEEESGD EGE+
Sbjct:    1 MAEEVAKLGGIYSVLTEEEVEAWVSS-GDPKLPSESITGAFRQAERLFAEEQDGGEGGDSLEINYRDIAIPRLSEILSELVWRVVGGELSVDLAISYLASDKPFASRLRAKEEESGDGEGEE 121
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16744.4835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD24_ECTSI1.670e-6194.26THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=287... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16744contigEcto-sp13_S_contig16744:1810..3512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score217.2
Seed ortholog evalue5.2e-54
Seed eggNOG ortholog2880.D8LD24
Preferred nameZC3H13
Model size465
KEGG koko:K12837,ko:K12879
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00405,M00406
Hectar predicted targeting categoryother localisation
GOsGO:0001510,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016071,GO:0016556,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034641,GO:0034708,GO:0036396,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045293,GO:0046483,GO:0050789,GO:0050793,GO:0051239,GO:0065007,GO:0070013,GO:0071704,GO:0080009,GO:0090304,GO:1901360,GO:1902494,GO:1990234,GO:2000036
Exons2
EggNOG free text desc.mRNA transport
EggNOG OGsKOG1874@1,KOG1874@2759
Cds size462
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462878.587708-CDS-Ecto-sp13_S_contig16744:1811..20281681462878.587708-CDS-Ecto-sp13_S_contig16744:1811..2028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16744 1812..2028 -
1681462878.598753-CDS-Ecto-sp13_S_contig16744:3267..35121681462878.598753-CDS-Ecto-sp13_S_contig16744:3267..3512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16744 3268..3512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16744.4835.1prot_Ecto-sp13_S_contig16744.4835.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16744 1812..3512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16744.4835.1

>prot_Ecto-sp13_S_contig16744.4835.1 ID=prot_Ecto-sp13_S_contig16744.4835.1|Name=mRNA_Ecto-sp13_S_contig16744.4835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
SVARTTSSAREAVLAMAEEVAKVGGIYSVLTEEEVEAWVSSEGDPKLPSE
SITAAFRQAERLFAEEQDGGEGGDSLEINFRDIAIPRLSEILSELVWRVV
GGELSVDLAISYLASDKPFANRLRAKEEESGDREGEDGDAKKKVDEEKEG
GDEA
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mRNA from alignment at Ecto-sp13_S_contig16744:1810..3512-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16744.4835.1 ID=mRNA_Ecto-sp13_S_contig16744.4835.1|Name=mRNA_Ecto-sp13_S_contig16744.4835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1703bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16744:1810..3512- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGTTGCCCGCACTACCTCATCTGCGCGAGAGGCGGTACTAGCCATGGC
GGAGGAAGTGGCCAAGGTGGGCGGGATCTACTCCGTGCTGACCGAAGAAG
AGGTGGAGGCATGGGTGTCATCGGAGGGAGACCCGAAGCTACCGAGCGAG
AGCATTACGGCGGCGTTTCGACAGGCGGAACGCTTGTTCGCTGAGGAGCA
GGACGGCGGGGAGGGCGGCGACAGCCTCGAGATCAACTTCAGGGAGTGAG
TCGTGGTGTGCATGCAAACATGATAGAAGTGGACTATTTACGCACGGAGG
GGCTGGGTGTGTGGTGCTGTCTCCTTTGAGAGATTATTGCAAACCTGCAA
TTTTTGCCGCTGCTCGTACAAGCATTGCATCGCCCTTGACGTCATCACCT
GCGGCCGTTTTTTGGCTCCAGTTCTCCAGACGTGAGGCTGTTAACTTGTA
CCAAGGGAGCTGTGTGTGCAGCAGCAGTGTACCTGTCTGTTACCTGAGTG
CTGTTGTCTAGAGGTGGTACCGCTGTGCACAAGCTTCCCTGCTGTGTGTC
ACGGGGTCTTGTGATCTCGGCTTGAACCTACAGCATTTGGGATGCACACA
CGATTGCAACATGTCCATTTCCAACACCAGCGTAAATCGCGACTCTGACT
GATTTCAAGTCAACACAAAAAAAGAAACATCTTCGCAGAGTTGCACACGT
GCAATCCATAGCCTCGTGAGTCCTATTCGGCACATATTCAATAGATGTGC
AACATCCATGAGTGCAGCTCTATACTCTCCAATTTATGCATACATGTAGG
CGAGGTCCCCAACCATGTTTCTTTCCGTGCCTCTCCGAGGGTGGTGGTGC
GATTGGTCCCTCGTGACGCTTCGTACCGGTGGGTAACAGATGAGAAAACG
ATCCCTTCCAAATTGAGCTGTTGATCACGATCGGTTGTATGCATGACACT
GCCCTCAAGTGTGCTGCATAATCCTGTCCCCCTTCACCTCCAATCAATGG
CTGCTTCGCGCACCCCAGTAGTCGACGTTGATCTCCCTCACTCAGTAAAG
TAAAGTAAACATGCCCTCCCACGCCGTATGGTTTTCGAACACGCCCTGTT
CGACACTCGCGCTGCGGTGTGTTGACCTGCTTCCCCTGCTGGTCGGCTTG
AGGTGAAGGAACAATAATCGCATCGATACCACCACCCGTAAGATCCACAG
CGTTTAGGCCGGCTCCCATTAGCCAGCAGGGCACACACCTCACACAGTTC
GCCTCTCAAAGCACTCCCATCATCCTTGCCCTTTCTCTTCAGTAGCCCTC
GCAGTGTTTTCGTATCAAGAAGACATGTTGGATAAAGCACGCAATCGGGG
AAGTTGGGTAAGGGATAGGGTCTGCGCACCCCCTCCCTCTTGTAATTCCT
CGTGGATTTAATTTATTGCGCAGGCGTTCCGTTCCTATCACTCTGACCAC
CCATGCCCACGACATGCTCGCTGTCTTTTTTCAGCATCGCGATTCCGAGG
CTGTCGGAAATTCTGTCCGAGCTGGTTTGGCGTGTTGTCGGTGGCGAGCT
GAGCGTCGACCTTGCCATCAGCTACCTTGCTTCTGACAAGCCTTTCGCCA
ATCGCCTTCGGGCTAAGGAGGAGGAAAGCGGGGACAGAGAGGGGGAGGAC
GGGGATGCAAAGAAAAAAGTTGATGAAGAGAAGGAGGGCGGGGACGAGGC
GGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16744:1810..3512-

>mRNA_Ecto-sp13_S_contig16744.4835.1 ID=mRNA_Ecto-sp13_S_contig16744.4835.1|Name=mRNA_Ecto-sp13_S_contig16744.4835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16744:1810..3512- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGTTGCCCGCACTACCTCATCTGCGCGAGAGGCGGTACTAGCCATGGC
GGAGGAAGTGGCCAAGGTGGGCGGGATCTACTCCGTGCTGACCGAAGAAG
AGGTGGAGGCATGGGTGTCATCGGAGGGAGACCCGAAGCTACCGAGCGAG
AGCATTACGGCGGCGTTTCGACAGGCGGAACGCTTGTTCGCTGAGGAGCA
GGACGGCGGGGAGGGCGGCGACAGCCTCGAGATCAACTTCAGGGACATCG
CGATTCCGAGGCTGTCGGAAATTCTGTCCGAGCTGGTTTGGCGTGTTGTC
GGTGGCGAGCTGAGCGTCGACCTTGCCATCAGCTACCTTGCTTCTGACAA
GCCTTTCGCCAATCGCCTTCGGGCTAAGGAGGAGGAAAGCGGGGACAGAG
AGGGGGAGGACGGGGATGCAAAGAAAAAAGTTGATGAAGAGAAGGAGGGC
GGGGACGAGGCG
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