mRNA_Ecto-sp13_S_contig1674.4829.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1674.4829.1
Unique NamemRNA_Ecto-sp13_S_contig1674.4829.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1674.4829.1 vs. uniprot
Match: A0A6H5L7Q5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Q5_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 1.290e-87
Identity = 144/159 (90.57%), Postives = 150/159 (94.34%), Query Frame = 3 
Query:    3 VLARLRIGCPAPAMVALQAKTSGLLKQQGVLLPQIVEECVATSRHLASSATKEGGRAAESPPGLPPAEEEGLRSLLMSSADPNNEVFCVFFKRVLLSLKGMVAGGDAADVCVRNGMQSFVDELRPVGARLHRLFAHNVKVFAGHYGPIVTEAAKAHVLS 479
            VLARLRIGCPAPAM ALQAKT+GLLKQQGVLLPQIVEECVATSR LASSA+KEGG AAESPPGLP  EEEGLRSLLM SADPNNEVF VFFKRVLLSLKGM+AGGDAADVCVRNGMQSFV+E+RPVGARLHRLFAHNVKVFAGHYG IVTEAAKA+ LS
Sbjct:   66 VLARLRIGCPAPAMAALQAKTTGLLKQQGVLLPQIVEECVATSRRLASSASKEGGGAAESPPGLPLVEEEGLRSLLMRSADPNNEVFRVFFKRVLLSLKGMIAGGDAADVCVRNGMQSFVEEMRPVGARLHRLFAHNVKVFAGHYGSIVTEAAKAYALS 224
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BLAST of mRNA_Ecto-sp13_S_contig1674.4829.1 vs. uniprot
Match: D8LIV9_ECTSI (Novel protein containing a T-complex protein 11 domain (Zgc:73347) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV9_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 6.130e-70
Identity = 134/159 (84.28%), Postives = 136/159 (85.53%), Query Frame = 3 
Query:    3 VLARLRIGCPAPAMVALQAKTSGLLKQQGVLLPQIVEECVATSRHLASSATKEGGRAAESPPGLPPAEEEGLRSLLMSSADPNNEVFCVFFKRVLLSLKGMVAGGDAADVCVRNGMQSFVDELRPVGARLHRLFAHNVKVFAGHYGPIVTEAAKAHVLS 479
            VLARLRIGCPAPAM ALQAKTSGLLKQQGVLLPQIVEECVATSR LA                 PPAEEEGLRSLLMSSADPNNEVF VFFKRVLLSLKGMVAGGDAADVCVRNGMQSF +ELRPVGARLHRLFAHNVKVFAGHYGPIVTEAAKA+  S
Sbjct:  754 VLARLRIGCPAPAMAALQAKTSGLLKQQGVLLPQIVEECVATSRRLAXXXXXXXXXXXXXXXXXPPAEEEGLRSLLMSSADPNNEVFRVFFKRVLLSLKGMVAGGDAADVCVRNGMQSFGEELRPVGARLHRLFAHNVKVFAGHYGPIVTEAAKAYAPS 912
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1674.4829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7Q5_9PHAE1.290e-8790.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIV9_ECTSI6.130e-7084.28Novel protein containing a T-complex protein 11 do... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1674contigEcto-sp13_S_contig1674:4128..7971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score229.6
Seed ortholog evalue9.7e-58
Seed eggNOG ortholog2880.D8LIV9
Model size1484
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.regulation of sperm capacitation
EggNOG OGsKOG1981@1,KOG1981@2759
Cds size441
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1674.4829.1prot_Ecto-sp13_S_contig1674.4829.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1674 5130..7930 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462878.197303-UTR-Ecto-sp13_S_contig1674:4127..51291681462878.197303-UTR-Ecto-sp13_S_contig1674:4127..5129Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1674 4128..5129 -
1681462878.2680817-UTR-Ecto-sp13_S_contig1674:7930..79711681462878.2680817-UTR-Ecto-sp13_S_contig1674:7930..7971Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1674 7931..7971 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462878.2126298-CDS-Ecto-sp13_S_contig1674:5129..51921681462878.2126298-CDS-Ecto-sp13_S_contig1674:5129..5192Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1674 5130..5192 -
1681462878.2225542-CDS-Ecto-sp13_S_contig1674:5678..58401681462878.2225542-CDS-Ecto-sp13_S_contig1674:5678..5840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1674 5679..5840 -
1681462878.232504-CDS-Ecto-sp13_S_contig1674:6295..63631681462878.232504-CDS-Ecto-sp13_S_contig1674:6295..6363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1674 6296..6363 -
1681462878.2425294-CDS-Ecto-sp13_S_contig1674:7313..74461681462878.2425294-CDS-Ecto-sp13_S_contig1674:7313..7446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1674 7314..7446 -
1681462878.252049-CDS-Ecto-sp13_S_contig1674:7915..79301681462878.252049-CDS-Ecto-sp13_S_contig1674:7915..7930Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1674 7916..7930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1674.4829.1

>prot_Ecto-sp13_S_contig1674.4829.1 ID=prot_Ecto-sp13_S_contig1674.4829.1|Name=mRNA_Ecto-sp13_S_contig1674.4829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
MVALQAKTSGLLKQQGVLLPQIVEECVATSRHLASSATKEGGRAAESPPG
LPPAEEEGLRSLLMSSADPNNEVFCVFFKRVLLSLKGMVAGGDAADVCVR
NGMQSFVDELRPVGARLHRLFAHNVKVFAGHYGPIVTEAAKAHVLS*
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mRNA from alignment at Ecto-sp13_S_contig1674:4128..7971-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1674.4829.1 ID=mRNA_Ecto-sp13_S_contig1674.4829.1|Name=mRNA_Ecto-sp13_S_contig1674.4829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3844bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1674:4128..7971- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCTGGCACGGCTGCGTATCGGGTGCCCGGCTCCGGCGATGGTAGCC
TTGCAGGTGCGTGCTTTGTTTGCTGGCAAGGTGCGTAGGGCTCGGTGAGG
TTGGGGTGCGGGTTTGAGGTTTTGGCTTGACAACATGAAAACTTCAAATC
TCCTGCGAGATCCGGCCGTCCGTGCGTTTGCACGCACACCCGTATGTAGT
GCCAGGACCATCTCCCAACGTTGTCCCTCCACAATGATAGCGAAAACCAC
CCACCGCGAGCTTCCCTTGCAGGACAACGCGGCCCTAAAAACCTTCAACC
GCGTGCGCATAGGAGAACTTCCCTGGCCAACTTTTTCGAAAGGCGTTGCT
ATGTGAACGCCATGGCGTTCCTCTGTTGTTGTGGTCAGTCCCGGCTCGTT
GATTACCCGATATCGTCTCTCTTTGTTCTAAATGTTCTCCTCTATGTTGC
TGTGTACTAGTGCATCGCATCGCGTTACTATATGCTCGCCCTTCTTTCCT
CTCTTGTGATGTTCCTGGGGCGTAGGCGAAGACTAGCGGCCTCCTGAAGC
AGCAAGGCGTGCTCCTGCCGCAGATAGTGGAGGAGTGCGTGGCAACCTCT
CGGCATCTGGCGTCGTCTGCTACAAAGGAGGGAGGGAGGGCCGCAGAATC
GCCTCCAGGTATATATGTCAATCCACGAGTCTCTCCAGCCTTGGGTAGGG
AAAGGATGACGTTGGGGGTTGCTCCTGCTGCTATTGGGTGCCGCTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGCAATGTTGCTTTGTTTCTGCTGTTGTT
CTTGCTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGCGGTTG
TGCCACCGCTGTCGCGCACGCTGCTACCCCCGGGTTTCAATCCTTTTCGA
AACGCCGGTATCGTTGGTTCGGGGGCGAACGGGGATGTCTTACTCTTTAC
TATTGCTTGGTGCTGACTTTTCTTGTCGCGGCCGACGGGGGGGAGCGTCG
TAGATCGGACAAATAAGCCAAGAGCAACAATGATGTCCACAAGCAATGTA
ACAACCGGTGTTCTGAGGCGATTGGCATAATCATGGGCTGGTAGGGTAAC
CTATCGGTATGTCCTCTCCCAGTCCAATCCATTAGACTGTCCTCAAGGTT
CATCGAAGTGTCTGCACGTGGGGAGAGACTCCATCCGTAACAGGGTTCAA
AGCAAACCTCGAGAATGTGGGGAGCGTGCTACATTCGACGCTCGCGCTAT
GGCATGCAACGAACCACGGCTTAAACATTGTTTGGTTGTCTATTCTGTCG
ACGAGTGAGCTACATAGCAACGACACAGGCACGCGTGATCAGTCGGTAGA
TGGTAGTGTGTGTGGTGGAGAGCAAGGTTGTGGCGTATGAGGTGACACAC
CTCGATACATTGACTCCTTATGACCAGAATCTCGTGCTCCTATCTTCCCG
CCCATCGATAACTGACGCCGAAAACACATCAACTCATCACAACCCTCTCC
CCCCTTCATGGTATATTTGTTCACTGAGGACCCGCCGCAGAACAAATGTT
TTGTCTGTTTCTGCCATTTTTAACGCAACAATCTCTACCTACCTTCGCTG
TTTGTCAGGCCTGCCCCCCGCAGAGGAGGAAGGGCTAAGGAGCTTGCTCA
TGAGCAGTGCCGACCCCAACAACGAGGTAAACCGCATGGTCATACCACAT
GATTTAGCGCGCGGTACATGGATTACTTGCTGCTGCGAGGCAGCAGCTTT
GCCTCAAGATTCGGTGTGTTGTGCACGCCGTTCGTCGCCGCCGCCGCCGC
CGCCGCGGGCTAATTCGTTGATTGGGACAACTCGGAGAGGACTGCCCGAC
CGAGGCGGTTGCTCTGTTTTTCGTTCTGTGCGAGGTGTTGCATCTGTCAG
CGCCCCACAGGGACGTTTGGCATCGACCCGAGCAAGCTACCGAAAAATGC
GCAATAATACCGCTTTGCGCCGCCCATCCCCGGCCATGCACCCGCCCTGC
CTCCCTCGATGTTTCTTTACGTTTATGCGTGTGTGGTCCTCTTCATGTTT
GTATTTGTATCAAAAATTTGTTCATAAATTTACGTACAAATACTGAAACC
GGTTTCATGCACAACGCGCCGCTCCTCCCAGGTTTTCTGCGTGTTCTTCA
AGCGCGTTCTTCTATCCCTGAAGGGGATGGTCGCCGGAGGGGATGCGGCG
GACGTCTGCGTGCGCAACGGCATGCAGTCCTTCGTGGACGAGCTGCGGCC
TGTGGGGGCCAGGCTGCACCGCCTTTTCGCCCACAACGTCAAGGTACACT
CTCAAACAGACTACCAGCACTATTGTATTGTAACTGCCTCATGGATGTGG
TACCAGATTCGTTCAAGACAAGGTTAAGGTAGACTCTCATATGTAGTCTA
ACAGCAGTATGTGACTGCCGTATCTACGTGGGTACCAGATGTATTTGTCG
AAGACAAGCTATTATAAGTCTACGACCGAGATTCCCCAACGCAGCGGTAG
GAAGAAACCGTTGCATAAATAGTAGTTCCCCTCGTCTTCGTCTTTAGGGA
GTTTTTGATTTGATGACGTCATTGATCGCGTTGTTTCCCTGCGTTCCGCC
AACACGACGGAGGAGAACGCAATACGCCCCCCTCAGGTGCAATCCGAGAC
TGACTCCCGAGGGATCTACATTCGTAGACATCTTAGGGAACCAACGTTCA
TGAAAAGTACCACACTTGATGAGCGGGGTTGCTGTCCGTCCCCCTCCCCC
CCTGCTCTTGGCTGTTTCCTACCCACCAGGTGTTCGCCGGGCACTACGGC
CCGATCGTCACGGAGGCTGCAAAGGCCCACGTTCTGTCGTGAGGAGAGGC
GCACCACGTGGCCCATGGTATGACTGTAGGCTTGTTAGAAACACCGCACG
TTTCTTGGTTTTGGCGGATTCCCTGTGTTGCATTCGAGGTGTCGTGAGCA
CTGCTTCTTTTCCGGGGGGTTTGGTAGTCGGGATGATGATGTGGGGGGGC
TTGGAGGAATCGCTTTCTCTTTGGTATTCCCGGATTCGTGGCTTTCATAA
AATGTTGATGTAGCCAAGACCAACAATGGCGTTCGGGCAGAAACGACTAC
AGTAGTGTTTACTCACTCCCAGATAGACAGAGAGACAGAGAGACAGAGAG
TGATGAAAGGAGGGGGGGGGGAATGTAGCAAGACTAACGGTGTTTGAGCA
GAGAGAGATGAAAAGGGGGGTATGTATGCGAATGATGCTTTTCTCTTGAT
TCCAGGGCAAGCCGTGAAGGAGCTAGTTTGGGGAACACCCTAGGCGTGAA
GGTGGAGTTGAAAGGAACGACCCACACGTGAACGCGCGAGAGGCTACACC
TAGGGTTGGAATCAACTGACTGGTCAGGGTGGCATCCATTCGCCCTTGTC
GAGCAGTGCACCTTGCGTTGATTGGCCTGCAAAGGCTTTCGACTGGAAGT
CGGTTCTTGTATGCAAACGTCGTCACGCGTAATATGGCATACGTAAGAGG
TGTTTCTGTTGGACTTGCGTCACGCAAACTATGCTGCAACAAGTCCCCTT
AAGTCCCGGCTTGAGAGGCTAGTTTTTGTCGTTCTGAGACGCTGTGTTGT
GTGTGTCCTACTTCGATTCATTGGGGACGATCTTTACACCTTCGCATGTA
TTTCGTTTTTTGATCCGCTTTAGCCAGGGCCACCCAGAAGCCCCACGGAG
TCTCCTTTCATGTCGTTCTTCCGCCTTCCTTCTTTGTGGTGTGCATGCTT
TCTTGTATGCATTATTTAGCGTGATTGAGACATGCATGCCGCGCTTGCCA
CGAGCGGTTGTCCAGGCTTCCTTCCGTCAGCCGATAAGCAGCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1674:4128..7971-

>mRNA_Ecto-sp13_S_contig1674.4829.1 ID=mRNA_Ecto-sp13_S_contig1674.4829.1|Name=mRNA_Ecto-sp13_S_contig1674.4829.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1674:4128..7971- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAGCCTTGCAGGCGAAGACTAGCGGCCTCCTGAAGCAGCAAGGCGT
GCTCCTGCCGCAGATAGTGGAGGAGTGCGTGGCAACCTCTCGGCATCTGG
CGTCGTCTGCTACAAAGGAGGGAGGGAGGGCCGCAGAATCGCCTCCAGGC
CTGCCCCCCGCAGAGGAGGAAGGGCTAAGGAGCTTGCTCATGAGCAGTGC
CGACCCCAACAACGAGGTTTTCTGCGTGTTCTTCAAGCGCGTTCTTCTAT
CCCTGAAGGGGATGGTCGCCGGAGGGGATGCGGCGGACGTCTGCGTGCGC
AACGGCATGCAGTCCTTCGTGGACGAGCTGCGGCCTGTGGGGGCCAGGCT
GCACCGCCTTTTCGCCCACAACGTCAAGGTGTTCGCCGGGCACTACGGCC
CGATCGTCACGGAGGCTGCAAAGGCCCACGTTCTGTCGTGA
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