mRNA_Ecto-sp13_S_contig1673.4821.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1673.4821.1
Unique NamemRNA_Ecto-sp13_S_contig1673.4821.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1673.4821.1 vs. uniprot
Match: A0A6H5JU08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU08_9PHAE)

HSP 1 Score: 780 bits (2013), Expect = 8.370e-281
Identity = 439/494 (88.87%), Postives = 449/494 (90.89%), Query Frame = 1 
Query:  100 MTADTVVGRRVSYGGGESGLLEAGSSGGYQHHLEVQPAATARKSKKNGGSKRAKXXXXXXXXXXXXXXXXNKVRANKGGGRKLLQASTDSALLPACASLFVPTGAGDELTGTYDFHGHYSDRRPVYAAANGNKFFAKDEEGVPTTWYVTQASPDSTFFLSLESAVFEPADLEDLQPWVRHNDPTCKSCISKLRMSCSALTVDXXXXXXXXXXXXXXXXXXXXXAENENSTMSTAETXXXXXXXXXXXXLS-DTTMADTSAVGGCANLKINNGEERAGVYSLSGVDGEGGVVFRNGRPSYAAVGANRTDVVFSTTMNVCASGYGVVDAEWADHVGYLPPTSTVNAVFLMYVAENVGVDTADDAAATIATAAASSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWIDVGCADAGEVEEASATAAGKGYGGEEEQGTASPSSNSTALVPVGSEPNARWLSTMFAL 1578
            MTADTVVGRRV+YGGGESGLL AGSSGGY+HHLEVQPAATA +SKKNGGSKRAK  XXXXXXXXXXXXXX KVRANKGGGR+L QASTD ALLPACASLFVPTGAGDELTGTYDF GHYSDRRPVYAAANGNKFFAKDEEGVPTTWYVTQASP+STFFLSLESAVFEPADLEDLQPWVR+NDPTC+SCISKL MSCSALT D            XXXXXXXXXAENEN TMSTAET        XXXXL  DTTMADTSAVGGCANLKINNGE+RAGVYSLS VDGEGGVVFRNGRPSYAAVGANRTDVVFST MNVCASGYGVVDA+WA+HVGYLPPTSTVNAVFLMYVAENVGVDTADDAAA IATAAASSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWIDVGCA AGEVEEASA A   GYGGEEEQGTAS  SNSTALVPVG EPNARWLSTM AL
Sbjct:    1 MTADTVVGRRVNYGGGESGLLGAGSSGGYRHHLEVQPAATANQSKKNGGSKRAKKSXXXXXXXXXXXXXXXKVRANKGGGRRLQQASTDGALLPACASLFVPTGAGDELTGTYDFQGHYSDRRPVYAAANGNKFFAKDEEGVPTTWYVTQASPNSTFFLSLESAVFEPADLEDLQPWVRNNDPTCRSCISKLSMSCSALTADAIPTAPETTTPAXXXXXXXXXAENENLTMSTAETVVPPATTPXXXXLPPDTTMADTSAVGGCANLKINNGEDRAGVYSLSDVDGEGGVVFRNGRPSYAAVGANRTDVVFSTMMNVCASGYGVVDADWANHVGYLPPTSTVNAVFLMYVAENVGVDTADDAAAAIATAAASSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWIDVGCAAAGEVEEASAAAVATGYGGEEEQGTASLWSNSTALVPVGWEPNARWLSTMLAL 494
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BLAST of mRNA_Ecto-sp13_S_contig1673.4821.1 vs. uniprot
Match: D7G0N9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N9_ECTSI)

HSP 1 Score: 736 bits (1900), Expect = 1.130e-263
Identity = 413/498 (82.93%), Postives = 424/498 (85.14%), Query Frame = 1 
Query:  100 MTADTVVGRRVSYGGGESGLLEAGSSGGYQHHLEVQPAATARKSKKNGGSKRAKXXXXXXXXXXXXXXXXNKVRANKGGGRKLLQASTDSALLPACASLFVPTGAGDELTGTYDFHGHYSDRRPVYAAANGNKFFAKDEEGVPTTWYVTQASPDSTFFLSLESAVFEPADLED----LQPWVRHNDPTCKSCISKLRMSCSALTVDXXXXXXXXXXXXXXXXXXXXXAENENSTMSTAETXXXXXXXXXXXXL-SDTTMADTSAVGGCANLKINNGEERAGVYSLSGVDGEGGVVFRNGRPSYAAVGANRTDVVFSTTMNVCASGYGVVDAEWADHVGYLPPTSTVNAVFLMYVAENVGVDTADDAAATIATAAASSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWIDVGCADAGEVEEASATAAGKGYGGEEEQGTASPSSNSTALVPVGSEPNARWLSTMFAL 1578
            MTADTVVGRR SY GGESGLLEAGSSGGYQH LEV PA+ ARK KKNGGSKRAK XXXXXXXXXXXXXXX KV ANKGGGR+LLQAS D ALLPAC+SLFVPTGAGDELTGTYDF GHYSDRRPVYAAANGNKFFAKDEEGVPTTWY+TQASP+S FFLSLESAVFEPADL+D    LQPWVR+NDPTC SCISKL MSCSA T D                 X   AENENSTMSTAET            L +DTTM DTSAVGGCANLKINNGE+RAGVYSLSGVDGEGGVVFRNGRPSYAAVGA+RTDVVFSTTMNVCASGYGVVDA+WA  V YLPPTSTVN VFLMYVAENVGVDTADDAAA       SSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWID GCADAGEVEEA A  A   YGGEEEQGTAS SSNSTALVPVGSEPNARWLSTMFAL
Sbjct:    1 MTADTVVGRRASYRGGESGLLEAGSSGGYQH-LEVHPASAARKGKKNGGSKRAKKXXXXXXXXXXXXXXXXKVEANKGGGRRLLQASADGALLPACSSLFVPTGAGDELTGTYDFQGHYSDRRPVYAAANGNKFFAKDEEGVPTTWYITQASPNSKFFLSLESAVFEPADLKDPEDMLQPWVRNNDPTCGSCISKLHMSCSAWTADVIAAAPVTTTPAPNDPVXSSPAENENSTMSTAETVVPPATTPAPTDLPTDTTMVDTSAVGGCANLKINNGEDRAGVYSLSGVDGEGGVVFRNGRPSYAAVGADRTDVVFSTTMNVCASGYGVVDADWAVGVEYLPPTSTVNTVFLMYVAENVGVDTADDAAA-------SSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWIDFGCADAGEVEEALAATADTRYGGEEEQGTASLSSNSTALVPVGSEPNARWLSTMFAL 490
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1673.4821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU08_9PHAE8.370e-28188.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0N9_ECTSI1.130e-26382.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1673contigEcto-sp13_S_contig1673:6704..8284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1581
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_001700.1
Cds size1581
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462877.6580043-CDS-Ecto-sp13_S_contig1673:6703..82841681462877.6580043-CDS-Ecto-sp13_S_contig1673:6703..8284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1673 6704..8284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1673.4821.1prot_Ecto-sp13_S_contig1673.4821.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1673 6704..8284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1673.4821.1

>prot_Ecto-sp13_S_contig1673.4821.1 ID=prot_Ecto-sp13_S_contig1673.4821.1|Name=mRNA_Ecto-sp13_S_contig1673.4821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=527bp
MSNTAAVSLAALSVVLGLTTTPCSGGTSLRGSAMTADTVVGRRVSYGGGE
SGLLEAGSSGGYQHHLEVQPAATARKSKKNGGSKRAKKSKESKKAGRAKK
SKKNKVRANKGGGRKLLQASTDSALLPACASLFVPTGAGDELTGTYDFHG
HYSDRRPVYAAANGNKFFAKDEEGVPTTWYVTQASPDSTFFLSLESAVFE
PADLEDLQPWVRHNDPTCKSCISKLRMSCSALTVDAITAAPVTTTPAPND
PVPSSPAENENSTMSTAETVVPPATTPAPTDLSDTTMADTSAVGGCANLK
INNGEERAGVYSLSGVDGEGGVVFRNGRPSYAAVGANRTDVVFSTTMNVC
ASGYGVVDAEWADHVGYLPPTSTVNAVFLMYVAENVGVDTADDAAATIAT
AAASSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAK
FTPATSTTRPTLEENFWIDVGCADAGEVEEASATAAGKGYGGEEEQGTAS
PSSNSTALVPVGSEPNARWLSTMFAL*
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mRNA from alignment at Ecto-sp13_S_contig1673:6704..8284-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1673.4821.1 ID=mRNA_Ecto-sp13_S_contig1673.4821.1|Name=mRNA_Ecto-sp13_S_contig1673.4821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1581bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1673:6704..8284- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAACACAGCAGCAGTATCCTTGGCGGCGCTGTCGGTCGTCCTAGG
CTTGACCACTACGCCTTGCTCAGGTGGAACCTCCCTGCGCGGATCGGCCA
TGACCGCAGACACCGTGGTGGGAAGGAGGGTGAGCTACGGTGGCGGCGAG
AGTGGCCTTCTTGAGGCCGGAAGCAGCGGTGGGTATCAACATCATCTGGA
GGTGCAACCAGCGGCGACGGCCAGGAAGAGCAAGAAGAACGGTGGCTCCA
AGAGGGCTAAGAAGAGCAAGGAGAGCAAGAAGGCCGGGCGCGCTAAGAAG
TCTAAGAAGAACAAGGTCAGGGCTAACAAGGGAGGCGGTCGCAAGCTGCT
ACAAGCGTCCACCGACAGCGCCCTGCTGCCGGCGTGCGCTAGCTTGTTCG
TTCCTACGGGGGCCGGGGACGAACTGACCGGCACGTACGACTTCCATGGC
CACTACAGCGACCGGAGGCCGGTCTACGCCGCCGCAAACGGCAACAAGTT
CTTCGCGAAAGACGAGGAGGGGGTGCCTACCACGTGGTACGTCACCCAGG
CGTCGCCCGATTCCACGTTCTTCCTGTCCCTCGAATCGGCCGTTTTCGAG
CCGGCCGACCTGGAGGACCTGCAGCCTTGGGTCAGGCATAACGACCCCAC
CTGCAAGTCGTGCATCTCGAAGCTCCGCATGTCGTGCTCCGCGTTGACCG
TCGACGCCATCACCGCGGCGCCGGTGACCACCACCCCAGCCCCCAATGAC
CCAGTCCCCTCTTCGCCTGCGGAGAACGAGAACTCGACGATGTCCACCGC
GGAGACCGTCGTCCCCCCGGCAACAACGCCGGCACCTACCGATCTCTCGG
ACACGACGATGGCCGACACGTCCGCGGTCGGCGGCTGCGCGAACCTCAAG
ATCAACAACGGCGAGGAGCGGGCGGGCGTCTACTCCCTCAGCGGCGTCGA
CGGCGAGGGCGGGGTCGTCTTCCGGAACGGCCGACCGAGCTACGCCGCCG
TCGGCGCCAACCGGACGGACGTCGTCTTCTCCACCACCATGAACGTCTGC
GCGTCCGGGTACGGCGTGGTGGACGCCGAGTGGGCCGACCACGTGGGATA
CCTGCCCCCGACCTCCACCGTCAACGCCGTCTTCCTCATGTACGTGGCCG
AGAACGTCGGCGTGGACACCGCCGACGACGCCGCCGCCACCATCGCCACC
GCCGCCGCCTCCTCCGACAACGACGGCTGCGAGGTGCCCGTCTGGCTCCT
GGTCGCGGACGGTGCCGAGAGCCTCGACGCCGCGGGGGAGAACACGTTCC
TGTCGGTGTCCGGGGTCGACGACCCTTCCGAGGCGACCTCGTGGGCCAAG
TTCACGCCCGCGACGAGCACCACGCGCCCAACCCTGGAGGAGAACTTCTG
GATCGACGTCGGCTGCGCGGACGCCGGCGAGGTGGAGGAGGCGTCGGCGA
CAGCAGCGGGCAAGGGATACGGTGGGGAGGAAGAGCAGGGTACTGCTAGC
CCGTCGAGCAACTCTACCGCGCTGGTGCCGGTAGGGTCGGAGCCCAACGC
CCGCTGGCTGTCGACCATGTTCGCTTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1673:6704..8284-

>mRNA_Ecto-sp13_S_contig1673.4821.1 ID=mRNA_Ecto-sp13_S_contig1673.4821.1|Name=mRNA_Ecto-sp13_S_contig1673.4821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1581bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1673:6704..8284- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAACACAGCAGCAGTATCCTTGGCGGCGCTGTCGGTCGTCCTAGG
CTTGACCACTACGCCTTGCTCAGGTGGAACCTCCCTGCGCGGATCGGCCA
TGACCGCAGACACCGTGGTGGGAAGGAGGGTGAGCTACGGTGGCGGCGAG
AGTGGCCTTCTTGAGGCCGGAAGCAGCGGTGGGTATCAACATCATCTGGA
GGTGCAACCAGCGGCGACGGCCAGGAAGAGCAAGAAGAACGGTGGCTCCA
AGAGGGCTAAGAAGAGCAAGGAGAGCAAGAAGGCCGGGCGCGCTAAGAAG
TCTAAGAAGAACAAGGTCAGGGCTAACAAGGGAGGCGGTCGCAAGCTGCT
ACAAGCGTCCACCGACAGCGCCCTGCTGCCGGCGTGCGCTAGCTTGTTCG
TTCCTACGGGGGCCGGGGACGAACTGACCGGCACGTACGACTTCCATGGC
CACTACAGCGACCGGAGGCCGGTCTACGCCGCCGCAAACGGCAACAAGTT
CTTCGCGAAAGACGAGGAGGGGGTGCCTACCACGTGGTACGTCACCCAGG
CGTCGCCCGATTCCACGTTCTTCCTGTCCCTCGAATCGGCCGTTTTCGAG
CCGGCCGACCTGGAGGACCTGCAGCCTTGGGTCAGGCATAACGACCCCAC
CTGCAAGTCGTGCATCTCGAAGCTCCGCATGTCGTGCTCCGCGTTGACCG
TCGACGCCATCACCGCGGCGCCGGTGACCACCACCCCAGCCCCCAATGAC
CCAGTCCCCTCTTCGCCTGCGGAGAACGAGAACTCGACGATGTCCACCGC
GGAGACCGTCGTCCCCCCGGCAACAACGCCGGCACCTACCGATCTCTCGG
ACACGACGATGGCCGACACGTCCGCGGTCGGCGGCTGCGCGAACCTCAAG
ATCAACAACGGCGAGGAGCGGGCGGGCGTCTACTCCCTCAGCGGCGTCGA
CGGCGAGGGCGGGGTCGTCTTCCGGAACGGCCGACCGAGCTACGCCGCCG
TCGGCGCCAACCGGACGGACGTCGTCTTCTCCACCACCATGAACGTCTGC
GCGTCCGGGTACGGCGTGGTGGACGCCGAGTGGGCCGACCACGTGGGATA
CCTGCCCCCGACCTCCACCGTCAACGCCGTCTTCCTCATGTACGTGGCCG
AGAACGTCGGCGTGGACACCGCCGACGACGCCGCCGCCACCATCGCCACC
GCCGCCGCCTCCTCCGACAACGACGGCTGCGAGGTGCCCGTCTGGCTCCT
GGTCGCGGACGGTGCCGAGAGCCTCGACGCCGCGGGGGAGAACACGTTCC
TGTCGGTGTCCGGGGTCGACGACCCTTCCGAGGCGACCTCGTGGGCCAAG
TTCACGCCCGCGACGAGCACCACGCGCCCAACCCTGGAGGAGAACTTCTG
GATCGACGTCGGCTGCGCGGACGCCGGCGAGGTGGAGGAGGCGTCGGCGA
CAGCAGCGGGCAAGGGATACGGTGGGGAGGAAGAGCAGGGTACTGCTAGC
CCGTCGAGCAACTCTACCGCGCTGGTGCCGGTAGGGTCGGAGCCCAACGC
CCGCTGGCTGTCGACCATGTTCGCTTTGTGA
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