mRNA_Ecto-sp13_S_contig16740.4833.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16740.4833.1
Unique NamemRNA_Ecto-sp13_S_contig16740.4833.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16740.4833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16740contigEcto-sp13_S_contig16740:1821..2901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size759
Hectar predicted targeting categoryother localisation
Exons2
Cds size759
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462878.4637458-CDS-Ecto-sp13_S_contig16740:1820..23781681462878.4637458-CDS-Ecto-sp13_S_contig16740:1820..2378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16740 1821..2378 -
1681462878.474461-CDS-Ecto-sp13_S_contig16740:2700..29011681462878.474461-CDS-Ecto-sp13_S_contig16740:2700..2901Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16740 2701..2901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16740.4833.1prot_Ecto-sp13_S_contig16740.4833.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16740 1821..2901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16740.4833.1

>prot_Ecto-sp13_S_contig16740.4833.1 ID=prot_Ecto-sp13_S_contig16740.4833.1|Name=mRNA_Ecto-sp13_S_contig16740.4833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=253bp
MDEDGEVDSQSEVVVGSLSWWMMKSLWQEHTLPEQKLRLSLPDTVLLQDG
HLLHWFFTSAKSGNILKRATKRLEWDGLLRFLVRCASSTTSKGKHTANHA
PHPSSGDVVATARRLKEGRMYPVMLTARDLISLREKHNAHLLDEIVAIQP
FVAKDHFTGCGVFETEFERKGQDNHTTQAVVATYELLRWPESDVKWFGNV
DEFSVANSSRRDGNSFAPQRARNGSAKRVYGVIHRMLAATTKRIIEHVER
AVG
back to top

mRNA from alignment at Ecto-sp13_S_contig16740:1821..2901-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16740.4833.1 ID=mRNA_Ecto-sp13_S_contig16740.4833.1|Name=mRNA_Ecto-sp13_S_contig16740.4833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1081bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16740:1821..2901- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGAGGATGGGGAAGTGGATAGTCAGTCTGAGGTAGTGGTGGGCTC
CCTTTCGTGGTGGATGATGAAGAGCCTGTGGCAAGAACACACCTTGCCAG
AACAAAAGCTGCGGCTTTCGCTGCCGGACACGGTGCTCCTGCAGGATGGC
CACCTCTTGCATTGGTTCTTCACCAGTGCGAAATCTGGCAACATACTCAA
GGTGTGTACATTTCTTGCATTGGTAAGGTCAGAGTACGTGGCATCTACGA
CGGGGTTTCTTAGACGTGTCGCATTTTTCTCTGCTGTAGTGTAGCAAGCG
ATTGGCGCCGAACGCGACCTTGTAGATCTAGATCCACAGCAGCACCTCCT
CTGCAGCCCAATAGTTAGACCTCTCGCCATGAGGCGAAGTACATCTCTCT
TGCGCGCATATTTTTAGTTATTGTTTAGCCTAGATTCTTCGCTATTGTTG
TTGACTTGTAGTTTCTGATAAAATAACAAGTTCTCTCTCGTGTACCCTGT
ACCCTCGTCCAAATATCGTTCAGCGTGCGACCAAGCGGCTGGAATGGGAT
GGGTTGCTCAGGTTTCTCGTTCGGTGCGCATCGAGCACCACGAGCAAGGG
AAAACATACCGCGAATCATGCCCCCCACCCATCATCAGGAGATGTCGTCG
CCACGGCACGAAGACTTAAAGAAGGGCGTATGTATCCCGTGATGTTGACA
GCCCGCGATCTGATTTCGCTGCGGGAGAAGCATAACGCACACCTGTTAGA
CGAGATCGTGGCGATACAGCCCTTCGTGGCCAAGGACCATTTCACCGGAT
GCGGCGTTTTTGAAACAGAGTTCGAGCGAAAGGGACAGGACAATCACACC
ACGCAGGCAGTCGTCGCAACGTATGAGCTCCTGAGATGGCCGGAGAGCGA
CGTGAAGTGGTTTGGAAACGTCGATGAGTTTTCTGTTGCCAACAGCAGCC
GACGAGACGGAAACAGCTTTGCGCCGCAGCGCGCAAGGAATGGTTCAGCG
AAGCGCGTATACGGCGTGATCCATCGAATGCTCGCGGCGACAACCAAGCG
CATCATTGAGCACGTCGAACGAGCGGTAGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16740:1821..2901-

>mRNA_Ecto-sp13_S_contig16740.4833.1 ID=mRNA_Ecto-sp13_S_contig16740.4833.1|Name=mRNA_Ecto-sp13_S_contig16740.4833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=759bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16740:1821..2901- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGAGGATGGGGAAGTGGATAGTCAGTCTGAGGTAGTGGTGGGCTC
CCTTTCGTGGTGGATGATGAAGAGCCTGTGGCAAGAACACACCTTGCCAG
AACAAAAGCTGCGGCTTTCGCTGCCGGACACGGTGCTCCTGCAGGATGGC
CACCTCTTGCATTGGTTCTTCACCAGTGCGAAATCTGGCAACATACTCAA
GCGTGCGACCAAGCGGCTGGAATGGGATGGGTTGCTCAGGTTTCTCGTTC
GGTGCGCATCGAGCACCACGAGCAAGGGAAAACATACCGCGAATCATGCC
CCCCACCCATCATCAGGAGATGTCGTCGCCACGGCACGAAGACTTAAAGA
AGGGCGTATGTATCCCGTGATGTTGACAGCCCGCGATCTGATTTCGCTGC
GGGAGAAGCATAACGCACACCTGTTAGACGAGATCGTGGCGATACAGCCC
TTCGTGGCCAAGGACCATTTCACCGGATGCGGCGTTTTTGAAACAGAGTT
CGAGCGAAAGGGACAGGACAATCACACCACGCAGGCAGTCGTCGCAACGT
ATGAGCTCCTGAGATGGCCGGAGAGCGACGTGAAGTGGTTTGGAAACGTC
GATGAGTTTTCTGTTGCCAACAGCAGCCGACGAGACGGAAACAGCTTTGC
GCCGCAGCGCGCAAGGAATGGTTCAGCGAAGCGCGTATACGGCGTGATCC
ATCGAATGCTCGCGGCGACAACCAAGCGCATCATTGAGCACGTCGAACGA
GCGGTAGGT
back to top