mRNA_Ecto-sp13_S_contig1674.4828.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1674.4828.1
Unique NamemRNA_Ecto-sp13_S_contig1674.4828.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1674.4828.1 vs. uniprot
Match: D8LIW0_ECTSI (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIW0_ECTSI)

HSP 1 Score: 360 bits (924), Expect = 1.150e-114
Identity = 229/309 (74.11%), Postives = 238/309 (77.02%), Query Frame = 1 
Query:  169 QAACLARGEEIYGETGDTGETDSELLARSVLKRCLDLGSRDNMTIVLADLRRRRRRARPKASPPKLSPTMGGGYGGDENRGGVVAA-IGAPRVGNRGGAEAAPTV---------AAAVTATA------------------GAGDKGDLGPSVRVGDRDGSVGGSAVSVSTGGGDPVVDGSVAAAAAEAGADSREALRQDGGGYGVGANDGSSLAGHVGDGRGGSSGTRPGESAGVSGLTAGGGGVNNTSKIAVEPGGVAVSGIEGVSGKTSTGGAAAAVVGDGVGETLTAREAGGLLRPPEAVDGNQER 1011
            QAACLARG+EIYGETGDTGETDSELLARSVLKRCLDLGSRDNMTIVLADLRRRRRRARPK SPPKLSPT+G G GG E+RGGV AA IGAP +GNRGG EA PTV           A TATA                  GAGDKGD GPS+RV   D SVGGSAVS             VAAAAAEAG  +REALRQ+ GG GVGA DGS LAGHVGDGR GSS TRPG+SAGVSGLTAGGGG NNTSKIAVEPGGVAVSG+ GVSGKTSTGGAAA V GDGVGE LT REAGGLLRPPEAVDGNQER
Sbjct:  107 QAACLARGDEIYGETGDTGETDSELLARSVLKRCLDLGSRDNMTIVLADLRRRRRRARPKVSPPKLSPTIGEGRGGVEDRGGVAAAAIGAPLLGNRGGTEAVPTVXXXXXPAAVVGASTATAXXXXXXXXXXXXXXXXXAGAGDKGDFGPSMRVSGGDSSVGGSAVSXXXXXXXXXXXXXVAAAAAEAGVGTREALRQNAGGDGVGAGDGSFLAGHVGDGRDGSSRTRPGQSAGVSGLTAGGGGANNTSKIAVEPGGVAVSGVVGVSGKTSTGGAAAVVEGDGVGEALTVREAGGLLRPPEAVDGNQER 415
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1674.4828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIW0_ECTSI1.150e-11474.11PPM-type phosphatase domain-containing protein n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1674contigEcto-sp13_S_contig1674:1188..3481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score288.1
Seed ortholog evalue3.7e-75
Seed eggNOG ortholog2880.D8LIW0
Model size2097
KEGG koko:K04457,ko:K04461
KEGG Pathwayko04010,ko04013,map04010,map04013
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0631@1,KOG0697@2759
EC3.1.3.16
Cds size720
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462878.1254253-UTR-Ecto-sp13_S_contig1674:1187..14811681462878.1254253-UTR-Ecto-sp13_S_contig1674:1187..1481Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1674 1188..1481 +
1681462878.1453774-UTR-Ecto-sp13_S_contig1674:2201..23611681462878.1453774-UTR-Ecto-sp13_S_contig1674:2201..2361Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1674 2202..2361 +
1681462878.1557748-UTR-Ecto-sp13_S_contig1674:2558..34811681462878.1557748-UTR-Ecto-sp13_S_contig1674:2558..3481Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1674 2559..3481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462878.1364062-CDS-Ecto-sp13_S_contig1674:1481..22011681462878.1364062-CDS-Ecto-sp13_S_contig1674:1481..2201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1674 1482..2201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1674.4828.1prot_Ecto-sp13_S_contig1674.4828.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1674 1482..2201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1674.4828.1

>prot_Ecto-sp13_S_contig1674.4828.1 ID=prot_Ecto-sp13_S_contig1674.4828.1|Name=mRNA_Ecto-sp13_S_contig1674.4828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
MTIVLADLRRRRRRARPKASPPKLSPTMGGGYGGDENRGGVVAAIGAPRV
GNRGGAEAAPTVAAAVTATAGAGDKGDLGPSVRVGDRDGSVGGSAVSVST
GGGDPVVDGSVAAAAAEAGADSREALRQDGGGYGVGANDGSSLAGHVGDG
RGGSSGTRPGESAGVSGLTAGGGGVNNTSKIAVEPGGVAVSGIEGVSGKT
STGGAAAAVVGDGVGETLTAREAGGLLRPPEAVDGNQER*
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mRNA from alignment at Ecto-sp13_S_contig1674:1188..3481+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1674.4828.1 ID=mRNA_Ecto-sp13_S_contig1674.4828.1|Name=mRNA_Ecto-sp13_S_contig1674.4828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1674:1188..3481+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCATTGCAAACACTCGCGTTTCGCGTTGTCCTTGCGTACCCTGCGCAA
CCTTACTCCTATTATTTTTCGTCATGGCACAAGAAATCCATCATCATCTC
CACAGACAACAGTAGCCTGGGATAGACGTAACAAATTCACAGCATCGCTC
CTTTTCTGCGAAAAAGAACAGGCGGCCTGCCTCGCCCGAGGGGAGGAGAT
CTACGGAGAAACCGGAGACACCGGAGAAACCGACAGCGAGTTGCTCGCGA
GGTCCGTCCTGAAGCGCTGCCTCGACCTCGGCTCGCGCGACAACATGACG
ATCGTTCTCGCGGACCTAAGACGGCGGCGGCGGAGGGCAAGGCCGAAGGC
GTCGCCCCCGAAGCTGTCGCCGACGATGGGAGGGGGTTACGGTGGTGACG
AAAACCGGGGGGGGGTGGTGGCGGCGATCGGGGCACCCCGGGTCGGGAAT
CGTGGCGGCGCCGAGGCGGCACCAACGGTAGCAGCAGCGGTGACGGCAAC
AGCGGGTGCTGGAGACAAAGGAGACTTGGGCCCTAGCGTGAGGGTTGGTG
ACCGTGACGGTAGTGTTGGCGGCAGCGCGGTGTCCGTGTCGACGGGAGGG
GGTGACCCCGTTGTAGACGGCTCGGTAGCAGCCGCTGCAGCGGAGGCGGG
AGCGGACTCAAGAGAAGCGTTGCGCCAGGACGGCGGTGGCTACGGCGTGG
GTGCGAACGATGGATCAAGTCTGGCGGGGCACGTCGGCGACGGCCGGGGT
GGGTCGTCGGGAACGCGCCCGGGAGAATCAGCGGGCGTGTCAGGGCTGAC
GGCCGGAGGCGGGGGCGTAAACAATACCTCAAAAATCGCGGTAGAGCCCG
GTGGCGTTGCTGTCAGCGGGATAGAAGGCGTTTCGGGAAAAACTAGCACC
GGAGGCGCGGCGGCTGCAGTCGTAGGCGATGGCGTGGGAGAGACCCTGAC
AGCGCGGGAGGCCGGCGGGTTGCTGCGGCCACCAGAAGCGGTAGACGGCA
ACCAAGAGCGGTAGTAGCATCGGTGGTGAAGGTTTTCAAAAGGTGTTTTT
GACTCATGCCAAGATTGCTTGCTTATAGACAGGAAGCAATACCAAACACT
TGGTAGACGTCTTCACTACAGCGTACCGAGTGTGCCAGCAGATAAGTTGT
TGTTGCTGGGGGGGGGGGGGGGGGGGGAGCCCCCCTTCTGGTGGTTTGGG
GAAAATGGGGCGACGGAGGGTAGATTGCCCCTGTGAAGAACAACCGCGGG
ATTCGCATNNNNNNNNNNATCTCTATGTGTTTTCTTTTCCTCTGTGTGGG
GGGTGTTGTTCTGGTGGTTGTTGGTGGGGGGGGGGGGGGGGGGGGGGGGG
GGTAGTAGCACCTCTTCTGGTGTTTTGGGAACACTGAGGCGACGGAGGTT
AGATCGCCCCTGTCAAGACCAGCCGCGGGATTCGCATGCCCGTCTACTCC
CTTAACGCCCGATTTTTTCGTGTGCAGTAGCTGCTCCTGGGCGATACAAC
ATGGCCAGGAACTGTCCGACGCCCAGAAATCGGAGGTTTCTTGGGGAGCA
CATTGAGACAGCAGTGGTAAACTTGCTCAGGGGCGTATGTTGCAACCCCA
CCCCATCCCCCCCCCTGGCGCCCGATAATAATGTTCATCTAGGGATGCTG
CCGTCATGCTAGTCGTAGTGTAGTACCCTCGTTGGAGCTCGTATGTGTTG
TTGCGGAGAGAGGGACGTGGGTGTTCTTAGCTGTTGTGGTTCTCATGGTC
TTGGTGAACTCTCCGTTTTCCCATTCCCGCGCTTTTCTAAGGCGTAGTGT
TTTGTTTTGTCCGGCCCCTCCGTGCGGACACGCTTACGGTCCTAATTCGA
TGCGGCGGTCGTGGGAAAACGTGGTACGTGTGGTTGTAGCAGATAGATGT
GTGGAGGTGAGGTTTTTGTTTTTCAGGCGCTACGATAGACGCCGTTTTGC
GGTTCCATATAATCGATCACCTGTAGATACGCCGTGTGTGGTCATTCATG
TCTTGACGCGTGTTGCGTGCGGGTTGTTTCGTGTGAAGTTACATACTTAA
TATTTCTCTTGCTCTTCGAGATGATGCAGATAGATTTGTGATAGTGGCAG
ATAGGTGTGAGCTGCCTGTAGTCCAGTGAGACGAAGCAAGAGCACGAGAT
GACATTGTTTACTGTAGTGGTGAAAAGTTACTGTGGTGAGCTGGTACACT
CGTGTGACGTGCGCACACGCTTTGACGTGGATTGGAAAGGGGGTTTACTA
CTCATTGTGTCTTCCCTGTTTTTCGCGATACATGTAGCACCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1674:1188..3481+

>mRNA_Ecto-sp13_S_contig1674.4828.1 ID=mRNA_Ecto-sp13_S_contig1674.4828.1|Name=mRNA_Ecto-sp13_S_contig1674.4828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1674:1188..3481+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGATCGTTCTCGCGGACCTAAGACGGCGGCGGCGGAGGGCAAGGCC
GAAGGCGTCGCCCCCGAAGCTGTCGCCGACGATGGGAGGGGGTTACGGTG
GTGACGAAAACCGGGGGGGGGTGGTGGCGGCGATCGGGGCACCCCGGGTC
GGGAATCGTGGCGGCGCCGAGGCGGCACCAACGGTAGCAGCAGCGGTGAC
GGCAACAGCGGGTGCTGGAGACAAAGGAGACTTGGGCCCTAGCGTGAGGG
TTGGTGACCGTGACGGTAGTGTTGGCGGCAGCGCGGTGTCCGTGTCGACG
GGAGGGGGTGACCCCGTTGTAGACGGCTCGGTAGCAGCCGCTGCAGCGGA
GGCGGGAGCGGACTCAAGAGAAGCGTTGCGCCAGGACGGCGGTGGCTACG
GCGTGGGTGCGAACGATGGATCAAGTCTGGCGGGGCACGTCGGCGACGGC
CGGGGTGGGTCGTCGGGAACGCGCCCGGGAGAATCAGCGGGCGTGTCAGG
GCTGACGGCCGGAGGCGGGGGCGTAAACAATACCTCAAAAATCGCGGTAG
AGCCCGGTGGCGTTGCTGTCAGCGGGATAGAAGGCGTTTCGGGAAAAACT
AGCACCGGAGGCGCGGCGGCTGCAGTCGTAGGCGATGGCGTGGGAGAGAC
CCTGACAGCGCGGGAGGCCGGCGGGTTGCTGCGGCCACCAGAAGCGGTAG
ACGGCAACCAAGAGCGGTAG
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