mRNA_Ecto-sp13_S_contig16724.4817.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16724.4817.1
Unique NamemRNA_Ecto-sp13_S_contig16724.4817.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16724.4817.1 vs. uniprot
Match: D7FV49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV49_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 2.770e-58
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:    1 PLRDRLASILSSLIRFHLRIRLDAPPERLTRAPEALPSCGDPSYAEAKRRAEVLPPSHFSKVHTVVDVSETDATLGASFSKALFRLKGFSCEMAVEVLSAAEAFAAVD 324
            PLRDRLAS+LSSLIRFHLRIRLDAPPERLTRAPEALPSCGDPSYAEAKRRAEVLPPSHFSKVHTVVDVSETDATLGASFSKALFRL+GFSCEMAVEVLSAAEAFAA D
Sbjct: 1624 PLRDRLASMLSSLIRFHLRIRLDAPPERLTRAPEALPSCGDPSYAEAKRRAEVLPPSHFSKVHTVVDVSETDATLGASFSKALFRLEGFSCEMAVEVLSAAEAFAAAD 1731
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16724.4817.1 vs. uniprot
Match: A0A6H5JD11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD11_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 7.720e-30
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 PLRDRLASILSSLIRFHLRIRLDAPPERLTRAPEALPSCGDPSYAEAKRRAEVLPPSHFSK 183
            PLRDRLAS+LSSLIRFHLRIRLDAPPERLTRAPEALPSCGDPSYAEAKRRAEVLPPSHFSK
Sbjct: 2196 PLRDRLASMLSSLIRFHLRIRLDAPPERLTRAPEALPSCGDPSYAEAKRRAEVLPPSHFSK 2256
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16724.4817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV49_ECTSI2.770e-5897.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD11_9PHAE7.720e-3098.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16724contigEcto-sp13_S_contig16724:1035..2722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size324
Hectar predicted targeting categorymitochondrion
Exons3
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462877.3664398-CDS-Ecto-sp13_S_contig16724:1034..11031681462877.3664398-CDS-Ecto-sp13_S_contig16724:1034..1103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16724 1035..1103 -
1681462877.377564-CDS-Ecto-sp13_S_contig16724:1773..18451681462877.377564-CDS-Ecto-sp13_S_contig16724:1773..1845Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16724 1774..1845 -
1681462877.3926113-CDS-Ecto-sp13_S_contig16724:2539..27221681462877.3926113-CDS-Ecto-sp13_S_contig16724:2539..2722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16724 2540..2722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16724.4817.1prot_Ecto-sp13_S_contig16724.4817.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16724 1035..2722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16724.4817.1

>prot_Ecto-sp13_S_contig16724.4817.1 ID=prot_Ecto-sp13_S_contig16724.4817.1|Name=mRNA_Ecto-sp13_S_contig16724.4817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
PLRDRLASILSSLIRFHLRIRLDAPPERLTRAPEALPSCGDPSYAEAKRR
AEVLPPSHFSKVHTVVDVSETDATLGASFSKALFRLKGFSCEMAVEVLSA
AEAFAAVD
back to top

mRNA from alignment at Ecto-sp13_S_contig16724:1035..2722-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16724.4817.1 ID=mRNA_Ecto-sp13_S_contig16724.4817.1|Name=mRNA_Ecto-sp13_S_contig16724.4817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1688bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16724:1035..2722- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCTGAGAGATCGGCTGGCGAGCATACTGTCCTCCCTGATCCGGTTCCA
CCTCAGGATTCGCCTCGACGCTCCGCCGGAGAGGCTTACCAGGGCCCCCG
AGGCCCTCCCATCCTGCGGGGACCCGTCTTACGCTGAGGCAAAGAGGAGG
GCTGAGGTTCTGCCTCCCAGTCACTTCAGCAAGGTGTGTAAACGATGGAG
ATGGAGTGCCGGAGGGGGGGGGGGGGGGGGGGGCATGTCTTCGGTGTTAA
GACCATCTGACCACGCGTTCTCCAGAGGACGGAGCGCGCGCAAGGGGGGT
GCTAGGGTGGGACGGGTCGTGAAGTTTTGACGGAGGCCAGTCAGGGGGGT
GAAAAAGAAAGACTACTGCATGCTGCTGTTTATTTGTGATGCGTTCTTTT
GCGGGGTTATGGCAGCGGTCTAACAATTCCCAAGTATCGGGGAGATCCTG
GGATGTTTGTGCCAAGAGATTTGTCCTGGGAGACTTCTAGGGAGTCGTCA
GAGATTTTTTTCCGGAAGGACTACAGTCTGTTACGGGAGGGAAGGCTCTT
GGGGGAGAGGGGGGGGGTGGGGGAGATTAGACGCTGCTCATCAGGCGAAA
GACCCATTTCCCATTACTTTCAAGGCAAAAGTTAAAAAAAAAAATGCCGT
CCGTACTCCTGGCCTTTCCGCTTGAAAACCTTTAGTGACGTTGTCGGCCC
GGTGGTTGCCTGCATTGCTTGTGTAGCGTGCTGAAGAAATTCCCCGTGCG
CCCCTCGGTCATGTTTGACGGGCTATCTCCACCGCACCTACCATACCCTC
CTGGCATGCCTTGTCGTGTGTGCGATACATACGGCATGATTCTGTCGGCT
ATTCCCTCGTGCGAAACCGGTGCACAGGTTCACACGGTGGTGGATGTCTC
CGAGACGGACGCAACGCTCGGTGCTTCCTTCTCGAAGGCGTTATTCAGGG
TACGTTCGAAATCATCATAGCGTACTTTGTATGATTTAAGCACCGTCCAT
ACCCACCCTGCTGCTGCTGTTGCTGTTAGCAGTGGTGGTTTTAGGTTGTG
GTGTGTTGCTTTTTTGGAACCAACGTATTGCACGGAGTTCTTGTACTGCA
AAGGATCACGTGCATCTTACCTTATCTCTTGGCCTTGAACGGAACACGAC
ACCCCCGAACCACAGACATACATCGTATCAAGGAACTAATTTTTCATGCT
CCGAGGTGGTACTCCAGGGCAAAGGCAAGAAGATCGGGCGCACCCAATTC
CTTTTCCGGCCGGCACAGCGAGCGTACATTGGTGTCTGTCCACGGTCACA
TGAAAAAATATCCCTGCAGAGTACCGGCTCCGCACGCACTCAGGGCGAGA
TTGGCTACTGTGCCTCATTTTTTCAGCGAACAGATTAAGAAATAGGCGGT
TCTGACAACATCTCCTTTGAGGACGCCTTCGAAGGAAGAACGCAATCAGC
GTGTATCCTCGCCATCGCGCCAAGCTCGTTTCCCCTATGAATAATAATCG
ACCCCGCCTGCCTCCGAATTTTCGATTTTTCTGTTATCTACTCGACGTCG
TGAAGTTGCCATTGTGCCCTTGCCGCTGGCGTTGCTCCTGTTTGACCCAT
ATGATATGCATACGACCAGCTGAAGGGGTTCTCCTGCGAGATGGCCGTCG
AGGTTCTCTCCGCTGCGGAGGCGTTCGCTGCCGTGGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16724:1035..2722-

>mRNA_Ecto-sp13_S_contig16724.4817.1 ID=mRNA_Ecto-sp13_S_contig16724.4817.1|Name=mRNA_Ecto-sp13_S_contig16724.4817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16724:1035..2722- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCTGAGAGATCGGCTGGCGAGCATACTGTCCTCCCTGATCCGGTTCCA
CCTCAGGATTCGCCTCGACGCTCCGCCGGAGAGGCTTACCAGGGCCCCCG
AGGCCCTCCCATCCTGCGGGGACCCGTCTTACGCTGAGGCAAAGAGGAGG
GCTGAGGTTCTGCCTCCCAGTCACTTCAGCAAGGTTCACACGGTGGTGGA
TGTCTCCGAGACGGACGCAACGCTCGGTGCTTCCTTCTCGAAGGCGTTAT
TCAGGCTGAAGGGGTTCTCCTGCGAGATGGCCGTCGAGGTTCTCTCCGCT
GCGGAGGCGTTCGCTGCCGTGGAC
back to top