mRNA_Ecto-sp13_S_contig16742.4834.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16742.4834.1
Unique NamemRNA_Ecto-sp13_S_contig16742.4834.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16742.4834.1 vs. uniprot
Match: D8LDS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS9_ECTSI)

HSP 1 Score: 542 bits (1396), Expect = 8.980e-187
Identity = 287/326 (88.04%), Postives = 297/326 (91.10%), Query Frame = 1 
Query:    1 HLQLLLRSFDKQEAASTREKTETGSKDVASRAACEFENFTASIAVNGQRPEGFLLRGRSLAGLSRQGQFQRDQAHEQAIRDFTMALSILGSKTACGSRKKSL-GGADGCTRDNSVSQRKHEAKGNEKEIDARNAKPGQDGDTKGNRTNPDVMLSESCSPRVENNRAGADPHEASPAETKQPESHGAEGHLEESREAKCRRDSRSGEVGDGMGEGGSVVGACHYARALSLQQLGRHADAVTDLNVAISEGPVSWQRFWHRATCLVELGEAYRTSAARDLRACMSMAEKGEPPPEMRNFLFHVGLAYLRLGRFVLALELFDRAWKEEV 975
            HLQLLLRSFDKQEAASTREKTETG+KDVASRAACEFENFTASIAVNGQRPEGFLLRGRSLAGLS         +HEQAIRDFT ALSILGSK+A  SR  SL GGADGC RD+SVSQRK EAKG+EKE+DARNAKP QDGDTKGNRTNP+VMLSE+CSPRVE NRAG DPHEASPAETK PESHG EGHLEESREA CRRDSRSGEVGDGMGEGGSVVGACHYARALSLQQLGRHADAVTD +VAISEGPVSWQRFWHRATCLV LGEAYR SA RDLRACMSMAEKGEPPPEMRNFLF VGLAYLRLGRF LALELFD+AWKEEV
Sbjct:  344 HLQLLLRSFDKQEAASTREKTETGNKDVASRAACEFENFTASIAVNGQRPEGFLLRGRSLAGLS---------SHEQAIRDFTTALSILGSKSARSSRTTSLLGGADGCCRDDSVSQRKDEAKGDEKEVDARNAKPEQDGDTKGNRTNPEVMLSETCSPRVEYNRAGTDPHEASPAETKHPESHGDEGHLEESREASCRRDSRSGEVGDGMGEGGSVVGACHYARALSLQQLGRHADAVTDFDVAISEGPVSWQRFWHRATCLVGLGEAYRASAVRDLRACMSMAEKGEPPPEMRNFLFQVGLAYLRLGRFALALELFDQAWKEEV 660
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16742.4834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDS9_ECTSI8.980e-18788.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16742contigEcto-sp13_S_contig16742:3..3843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size975
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-08_003200.1
Cds size975
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16742.4834.1prot_Ecto-sp13_S_contig16742.4834.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16742 3..3843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462878.510966-CDS-Ecto-sp13_S_contig16742:2..551681462878.510966-CDS-Ecto-sp13_S_contig16742:2..55Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16742 3..55 +
1681462878.5201502-CDS-Ecto-sp13_S_contig16742:615..6731681462878.5201502-CDS-Ecto-sp13_S_contig16742:615..673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16742 616..673 +
1681462878.5287414-CDS-Ecto-sp13_S_contig16742:1594..17041681462878.5287414-CDS-Ecto-sp13_S_contig16742:1594..1704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16742 1595..1704 +
1681462878.5375311-CDS-Ecto-sp13_S_contig16742:2342..27921681462878.5375311-CDS-Ecto-sp13_S_contig16742:2342..2792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16742 2343..2792 +
1681462878.5486069-CDS-Ecto-sp13_S_contig16742:3190..33951681462878.5486069-CDS-Ecto-sp13_S_contig16742:3190..3395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16742 3191..3395 +
1681462878.558245-CDS-Ecto-sp13_S_contig16742:3744..38431681462878.558245-CDS-Ecto-sp13_S_contig16742:3744..3843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16742 3745..3843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16742.4834.1

>prot_Ecto-sp13_S_contig16742.4834.1 ID=prot_Ecto-sp13_S_contig16742.4834.1|Name=mRNA_Ecto-sp13_S_contig16742.4834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=325bp
HLQLLLRSFDKQEAASTREKTETGSKDVASRAACEFENFTASIAVNGQRP
EGFLLRGRSLAGLSRQGQFQRDQAHEQAIRDFTMALSILGSKTACGSRKK
SLGGADGCTRDNSVSQRKHEAKGNEKEIDARNAKPGQDGDTKGNRTNPDV
MLSESCSPRVENNRAGADPHEASPAETKQPESHGAEGHLEESREAKCRRD
SRSGEVGDGMGEGGSVVGACHYARALSLQQLGRHADAVTDLNVAISEGPV
SWQRFWHRATCLVELGEAYRTSAARDLRACMSMAEKGEPPPEMRNFLFHV
GLAYLRLGRFVLALELFDRAWKEEV
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mRNA from alignment at Ecto-sp13_S_contig16742:3..3843+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16742.4834.1 ID=mRNA_Ecto-sp13_S_contig16742.4834.1|Name=mRNA_Ecto-sp13_S_contig16742.4834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3841bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16742:3..3843+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATCTCCAGCTCCTGCTGCGTTCTTTCGATAAGCAAGAAGCTGCTTCTAC
CAGGTGCGGTGTTTCGTCGCACGGGCGAGTTGCCCTTGTCCGCGAAAGAG
GAGGATCATATTGGACGTTCTTGTCAGAGTATACGTCAGGGGGGAAGTGA
CTCGCGACGGAGGTGGTAGTAAATGGGGACGCCGAAGGTGAAGGGGAGGG
AGGCATGATTCATGCTCCTTGGCCTCGCCCTCTCTCGTAGTATTTTGAAC
TAAGTCCCGCCCTATCACGGTCGGCGTTCCTCTCTAAAGAGGAAAAGGTC
GGGTATTTAATAGACTCAACACTTACAGCATGGACAACTCACACACGTAG
GTACCGAGGCTGGGTTGGTGGAGTCTTAGAATACCGCTTCTCGTCGCTGC
TTCCCATGTTCGGTTCGTATGTAGGGACCAAACGAAGTAAGGATACAGTC
TATTCCCCCCCTACCCCCGTTTTTTTTTGCCGTTTCTTTAATAAGAAGAG
GGCCGTCTCCAGACGCAAAAATTTCGTAAACTGGAAATATGTTGGGGTTT
ATGGTATTGATAGCGGACTTTCACCTCTTTGTTTTCGTTGACAACGCGTA
TTCCTGAGAACAGGGAGAAAACCGAAACGGGCAGCAAAGACGTCGCAAGC
CGAGCCGCGTGCGAATTTGAGGTACGGCGCCTGCGTTCTTCTCTTCGGAT
GATTGACGGCTCACCCCGGTGTGTCTTTCAGAAACCCAAACTTCACGTGG
AGTAGCTCTCCCACCCCCAAGATGGTGGGCTGCTGAGAACGGTCGCTCCA
GCATTGGAGTTTGGTTGTCGTGAAAGAAGTGTCGAGAGCTGCATTGCGCG
TATAGAGGCATGATGAGTACATGCAGCTTTTCCCAGAGTGAGGAAGAAGT
GGCGGTAGGAAAAGACAGAGCAGGCGAACGGCCAATGAGCCAACATTCCA
ACCCGACTCTTCCATCAGCACCCTATGCCCCCCGTCACCAATCGATGAAT
TTTCAGGCGGCTCTCTGTCTTCTCAAACTCGGACGGCCGTTGGATGCGTT
GAGTTTGGTCGACTCGACGGTGACGGCTAGTTGCTCTCTGGATGCGCGGC
GGTTTCAGCTCCGAGGCTTGATATTGCACGATCTCAGGCGCTTTGAAGAG
GCATCAAAGGTATCTATTTTTGTGAGGCGTACTTCGGCCCACCTGTAGCT
TCCTGTTGGTCACCTCTTGACCGCCACCGCATTTGTTGTTGTTGTGGCCT
ACGACGTAGAAACTTGATGGTTCTTCATGGTGGATCGGTGAGAATCTCAT
AGAAAGGAGATTGATTGATGCGCGGACAGCATCACAACCCTCGAGGCCGA
GTTTTCGACAATGAACGATGTGCAATATGTGTTTGCCGTCCCACCTCGTC
CTTCCACATGGTTCCCAGCACGAGTTTCAATCCTACCCTAGCTGCCCCTT
GCGCGGTTTTGTTCTGCGTGCCGAACGATTGGGTGTCATTTTCTGCTCAG
CGAGCTGTGCTTGAGCTAAGGTACCTCAATCACATATTTTATACCTCTTG
TCTGCCCTCCGGTAATTATGTTGGTCGATCGCGTCGTTTCAGAATTTCAC
CGCGTCCATCGCCGTCAACGGCCAGCGGCCGGAAGGGTTCTTGCTGCGTG
GGCGAAGTCTTGCGGGCCTCTCCAGGCAAGGGCAATTTCAACGCGATCAA
GCGTGCACAAGTCTTTATGATACGTTGGTCGTGGTTCAATCTCGTCACTC
CCAAGTATCCAAATCAACGCTGGGTCCACGTAGTGTTTACCACGTGATTT
TTGGATCACTTTAGTGGTTGCACTACTCTGCGCGTCTACATGGCTCATGT
ATCCGTGTATCAATACCTTGTGATACACTTTGTTCCTTCCCGCCCAACGG
CTACTCCCGTCAAACTTTAAGTCAGAAGCATCCAAGCTGAAGATCAAACA
AATAGAGGGAAAGTCGGGGCACCCGCTGCCGTCTAGCTAAATGCTTATTG
TCCATCACCCGATCACCCACTATTGGCTGGACCAACACGAACTGTTTCCC
GATGCAAAGGTTGCCCAAATCTCTCAGCGATCGCGCCGTAAAAGCCAACA
CCGCGGGTAGTACACCCTCACGTGTCGATTTGTCCAGCGAAAAGTGGTCT
GGTCCGAAGAACAAATACCACCATAGGTCACCAGCATAACTACCAGCGCC
GTTGCATAAAGCACAGAAATGTTTTTTTTTTCATCCTTGGACGCCCAGCC
TCAACTCACACACCCTGTTCGGGGACCGTTTCAATTACAAAACGATTTTT
TTTTGGCTATTGAATCTGATCAACTTCGCCGGTTGAGCAGCCACGAGCAA
GCGATCAGGGATTTCACAATGGCCCTCTCCATTCTCGGATCCAAGACCGC
ATGCGGTTCTCGGAAGAAAAGCCTTGGCGGCGCGGACGGATGCACCCGAG
ACAATTCTGTCTCTCAACGCAAGCACGAGGCGAAAGGAAATGAGAAAGAA
ATCGATGCAAGGAATGCGAAACCCGGGCAAGATGGCGACACCAAGGGCAA
CCGCACCAACCCTGACGTTATGCTGTCCGAAAGCTGCTCGCCAAGAGTTG
AAAACAACCGCGCCGGCGCCGATCCGCACGAAGCGAGTCCCGCAGAAACC
AAGCAGCCAGAATCGCACGGCGCCGAAGGTCATTTAGAGGAAAGTCGAGA
AGCCAAGTGCCGCAGAGATTCTCGAAGCGGTGAAGTTGGAGACGGAATGG
GGGAGGGGGGGTCAGTCGTCGGGGCTTGCCACTATGCTAGGTGAGGTAGT
CCATCTGCCCCCAAAAAAACTGTTGCCTGCGTGCAAGAAAAAAATTCATC
GGAACACCAAACGAAGATTTGTACGCCTACAGAGACTTTGGACTGTTGTC
GGTGGCATGAGAAAGTGTGGCAGGCCGCAATTCAAGCTGGAAAGCGGAAA
AAGTGTCGCGTGTACGTGCAAGCACGTAGTTTGCGTGAAAGAAAATATGT
GAAGCGGAGAATTCGAGAGATGAAACACTAAACAACGTGCAGAGTTTGTC
TTCGTAAAAGCTACATGTAGGTTTGCGCATACAGCCAAGGCTATTATTGC
CGAGCCGTCGCACGACACCGCGCCATGCGGGTTTCAAATCAAGCATCAAT
AGCAGTTGACACGTGAAATGTCGTACCCCATGAAACAGGGCCCTCTCCCT
TCAGCAGCTAGGGCGTCACGCCGATGCCGTCACAGATCTCAACGTCGCCA
TCTCGGAAGGGCCCGTCAGCTGGCAGCGTTTTTGGCACAGGGCTACGTGT
TTGGTGGAACTCGGTGAAGCCTACCGGACCTCCGCGGCACGGGACTTGCG
AGCTTGTATGTCCATGGCGGAGAAAGGGGAGCCGCCACCGGAGGTACGGA
TGCGTGGGTTGTAGGCTTTTCGTCTGCAATACGGCAGCGAGTGGTAGACC
CTAACCATGCACCTTGGAACCGCGAACCAGTCCAACATTGGTCAAAGTTC
GCAAACTGCCTGTTGAATACTTCTCGGAACGATCTTTGGTCGTATCTCTT
TCCTTGTCTCTCTCTGCATCGTCTCTATTTCACTCAACTTTGGACCACTC
CTAGTTTGTACACTGGTCGTGTAGGATGGTACCGCCGCATGCATGTAGAC
TCCGGGACAATCCAACGGCTCTCAAAGAGGCTTCGTTTCATTCCGCCGTT
CGTCCCCTGTGCACCTACCGTCGGTGGCCTTATAAAAAATAGATGCGGAA
TTTCCTGTTCCACGTTGGTCTTGCGTACTTGAGACTCGGAAGATTTGTGC
TTGCCCTTGAGCTCTTCGACCGAGCTTGGAAAGAGGAGGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16742:3..3843+

>mRNA_Ecto-sp13_S_contig16742.4834.1 ID=mRNA_Ecto-sp13_S_contig16742.4834.1|Name=mRNA_Ecto-sp13_S_contig16742.4834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=975bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16742:3..3843+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATCTCCAGCTCCTGCTGCGTTCTTTCGATAAGCAAGAAGCTGCTTCTAC
CAGGGAGAAAACCGAAACGGGCAGCAAAGACGTCGCAAGCCGAGCCGCGT
GCGAATTTGAGAATTTCACCGCGTCCATCGCCGTCAACGGCCAGCGGCCG
GAAGGGTTCTTGCTGCGTGGGCGAAGTCTTGCGGGCCTCTCCAGGCAAGG
GCAATTTCAACGCGATCAAGCCCACGAGCAAGCGATCAGGGATTTCACAA
TGGCCCTCTCCATTCTCGGATCCAAGACCGCATGCGGTTCTCGGAAGAAA
AGCCTTGGCGGCGCGGACGGATGCACCCGAGACAATTCTGTCTCTCAACG
CAAGCACGAGGCGAAAGGAAATGAGAAAGAAATCGATGCAAGGAATGCGA
AACCCGGGCAAGATGGCGACACCAAGGGCAACCGCACCAACCCTGACGTT
ATGCTGTCCGAAAGCTGCTCGCCAAGAGTTGAAAACAACCGCGCCGGCGC
CGATCCGCACGAAGCGAGTCCCGCAGAAACCAAGCAGCCAGAATCGCACG
GCGCCGAAGGTCATTTAGAGGAAAGTCGAGAAGCCAAGTGCCGCAGAGAT
TCTCGAAGCGGTGAAGTTGGAGACGGAATGGGGGAGGGGGGGTCAGTCGT
CGGGGCTTGCCACTATGCTAGGGCCCTCTCCCTTCAGCAGCTAGGGCGTC
ACGCCGATGCCGTCACAGATCTCAACGTCGCCATCTCGGAAGGGCCCGTC
AGCTGGCAGCGTTTTTGGCACAGGGCTACGTGTTTGGTGGAACTCGGTGA
AGCCTACCGGACCTCCGCGGCACGGGACTTGCGAGCTTGTATGTCCATGG
CGGAGAAAGGGGAGCCGCCACCGGAGATGCGGAATTTCCTGTTCCACGTT
GGTCTTGCGTACTTGAGACTCGGAAGATTTGTGCTTGCCCTTGAGCTCTT
CGACCGAGCTTGGAAAGAGGAGGTT
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