mRNA_Ecto-sp13_S_contig1674.4827.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1674.4827.1
Unique NamemRNA_Ecto-sp13_S_contig1674.4827.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1674.4827.1 vs. uniprot
Match: D8LIW0_ECTSI (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIW0_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 7.760e-34
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 ILRSGGYLDETDPRNPRVVCDTLKMSIATSRALGDFDFKSNPSRLPEEQMVSPVPELYTRRR 186
            ILRSGGYLDETDPRNPRVVCDTLKMSIATSRALGDFDFKSNPSRLPEEQMVSPVPELYTRRR
Sbjct:   16 ILRSGGYLDETDPRNPRVVCDTLKMSIATSRALGDFDFKSNPSRLPEEQMVSPVPELYTRRR 77
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BLAST of mRNA_Ecto-sp13_S_contig1674.4827.1 vs. uniprot
Match: UPI0007E68BC2 (protein phosphatase 1B n=1 Tax=Drosophila eugracilis TaxID=29029 RepID=UPI0007E68BC2)

HSP 1 Score: 52.8 bits (125), Expect = 6.050e-6
Identity = 28/76 (36.84%), Postives = 42/76 (55.26%), Query Frame = 1 
Query:    1 ILRSGGYLDETDPRNP--------------RVVCDTLKMSIATSRALGDFDFKSNPSRLPEEQMVSPVPELYTRRR 186
            I R+GG L  T    P               V+ + +  ++A SRALGD++FK+N +R+P  QMVSP P++  R+R
Sbjct:  140 IARNGGGLTSTTDHKPFSPKERERIQNAGGSVMINRVNGTLAVSRALGDYEFKNNMTRMPASQMVSPEPDIIVRKR 215
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BLAST of mRNA_Ecto-sp13_S_contig1674.4827.1 vs. uniprot
Match: A0A817L2E5_9BILA (Hypothetical protein n=7 Tax=unclassified Rotaria TaxID=2631648 RepID=A0A817L2E5_9BILA)

HSP 1 Score: 52.4 bits (124), Expect = 8.650e-6
Identity = 24/45 (53.33%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   52 VVCDTLKMSIATSRALGDFDFKSNPSRLPEEQMVSPVPEL--YTR 180
            V+   +  S+A SRALGDF++K+NP+R P++Q+VSP PE+  YTR
Sbjct:  299 VLIQRVNGSLAVSRALGDFEYKNNPNRRPDQQLVSPEPEITYYTR 343
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BLAST of mRNA_Ecto-sp13_S_contig1674.4827.1 vs. uniprot
Match: UPI001402CF31 (protein phosphatase 1B-like isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001402CF31)

HSP 1 Score: 51.2 bits (121), Expect = 2.130e-5
Identity = 29/72 (40.28%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:    1 ILRSGG---YLDETDPRNPR-----------VVCDTLKMSIATSRALGDFDFKSNPSRLPEEQMVSPVPELY 174
            + R GG   + ++  P NPR           V+   +  S+A SRALGDFD+KS   + P EQ+VSP PE+Y
Sbjct:  153 LYRDGGVHFFTEDHKPCNPREKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKSVDGKGPTEQLVSPEPEVY 224
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BLAST of mRNA_Ecto-sp13_S_contig1674.4827.1 vs. uniprot
Match: A0A813QX85_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A813QX85_ADIRI)

HSP 1 Score: 50.8 bits (120), Expect = 2.980e-5
Identity = 21/40 (52.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   52 VVCDTLKMSIATSRALGDFDFKSNPSRLPEEQMVSPVPEL 171
            V+   +  S+A SRALGDF++K+NP+R P++Q+VSP PE+
Sbjct:  235 VLIQRVNGSLAVSRALGDFEYKNNPNRRPDQQLVSPEPEV 274
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BLAST of mRNA_Ecto-sp13_S_contig1674.4827.1 vs. uniprot
Match: A0A816F368_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A816F368_ADIRI)

HSP 1 Score: 50.8 bits (120), Expect = 3.000e-5
Identity = 21/40 (52.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   52 VVCDTLKMSIATSRALGDFDFKSNPSRLPEEQMVSPVPEL 171
            V+   +  S+A SRALGDF++K+NP+R P++Q+VSP PE+
Sbjct:  261 VLIQRVNGSLAVSRALGDFEYKNNPNRRPDQQLVSPEPEV 300
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BLAST of mRNA_Ecto-sp13_S_contig1674.4827.1 vs. uniprot
Match: E4XF43_OIKDI (PPM-type phosphatase domain-containing protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4XF43_OIKDI)

HSP 1 Score: 50.4 bits (119), Expect = 3.970e-5
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 ILRSGGYLDETDPRNPRVVCDTLKMSIATSRALGDFDFKSNPSRLPEEQMVSPVPEL 171
            I+R+GG           V+   +  S+A SRALGDFD+K++ +RLP EQ+VSP P++
Sbjct:  177 IVRAGGL----------VMTQRINGSLAVSRALGDFDYKTDQNRLPTEQLVSPEPDV 223
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BLAST of mRNA_Ecto-sp13_S_contig1674.4827.1 vs. uniprot
Match: A0A813PNC7_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813PNC7_9BILA)

HSP 1 Score: 50.4 bits (119), Expect = 4.110e-5
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   52 VVCDTLKMSIATSRALGDFDFKSNPSRLPEEQMVSPVPEL 171
            V+   +  S+A SRALGDF++K+N SR PE+Q+VSP PE+
Sbjct:  263 VLIQRVNGSLAVSRALGDFEYKNNSSRRPEQQLVSPEPEI 302
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BLAST of mRNA_Ecto-sp13_S_contig1674.4827.1 vs. uniprot
Match: UPI0006D5044B (probable protein phosphatase 2C T23F11.1 isoform X1 n=2 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D5044B)

HSP 1 Score: 49.3 bits (116), Expect = 9.780e-5
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 ILRSGGYLDETDPRNPRVVCDTLKMSIATSRALGDFDFKSNPSRLPEEQMVSPVPELYTR 180
            IL +GG++++          + +  S+A SRALGDF FK++  + PE+Q+VSP P++ T+
Sbjct:  194 ILEAGGWVEQ----------ERVNGSLALSRALGDFQFKTDTGKTPEKQVVSPFPDVVTK 243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1674.4827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LIW0_ECTSI7.760e-34100.00PPM-type phosphatase domain-containing protein n=2... [more]
UPI0007E68BC26.050e-636.84protein phosphatase 1B n=1 Tax=Drosophila eugracil... [more]
A0A817L2E5_9BILA8.650e-653.33Hypothetical protein n=7 Tax=unclassified Rotaria ... [more]
UPI001402CF312.130e-540.28protein phosphatase 1B-like isoform X1 n=2 Tax=Pet... [more]
A0A813QX85_ADIRI2.980e-552.50Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
A0A816F368_ADIRI3.000e-552.50Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
E4XF43_OIKDI3.970e-543.86PPM-type phosphatase domain-containing protein n=1... [more]
A0A813PNC7_9BILA4.110e-555.00Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
UPI0006D5044B9.780e-538.33probable protein phosphatase 2C T23F11.1 isoform X... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1674contigEcto-sp13_S_contig1674:3..1015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score64.3
Seed ortholog evalue3.1e-08
Seed eggNOG ortholog2880.D8LIW0
Model size282
KEGG koko:K04457,ko:K04461
KEGG Pathwayko04010,ko04013,map04010,map04013
Hectar predicted targeting categorymitochondrion
Exons3
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0631@1,KOG0697@2759
EC3.1.3.16
Cds size255
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462878.050955-UTR-Ecto-sp13_S_contig1674:2..271681462878.050955-UTR-Ecto-sp13_S_contig1674:2..27Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1674 3..27 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462878.0634196-CDS-Ecto-sp13_S_contig1674:27..741681462878.0634196-CDS-Ecto-sp13_S_contig1674:27..74Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1674 28..74 +
1681462878.0730855-CDS-Ecto-sp13_S_contig1674:359..4761681462878.0730855-CDS-Ecto-sp13_S_contig1674:359..476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1674 360..476 +
1681462878.0896697-CDS-Ecto-sp13_S_contig1674:924..10151681462878.0896697-CDS-Ecto-sp13_S_contig1674:924..1015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1674 925..1015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1674.4827.1prot_Ecto-sp13_S_contig1674.4827.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1674 28..1015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1674.4827.1

>prot_Ecto-sp13_S_contig1674.4827.1 ID=prot_Ecto-sp13_S_contig1674.4827.1|Name=mRNA_Ecto-sp13_S_contig1674.4827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MRRTPATHAWFATPSRCRLPRAVHSETSTLSPTRPGCRRSRWSAQCRSCT
RGGGEDPHDEFLILATDGVWDVMDNPGIVSFLEIQ
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mRNA from alignment at Ecto-sp13_S_contig1674:3..1015+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1674.4827.1 ID=mRNA_Ecto-sp13_S_contig1674.4827.1|Name=mRNA_Ecto-sp13_S_contig1674.4827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1013bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1674:3..1015+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCTGCGCAGCGGGGGCTATCTGGATGAGACGGACCCCCGCAACCCACG
CGTGGTTTGCGACACCCTCAAGGTTAGAGGGCGCAAGAGAAAAGGCCAGG
CGTCTTACATTCCCCGGCGGGAGAAGCAGGGCAATGAAGGTGCCATGTGA
CCCTTGCTCTTGACCTCTCTGCGGAGCATTTGTCGGCGCATACGAGATAG
AAGTACATACATGCCCGTTTTGAAGTAACGTTTGATGTCGTCACTTGTAC
CCGTGTGAAAAAATATTTCTCTCCAATAAACGCGTTAAATATCCGACCGT
TTTGTCGGGCGTTTTGGTCCTTTCGTTTGAACGTGATGGTGGTACTGTAC
GTAACAGATGTCGATTGCCACGAGCCGTGCACTCGGAGACTTCGACTTTA
AGTCCAACCCGTCCAGGCTGCCGGAGGAGCAGATGGTCAGCCCAGTGCCG
GAGTTGTACACGAGGCGGAGGCGAGTCCTACTCAAGGAACACTTTTTCAT
TTTTTAGGGTAGTTGGCGTGTGACCACGGAAGGCGCCCGCGTCAGCCGGG
GTAGAAGTTAGTGAGCGGAGCCCGGAACGGTTTTTAATTTGAAGACAACA
ACTATTGACGCAAGTTTTGCTTTCATCGCCGTCTCTCGGCGGTTCCGCCA
ATACCCCGTGCCGTCTTGATTTCTCGTTTACAGAGCTCTGGTGCGGGGTG
AAATCACCGGACTTTCTTTTCACGACGCTTGCCTTGGTTTGCTCTTTGTC
GCCTAGAGTCTCAGGGCCCAGCACTTCCTTGCCTAAAGCCGTTTGTACAA
ATAACGCCGAGTGTGTGGCGCTCGCCTTTCGACCGTGCCCATCTCTTGAC
GTTGACTGACTGTATGCTTGCTTGCCCCTCTCACTCTGCTATCTCTCCCT
CTCTCGCTCCCCCCCCCTCCAGAGATCCTCACGACGAGTTCCTTATTCTG
GCCACGGACGGTGTTTGGGACGTGATGGATAACCCCGGGATCGTGAGCTT
CTTGGAGATACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1674:3..1015+

>mRNA_Ecto-sp13_S_contig1674.4827.1 ID=mRNA_Ecto-sp13_S_contig1674.4827.1|Name=mRNA_Ecto-sp13_S_contig1674.4827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1674:3..1015+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGACGGACCCCCGCAACCCACGCGTGGTTTGCGACACCCTCAAGATG
TCGATTGCCACGAGCCGTGCACTCGGAGACTTCGACTTTAAGTCCAACCC
GTCCAGGCTGCCGGAGGAGCAGATGGTCAGCCCAGTGCCGGAGTTGTACA
CGAGGCGGAGGCGAAGATCCTCACGACGAGTTCCTTATTCTGGCCACGGA
CGGTGTTTGGGACGTGATGGATAACCCCGGGATCGTGAGCTTCTTGGAGA
TACAG
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