prot_Ecto-sp13_S_contig16723.4816.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16723.4816.1
Unique Nameprot_Ecto-sp13_S_contig16723.4816.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length598
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16723.4816.1 vs. uniprot
Match: A0A6H5JU77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU77_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 3.830e-48
Identity = 235/502 (46.81%), Postives = 239/502 (47.61%), Query Frame = 0 
Query:   99 RTATSSPPQLRPVAEPPRGSPESXXXXXXXXXXXPPAFGSPSHYADISDSAMSNRIATRLAIAHNNAAARRRHARLLDARSMRRSTTALLRPGVGVESHPPALLPAVATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASYGWTHRVGQARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESTLHPTARSXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGGATAANGDGDIANSGGTSSAAVAGGAGAGVRAGTARVDVAMASPPGPTRRGDGGGTTAIDGGDAGRAAVGQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS---AGGVSAISARVHQLHKASVVGDLAAISRFIKDGGNLEAQSFCG 597
            RTATSSPPQ RPVA+ PRGSPES     XXXXXXP AFGSPSH AD SDSAMS RIATRLAIAHNNAAARRRHARLLDARSMRRS TA LRPGVGVESHPPALLPAVA AT                            AA YGWT +VG+ARA      XXXX  XXXXXXXXXXX           E                                                                                                                                                              FGG TAANGDGDIAN    SSAAV GGA A VRAGTAR  VA+ASPPGPT                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   S   A GVSAISARVHQLHKASVVGDLAAISRFIKDGGNLEAQSFCG
Sbjct:   72 RTATSSPPQPRPVADLPRGSPESSPAPPXXXXXXP-AFGSPSHRADSSDSAMSTRIATRLAIAHNNAAARRRHARLLDARSMRRSITASLRPGVGVESHPPALLPAVAIATADNDAAGSCSSSSSALT-----------AARYGWTRQVGEARAAAAGVGXXXXTGXXXXXXXXXXXTDTVAVGAVATEGA-------------------------------------------------------------------------------------------------------------------------------------------------------EDDSDFGGTTAANGDGDIANXXXXSSAAVPGGAEAWVRAGTARAAVAVASPPGPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTNSSRSAAGVSAISARVHQLHKASVVGDLAAISRFIKDGGNLEAQSFCG 410
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BLAST of mRNA_Ecto-sp13_S_contig16723.4816.1 vs. uniprot
Match: D8LT48_ECTSI (UPF0020 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT48_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 8.270e-7
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 
Query:  568 LHKASVVGDLAAISRFIKDGGNLEAQSFCG 597
            LHKASVVGDLAAISRFIKDGGNLEAQSFCG
Sbjct:  534 LHKASVVGDLAAISRFIKDGGNLEAQSFCG 563
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16723.4816.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU77_9PHAE3.830e-4846.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT48_ECTSI8.270e-7100.00UPF0020 domain-containing protein (Fragment) n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16723contigEcto-sp13_S_contig16723:717..2510 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16723.4816.1mRNA_Ecto-sp13_S_contig16723.4816.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16723 717..2510 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16723.4816.1 ID=prot_Ecto-sp13_S_contig16723.4816.1|Name=mRNA_Ecto-sp13_S_contig16723.4816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=598bp
REIRKLESGRAGRGGPTKTELESHPSIMPVMRRDSSRASSSACQPDEEEE
EEEPSAVGEGGGGGTIETEEPRTPVQSGGGDHELDVASATASAAAEVDRT
ATSSPPQLRPVAEPPRGSPESPPAPPPAAAAAPPAFGSPSHYADISDSAM
SNRIATRLAIAHNNAAARRRHARLLDARSMRRSTTALLRPGVGVESHPPA
LLPAVATATADNDAAAAAAATAAATAGSGGSSSSALAAASYGWTHRVGQA
RAAAAAAGVGGGGMMTGSITDDDDDDDDDDDTGSDTESTLHPTARSGAAE
HNTTTTTGVPTAASPVEDAPIDAAAAAAAVAVRRPGGAHRRRVPTSATVS
SPDEYAPTAGGVARRSSGGTLRTRGSPVTSTTSLVVEDPPTEVAAIPRSG
GALRRRRIYSNSSNSSSRTRTTAAAVAVAAATTAAATEGAEDDSHFGGAT
AANGDGDIANSGGTSSAAVAGGAGAGVRAGTARVDVAMASPPGPTRRGDG
GGTTAIDGGDAGRAAVGQVAATAAATGETGVAAAAATATGGTNNNSAGNN
SSRSAGGVSAISARVHQLHKASVVGDLAAISRFIKDGGNLEAQSFCG*
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