mRNA_Ecto-sp13_S_contig1674.4831.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1674.4831.1 vs. uniprot
Match: D8LIV9_ECTSI (Novel protein containing a T-complex protein 11 domain (Zgc:73347) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV9_ECTSI) HSP 1 Score: 387 bits (995), Expect = 1.190e-126 Identity = 199/203 (98.03%), Postives = 200/203 (98.52%), Query Frame = 1
Query: 7 GGVFVDVRYDEDGMVERGVPVSRLKKRDDPPDFGPLLALLGEVREELVSLTPNNSVLVGEVRAVLSQERLAEMLRDKTLDARQVQRLVGFIAARILNLQAPVRSDGARAWLKGFDASMEAAIASGDPLAIIPLLPRVFEFVFAQMEEIKRDTANAHIRLIAPYLARHGAPYERAKFEARLSSGDVSLERTKAWLSSAVQGFLG 615
GGVFVDVRYDEDGMVERGVPVSRLKK DDPPDFGPLLALLGEVREELVSLTPNNSVLVGEVRAVLSQERLAEMLRDKTLDARQVQRLVGFIA RILNLQAPVRSDGARAWLKGFDASMEAAIASGDPLAIIPLLPRVFEFVFAQMEEIKRDTANAHIRL+APYLARHGAPYERAKFEARLS GDVSLERTKAWLSSAVQGFLG
Sbjct: 457 GGVFVDVRYDEDGMVERGVPVSRLKKLDDPPDFGPLLALLGEVREELVSLTPNNSVLVGEVRAVLSQERLAEMLRDKTLDARQVQRLVGFIAGRILNLQAPVRSDGARAWLKGFDASMEAAIASGDPLAIIPLLPRVFEFVFAQMEEIKRDTANAHIRLVAPYLARHGAPYERAKFEARLSRGDVSLERTKAWLSSAVQGFLG 659
BLAST of mRNA_Ecto-sp13_S_contig1674.4831.1 vs. uniprot
Match: A0A835Z8D6_9STRA (T-complex protein 11-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8D6_9STRA) HSP 1 Score: 177 bits (448), Expect = 1.080e-47 Identity = 97/201 (48.26%), Postives = 128/201 (63.68%), Query Frame = 1
Query: 16 FVDVRYDEDGMVERGVPVSRLKKRDDPPDFGPLLALLGEVREELVS-----LTPNNSVLVGEVRAVLSQERLAEMLRDKTLDARQVQRLVGFIAARILNLQAPVRSDGARAWLKGFDASMEAAIASGDPLAIIPLLPRVFEFVFAQMEEIKRDTANAHIRLIAPYLARHGAPYERAKFEARLSSGDVSLERTKAWLSSAVQ 603
+ D+ Y EDG E VP RL++R D PL ALL E E VS LTP+ + L E RA L L +M LD+ + L+ FI RI+ LQAP R +AWL+ F+ M AA +SGDP A + LLPR+FEFVFA+++E+++D ANAH+ ++ PYL +HG YER KF RLS+G+V+LERTKAWLSS V+
Sbjct: 553 YFDLLY-EDGHAEARVPFVRLRRRGDALHVEPLQALLEEPSREEVSAKLCALTPSRADLNAETRAALDASLLGQMAAQGALDSTTMANLIRFIGQRIMALQAPARVPATQAWLQRFNDDMAAAASSGDPGAPVRLLPRIFEFVFARIDEVRQDAANAHVAVLVPYLQQHGVEYERDKFNERLSAGEVTLERTKAWLSSTVR 752
BLAST of mRNA_Ecto-sp13_S_contig1674.4831.1 vs. uniprot
Match: W7TR13_9STRA (T-complex 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR13_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.020e-18 Identity = 56/180 (31.11%), Postives = 95/180 (52.78%), Query Frame = 1
Query: 100 DFGPLLALLGEVREELVSLTPNNSVLVGEVRAVLSQERLAEMLRDKTLDARQVQRLVGFIAARILNLQAPVRSDGARAWLKGFDASMEAAIA-SGDP---LAI---------IPLLPRVFEFVFAQMEEIKRDTANAHIRLIAPYLARHGAPYERAKFEARLSSGDVSLERTKAWLSSAV 600
DF PLL L+ E+ + L+S+TP+ + L E+ L L ++L LD++ + ++ F RIL L+AP R+ WL + + +G P L++ +P + +FEF+ ++++I D N+HIR P+ HG +ER++FE RL+ G S++R +WL V
Sbjct: 515 DFSPLLVLVQELADRLISMTPSRADLRDEILGSLDVALLKQVLSKDLLDSQLLFSILRFTGRRILCLEAPARNASTERWLVRLKELEDRVLQQAGGPCVRLSLQDSTVSKQWVPSISPLFEFLLEKVDQIHVDIFNSHIRRATPHCRAHGPSFERSQFEERLAQGLTSVDRVLSWLRGVV 694
BLAST of mRNA_Ecto-sp13_S_contig1674.4831.1 vs. uniprot
Match: A0A7S3V2N3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V2N3_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 2.890e-15 Identity = 42/150 (28.00%), Postives = 82/150 (54.67%), Query Frame = 1
Query: 112 LLALLGEVREELVSLTPNNSVLVGEVRAVLSQERLAEMLRDKTLDARQVQRLVGFIAARILNLQAPVRSDGARAWLKGFDASMEAAIASGDPLAIIPLLPRVFEFVFAQMEEIKRDTANAHIRLIAPYL-ARHGAPYERAKFEARLSSGD 558
L+A+L +RE L+ LTPN + L ++ + + + + L++K D + + ++ F+ RI+NLQAP R++ WLK + + A + L P + ++ +I+ D AN H+ ++ ++ +G Y+RA FE +++SG+
Sbjct: 479 LVAVLINIRERLIQLTPNRTDLKNQLNDAIDESLIRQQLKEKAFDKKSLFNIISFLGQRIINLQAPARNEDTNMWLKKLNEAHMDASNDWETLT-----PAAVNYALNEIAKIELDMANFHLSVLGQHVQGENGIKYQRATFEKKINSGE 623
BLAST of mRNA_Ecto-sp13_S_contig1674.4831.1 vs. uniprot
Match: UPI00077A6F39 (T-complex protein 11-like protein 1 n=2 Tax=Acropora TaxID=6127 RepID=UPI00077A6F39) HSP 1 Score: 75.9 bits (185), Expect = 1.470e-12 Identity = 54/167 (32.34%), Postives = 82/167 (49.10%), Query Frame = 1
Query: 91 DPPDFGPLLALLGEVREELVSLT-PNNSVLVGEVRAVLSQERLAEMLRDKTLDARQVQRLVGFIAARILNLQAPVRSDGARAWLKGFDASMEAAIASGDPLAIIPLLPRVFEFVFAQMEEIKRDTANAHIRLIAPYLARHGAPYERAKFEARLSSGDVSLERTKAWL 588
DPP F L+L+GEV+E ++SL P++S L ++ VL + + + LD + RL F+ + + L AP R D + L + I+ L F+ VF+ M+ +K D AN ++ I P+L YER KF+ L S +L TKAWL
Sbjct: 74 DPPVFNQALSLMGEVKENILSLLLPHHSSLRAQINEVLDLDLIKQQANHGILD---IPRLAQFVVSVLSKLCAPARDDQVKKILHNEN--------------IVDL----FKEVFSLMDGMKVDMANFQLQTIKPHLLLQSVEYERKKFKEYLQSNPAALLSTKAWL 219
BLAST of mRNA_Ecto-sp13_S_contig1674.4831.1 vs. uniprot
Match: A0A0L0HQ40_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HQ40_SPIPD) HSP 1 Score: 75.9 bits (185), Expect = 1.790e-12 Identity = 45/159 (28.30%), Postives = 79/159 (49.69%), Query Frame = 1
Query: 124 LGEVREELVSLTPNNSVLVGEVRAVLSQERLAEMLRDKTLDARQVQRLVGFIAARILNLQAPVRSDGARAWLKGFDASMEAAIASGDPLAIIPLLPRVFEFVFAQMEEIKRDTANAHIRLIAPYLARHGAPYERAKFEARLSSGDVSLERTKAWLSSAV 600
+ ++R+ L+++ N ++ VL E + + L + D R + +I ++L L AP+R DA++ + S D + FE + +E++K D AN ++ + P L + YER KF+ L +G V+LERT AWL++AV
Sbjct: 540 IAQIRDALLAMVSENGKFAENIKEVLDVEHIKQQLDNNAFD---FLRCLSYITEKMLQLCAPIR-----------DAAIRSIALSSD-------IVTAFEHILDILEDMKLDLANYRLQALRPILQQQAVEYERTKFDEALIAGAVTLERTAAWLATAV 677
BLAST of mRNA_Ecto-sp13_S_contig1674.4831.1 vs. uniprot
Match: A0A1S8W4A4_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W4A4_9FUNG) HSP 1 Score: 74.7 bits (182), Expect = 4.530e-12 Identity = 49/165 (29.70%), Postives = 82/165 (49.70%), Query Frame = 1
Query: 112 LLALLGEVREELVSLTPNNSVLVGEVRAVLSQERLAEMLRDKTLDARQVQRLVGFIAARILNLQAPVRSDGARAWLKGFDASMEAAIASGDPLAIIPLLPRVFEFVFAQMEEIKRDTANAHIRLIAPYLARHGAPYERAKFEARLSSGDVSLERTKAWLSSAVQG 606
++ LL E+++ L+ + + + E+ +VL + + + + D + G ++L L AP+R A ++ DAS + A A L I+ E+K D +N ++ + P+L R YER+KF+ L G VSLERT+AWLS+AV G
Sbjct: 580 VVLLLKEIKQGLLDMVSTDGKIATEINSVLDFDLIHQQITHGVFDLHKTMHYAG---EKMLQLCAPMRD----ASIRHLDASTDMANALSMMLDIL--------------SEMKLDLSNYRLQALKPHLQRQSVDYERSKFDNALRDGSVSLERTRAWLSTAVAG 723
BLAST of mRNA_Ecto-sp13_S_contig1674.4831.1 vs. uniprot
Match: A0A067CQ89_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQ89_SAPPC) HSP 1 Score: 74.3 bits (181), Expect = 5.950e-12 Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 1
Query: 289 ILNLQAPVRSDGARAWLKGFDASMEAAIASGDPLAIIPLLPRVFEFVFAQMEEIKRDTANAHIRLIAPYLARHGAPYERAKFEARLSSGDVSLERTKAWLSSAV 600
IL+ +AP R+ +AWL D E + A + L R +F FA+++EI+ D+ NAH++++APY+ARHG +E+ KF +L G ++L T WL+ V
Sbjct: 502 ILHGEAPARTSSTQAWL---DRLQETPASEA---AWVEALVRFLQFGFAKVDEIQIDSMNAHLKVLAPYVARHGVEHEQKKFALKLEHGAITLAATSQWLARHV 599
BLAST of mRNA_Ecto-sp13_S_contig1674.4831.1 vs. uniprot
Match: A0A3Q2E545_CYPVA (T-complex protein 11-like protein 2 n=4 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2E545_CYPVA) HSP 1 Score: 71.2 bits (173), Expect = 5.960e-11 Identity = 48/176 (27.27%), Postives = 85/176 (48.30%), Query Frame = 1
Query: 88 DDPPDFGPLLALLGEVREELVS-LTPNNSVLVGEVRAVLSQERLAEMLRDKTLDARQVQRLVGFIAARILNLQAPVRSDGARAWLKGFDASMEAAIASGDPLAIIPLLPRVFEFVFAQMEEIKRDTANAHIRLIAPYLARHGAPYERAKFEARLSSGDVSLERTKAWLSSAVQGFL 612
DDPP++ + LL E+RE L+S L P + + ++ VL + + + ++ +D +QRL +I + + APVR D + S D + + F+ +F + ++ D + I+ + P L R+G YER F+ L +L+RT AW+ SA++ L
Sbjct: 115 DDPPEYQHAIKLLEEIREILLSFLNPGANRMRTQIMEVLDMDLIRQQAENEAVD---IQRLASYIITTMGKMCAPVR-----------DGEIRKLQESTDNIVTL------FKEIFRVLNLMRADHVSLTIQSLKPLLQRNGVQYERETFQGILDKTPTALDRTTAWIKSALEELL 270
BLAST of mRNA_Ecto-sp13_S_contig1674.4831.1 vs. uniprot
Match: A0A485LGX5_9STRA (Aste57867_21181 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGX5_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.260e-10 Identity = 47/166 (28.31%), Postives = 82/166 (49.40%), Query Frame = 1
Query: 112 LLALLGEVREELVSLTPNNSVLVGEVRAVLSQERLAEMLRDKTLDARQVQRLVGFIAARILNLQAPVRSDGARAWLKGFDASMEAAIASGDPLAIIPLLPRVFEFV---FAQMEEIKRDTANAHIRLIAPYLARHGAPYERAKFEARLSSGDVSLERTKAWLSSAV 600
++ L E+R+ + S+ ++ A + +RL M + D L ++ + + +AP R D A+ +AS P + R+ F+ F ++E ++ D+ N H+R+++PYLARHG +E KF R+ GDV+L RT+AWL+ V
Sbjct: 472 VVGTLVELRDAIASVCKQPTLT-----AAVPSDRLMAMAQSGAWDEWTEVVLASWLQV-VADAEAPARRDTTMAY-------RAQLLASAPPASEAEWFDRLCAFIRFGFDKLEMLRLDSMNTHLRMLSPYLARHGVDHEAKKFSQRVERGDVTLARTQAWLARHV 624 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1674.4831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1674.4831.1 >prot_Ecto-sp13_S_contig1674.4831.1 ID=prot_Ecto-sp13_S_contig1674.4831.1|Name=mRNA_Ecto-sp13_S_contig1674.4831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=205bp GGGGVFVDVRYDEDGMVERGVPVSRLKKRDDPPDFGPLLALLGEVREELVback to top mRNA from alignment at Ecto-sp13_S_contig1674:9876..12975- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1674.4831.1 ID=mRNA_Ecto-sp13_S_contig1674.4831.1|Name=mRNA_Ecto-sp13_S_contig1674.4831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3100bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1674:9876..12975- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1674:9876..12975- >mRNA_Ecto-sp13_S_contig1674.4831.1 ID=mRNA_Ecto-sp13_S_contig1674.4831.1|Name=mRNA_Ecto-sp13_S_contig1674.4831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1674:9876..12975- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |