mRNA_Ecto-sp13_S_contig16732.4823.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16732.4823.1
Unique NamemRNA_Ecto-sp13_S_contig16732.4823.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16732.4823.1 vs. uniprot
Match: A0A6H5J688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J688_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 1.150e-79
Identity = 130/137 (94.89%), Postives = 132/137 (96.35%), Query Frame = 1 
Query:    1 PAAPVSDADEQHFQTLSPLRKLVVVCHRLKASPTFKRIASPPVMGCIAGMFAGLLPVGRKLLLGRSAPLSPLFDALKGLGNAYLPAAILVLAGSLARPASKPHPVA---AAAAGEASTSAAAVTYQPETKAAFYKKV 402
            PAAPVSDADEQHF+TLSPLRKLVVVCHRLKASPTFKRIASPPVMGCIAGMFAGLLPVGRKLLLGRSAPLSPLFDALK LGNAYLPAAILVLAGSLARPASKPHPVA   AAAAGEAST AAAVTYQP+TKAAFYKKV
Sbjct:    8 PAAPVSDADEQHFETLSPLRKLVVVCHRLKASPTFKRIASPPVMGCIAGMFAGLLPVGRKLLLGRSAPLSPLFDALKSLGNAYLPAAILVLAGSLARPASKPHPVAPAAAAAAGEASTPAAAVTYQPDTKAAFYKKV 144
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BLAST of mRNA_Ecto-sp13_S_contig16732.4823.1 vs. uniprot
Match: D8LM59_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM59_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 9.480e-23
Identity = 52/59 (88.14%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:  226 LKGLGNAYLPAAILVLAGSLARPASKPHPVAAAAAGEASTSAAAVTYQPETKAAFYKKV 402
            ++GLGNAYLPAAILVLAGSLARPASKPHPVA AAAGEAST  AAV YQPETKAAFYKK+
Sbjct:    1 MQGLGNAYLPAAILVLAGSLARPASKPHPVAPAAAGEASTPPAAVAYQPETKAAFYKKI 59
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BLAST of mRNA_Ecto-sp13_S_contig16732.4823.1 vs. uniprot
Match: D8LM60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM60_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 7.180e-22
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 PAAPVSDADEQHFQTLSPLRKLVVVCHRLKASPTFKRIASPPVMG 135
            PAAPVSDAD+QHF+TLSPLRKLVVVCHRLKASPTFKRIASPPVMG
Sbjct:   16 PAAPVSDADQQHFETLSPLRKLVVVCHRLKASPTFKRIASPPVMG 60
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BLAST of mRNA_Ecto-sp13_S_contig16732.4823.1 vs. uniprot
Match: A0A7S1ER62_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ER62_9RHOD)

HSP 1 Score: 70.5 bits (171), Expect = 1.540e-11
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:   85 LKASPTFKRIASPPVMGCIAGMFAGLLPVGRKLLLGRSAPLSPLFDALKGLGNAYLPAAILVLAGSLARP 294
            L  SP + RI +PP++G +AG+  G +P  R L+  + APL  + DALK LG+AY P A+LVLAGSLA P
Sbjct:  321 LMKSPIWARIFAPPIIGALAGLVFGSVPFLRNLVFAKDAPLGAVVDALKTLGSAYTPCAVLVLAGSLATP 390
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BLAST of mRNA_Ecto-sp13_S_contig16732.4823.1 vs. uniprot
Match: A0A5J4YJ85_PORPP (Protein PIN-LIKES 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YJ85_PORPP)

HSP 1 Score: 67.4 bits (163), Expect = 1.810e-10
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:   82 RLKASPTFKRIASPPVMGCIAGMFAGLLPVGRKLLLGRSAPLSPLFDALKGLGNAYLPAAILVLAGSLA 288
            +L   P   R+ +PP++G ++G+  G +PV R+  L   APL  LF++L GLG AY+P A+LVLAGSLA
Sbjct:  284 QLVRHPMVARVFAPPIVGALSGLLVGSIPVLRRAFLADGAPLGILFESLSGLGAAYVPCAVLVLAGSLA 352
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BLAST of mRNA_Ecto-sp13_S_contig16732.4823.1 vs. uniprot
Match: A0A7S2EH78_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EH78_TRICV)

HSP 1 Score: 64.3 bits (155), Expect = 2.050e-9
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  118 SPPVMGCIAGMFAGLLPVGRKLLLGRSAPLSPLFDALKGLGNAYLPAAILVLAGSL 285
            SPPV G   G+  G +P  R LL+G++  LSP F A+K LG+AYLPAA+LVLAGSL
Sbjct:  294 SPPVRGATLGLVVGSVPFLRNLLMGKNGVLSPFFGAVKTLGSAYLPAALLVLAGSL 349
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BLAST of mRNA_Ecto-sp13_S_contig16732.4823.1 vs. uniprot
Match: A0A482USC9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482USC9_9ARCH)

HSP 1 Score: 63.9 bits (154), Expect = 2.920e-9
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   88 KASPTFKRIASPPVMGCIAGMFAGLLPVGRKLLLGRSAPLSPLFDALKGLGNAYLPAAILVLAGSLA 288
            K +   KRI SPPV+G + GM  G  P  RKL+      L+P ++A++ LG AYLPA +LVLAGSLA
Sbjct:  307 KRAELVKRIFSPPVVGSLMGMVVGFTPFLRKLITSPGGLLNPAYEAMRTLGAAYLPAVLLVLAGSLA 373
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BLAST of mRNA_Ecto-sp13_S_contig16732.4823.1 vs. uniprot
Match: A0A7S2URC9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URC9_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 7.510e-9
Identity = 36/67 (53.73%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   88 KASPTFKRIASPPVMGCIAGMFAGLLPVGRKLLLGRSAPLSPLFDALKGLGNAYLPAAILVLAGSLA 288
            K    FK   SPPV G   G+F GL P  R      +  LSP+F AL  LG+AYLPAA+LVLAGSLA
Sbjct:  286 KCKGYFKTFFSPPVAGSALGVFVGLCPPLRHAFCSPNGLLSPVFGALSTLGSAYLPAAVLVLAGSLA 352
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BLAST of mRNA_Ecto-sp13_S_contig16732.4823.1 vs. uniprot
Match: A0A7S3Q171_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q171_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.560e-8
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:  112 IASPPVMGCIAGMFAGLLPVGRKLLLGRSAPLSPLFDALKGLGNAYLPAAILVLAGSLAR 291
            + SPPVMG I G+  G   + R L +   APL+P+F AL+  G AYLP+AILVLAGSL +
Sbjct:  271 LLSPPVMGSILGIIVGSSSIMRNLFITAGAPLAPVFGALRTFGVAYLPSAILVLAGSLVK 330
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BLAST of mRNA_Ecto-sp13_S_contig16732.4823.1 vs. uniprot
Match: A0A7S1Y590_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y590_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.210e-7
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   88 KASPTFKRIASPPVMGCIAGMFAGLLPVGRKLLLGRSAPLSPLFDALKGLGNAYLPAAILVLAGSL 285
            K S  F ++ SPPV+G + G+  G+ P  R++  G S   +PL+ +L+ LG AYLPAA+LVLAGSL
Sbjct:  282 KISSGFAKVRSPPVIGSMTGLAVGMNPFLREIFFG-SGIATPLYSSLQTLGTAYLPAALLVLAGSL 346
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16732.4823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5J688_9PHAE1.150e-7994.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM59_ECTSI9.480e-2388.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LM60_ECTSI7.180e-2295.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1ER62_9RHOD1.540e-1151.43Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4YJ85_PORPP1.810e-1047.83Protein PIN-LIKES 1 n=1 Tax=Porphyridium purpureum... [more]
A0A7S2EH78_TRICV2.050e-958.93Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A482USC9_9ARCH2.920e-950.75Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2URC9_9STRA7.510e-953.73Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3Q171_9STRA2.560e-853.33Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1Y590_9STRA1.210e-748.48Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16732contigEcto-sp13_S_contig16732:2..3156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score63.9
Seed ortholog evalue6.4e-08
Seed eggNOG ortholog2880.D7G8U0
Model size402
KEGG koko:K07088
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.auxin efflux carrier
EggNOG OGsCOG0679@1,KOG2722@2759
Cds size402
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462877.8146544-CDS-Ecto-sp13_S_contig16732:1..641681462877.8146544-CDS-Ecto-sp13_S_contig16732:1..64Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16732 2..64 +
1681462877.828193-CDS-Ecto-sp13_S_contig16732:1301..13721681462877.828193-CDS-Ecto-sp13_S_contig16732:1301..1372Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16732 1302..1372 +
1681462877.8382144-CDS-Ecto-sp13_S_contig16732:1786..18831681462877.8382144-CDS-Ecto-sp13_S_contig16732:1786..1883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16732 1787..1883 +
1681462877.8483133-CDS-Ecto-sp13_S_contig16732:2985..31561681462877.8483133-CDS-Ecto-sp13_S_contig16732:2985..3156Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16732 2986..3156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16732.4823.1prot_Ecto-sp13_S_contig16732.4823.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16732 2..3156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16732.4823.1

>prot_Ecto-sp13_S_contig16732.4823.1 ID=prot_Ecto-sp13_S_contig16732.4823.1|Name=mRNA_Ecto-sp13_S_contig16732.4823.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
PAAPVSDADEQHFQTLSPLRKLVVVCHRLKASPTFKRIASPPVMGCIAGM
FAGLLPVGRKLLLGRSAPLSPLFDALKGLGNAYLPAAILVLAGSLARPAS
KPHPVAAAAAGEASTSAAAVTYQPETKAAFYKKV
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mRNA from alignment at Ecto-sp13_S_contig16732:2..3156+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16732.4823.1 ID=mRNA_Ecto-sp13_S_contig16732.4823.1|Name=mRNA_Ecto-sp13_S_contig16732.4823.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3155bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16732:2..3156+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGCAGCCCCCGTCTCGGACGCCGACGAGCAGCACTTCCAGACACTGAG
CCCCCTCCGCAAGGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGGGACCCCGCAGATTGGGCACGCCAACGAGGGG
GGGGGACACGGGGGGTTCTCATAGCCGTACAGTAGTTCGTTAGGCCATTG
ACCTCGCATCCGTGCAGAGTCGGGACGGAGACGCCGAGCTGTCACCGGGC
CAGGATCTCGCATCACTTAGCAAGGATAGGGGTGTGTGTTCACGGAAGAC
CCCCCCCCCCCACGGGGTCGCTATCCTTGTTTTTCTTAGGCCCTGCGGAG
GGTGTGCCAGCGAATGAGGGGGTTGGGTCAAGGGCACGCACGGTTTGTGG
GAGTCAAGAAGTACCCACATTTTAAAATCCAACTACCGCCCCACAACTGC
TCCTGTCCGTCTTGATCTGATCTATCCGTTGTGAGAAAATCCGTTTTTCT
ACGGATTCTGATATCAGACCCCATGTGCGGCTTAAGAAACCCTTTAAATG
TCAAAACATTGGCGCCGTAGTTACCTCCGCGGACTCCGCGGGAAGGCGCG
TAGAGACGCAATCACGATTTACGCAAGGAAAGCAGATCTCTCTCTTTTTT
TTTGCTCTAAAGTATGGCGTGCTCAGTTTAATTTCGTCTCCGATGCGATT
GCCTGCCACGGTTGTTTTCCATCGAGATCTAGATGGCGCCCCCGCCGAAA
CTTACCAAGCTTCTAAAACCTGAAAAATTCAAGAGCAAGGAAGTTGAGCA
CCATTTGTGAGCTCACTTGATAACCTCACACTAAAACCTATATAGCGACA
ATTCGCAGCATGACCCTAGGAATACGGTAACAACCCCAGCCTCGGCCTCA
ACACCGCAAATTTCAAACAGCTTTAGCATCATTTTTTTGTGCTCTCGTTT
AAGAACCCCTACACTGAAACGAAGAATTGTATATATCGACCATTCGTTGC
ATGACCCTGGGAATACGGTAAAGAACCCCATTCTCGGCCGAAACTATATC
AGAGGAATATGGTTTTTTTTTTTGGTTGTGTTTATTTTTTCATGCCTTTC
GCTGAATACGGACACTGAGGTCCCAGTTCGGACAGATGAAGGTACAAGGA
TCGGAACGGTGTTATTTTCCATGTGAAGACAACAACGACAACAACTGACT
CGTCCCCGTTGTGCCCCTCTCCTGCCCCATCAAACGCGCGCCTCGTTTTT
AAATTCAACGCATATTCTGTTTGAAAATAAATTCATAAAAAATAACGCAG
CTGGTCGTGGTCTGCCACCGGTTGAAGGCTAGCCCGACCTTCAAGCGTAT
CGCCAGCCCGCCGGTGATGGGGTGAGTGAGAGGGACGGGGGGCGGAGGGG
GGCAGGAGAGAGAGAGGGGGATGGAGGGGAGGGAGGGGGAGGGAGAGAGA
GACAGACAGAGAGGGAGGAGGGGGGGAGAGAGGGGGGGGGGGACAGAGAG
AGAGAGAGACTAGAGACAGAGCCAGAGGGCTCTCGGTATTAAGTAGACTC
CTTGTGTCAGCCGATCGTCACAAATTTTGCTTCGCTGTACATTACGGCTA
AGCAGGGTAACACCCGAAACGCTCTTCCGTATCCGTACATTGGCCCGCCT
CTAATTCGACACCAAACCACCGCGATTGATACACCGAACCCCATATGGAT
ATGTTCCGAATGCGTCGTCACACACACGTTTCGCGGCGGAAAGACTCAAA
CAACAACACCAAAACAACACCAAAACAATAAATAGGTGCATCGCGGGCAT
GTTTGCGGGTCTGCTGCCTGTTGGAAGGAAGCTGCTTCTCGGCCGGTCTG
CTCCTCTCTCGCCGCTCTTCGACGCGCTGAAGGTGAAAATTCCCCCCCCC
GCACTCTTCATGGAACTCGCCGAATACCTCACGGCGCTTCGCGCCTGGTG
ATGTGAGAGGCTGGTCCGGTGAGAACCCGGCGTGCTCTTTGTAGGGATGC
GAGGTCAACGGTCTTACGACTACGGCATGCACGACCATGAGTACACCGGG
TAGCTATACTGTGGCATAGGATATGGGCTGAAAAGACGGGGAATTAAATG
TCGAAAGGATAGATATGCCCGGCAACATTCAGCCACCTTTGGCAAAGTAG
GGAGGAACGAATGGCCATAGGTGAACGGTCCTGTGGGAACAACAATGCTC
CGTCCTCTATTGAGGACCCGTGGCCAATGCTCGAACAGAAACTAAACAGG
GCATGCAAAACATGAGCACTCGTCCCTCCCTCCCTCTCTCTCTCCATGCA
TGGCTGGGCTCGGGATTCACCAAAGCTCCCCGTTGGTACCGCGTACGACA
CGAGATAACGCACACCCTGGACCGATTTTCAAGGCTCGATTTTTCAACAA
CAGAGAGAGAGTCATAGCGCCGAAAAACAGCGAAGTTGAAACCGCCCCGT
CTAGAGAAAGCTTTCCGAAAGTGTATCGTTTCGTTCATGCATCCTCTTCG
TCGTGGAGTAATCAAGCAATGATCGGTCCAAGGCGGGGTGTTATCCTGTG
TCGTATACAGTGTCCATATCCGCTGTACGGAAAACCACCCGCCCGCCCGC
CCGCCCTCTAGTTTGGCCCAGGCTCAGGTGGATCTTACAATTATGATTGT
TCCTTAAGTCGGTATACTACGATTGGCCATGTATGCAGGTTTTTATTTTA
GTGTGGAGGTCCTTTAAACCGAGCTCACAACAACAAAATAGTTCCCGAGG
CCTTTGTTCGTATTTTAATTTTTTTCGGTAAGTGTATCTATGTAGAACGT
CTGCGATCCCCCCTCTTTGCCGTGCGTGGGCCAGTGTGCTCTCTTCACTC
GTCAACAATCCCGAACCCTAGCCCTAACCTTAATCCTAAGCAAGGTCTTG
AGCCAAAGAGTCAACTTTTCCTTCGCATCTCTGACAGGAAGCGCTCGCCC
CGTACCTTACCCCCCCCTCTCTCTCTCAATGCAGGGCTTGGGAAACGCGT
ACCTCCCCGCGGCAATCTTGGTTCTCGCGGGCTCCCTCGCTAGGCCTGCC
TCGAAGCCCCATCCTGTTGCAGCGGCGGCGGCGGGAGAAGCGTCGACGTC
AGCGGCTGCGGTGACATACCAGCCAGAAACTAAGGCTGCCTTTTACAAGA
AGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16732:2..3156+

>mRNA_Ecto-sp13_S_contig16732.4823.1 ID=mRNA_Ecto-sp13_S_contig16732.4823.1|Name=mRNA_Ecto-sp13_S_contig16732.4823.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16732:2..3156+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGCAGCCCCCGTCTCGGACGCCGACGAGCAGCACTTCCAGACACTGAG
CCCCCTCCGCAAGCTGGTCGTGGTCTGCCACCGGTTGAAGGCTAGCCCGA
CCTTCAAGCGTATCGCCAGCCCGCCGGTGATGGGGTGCATCGCGGGCATG
TTTGCGGGTCTGCTGCCTGTTGGAAGGAAGCTGCTTCTCGGCCGGTCTGC
TCCTCTCTCGCCGCTCTTCGACGCGCTGAAGGGCTTGGGAAACGCGTACC
TCCCCGCGGCAATCTTGGTTCTCGCGGGCTCCCTCGCTAGGCCTGCCTCG
AAGCCCCATCCTGTTGCAGCGGCGGCGGCGGGAGAAGCGTCGACGTCAGC
GGCTGCGGTGACATACCAGCCAGAAACTAAGGCTGCCTTTTACAAGAAGG
TA
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