mRNA_Ecto-sp13_S_contig16723.4816.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig16723.4816.1
Unique Name	mRNA_Ecto-sp13_S_contig16723.4816.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig16723.4816.1 vs. uniprot
Match: A0A6H5JU77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU77_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 3.830e-48
Identity = 235/502 (46.81%), Postives = 239/502 (47.61%), Query Frame = 1

Query:  295 RTATSSPPQLRPVAEPPRGSPESXXXXXXXXXXXPPAFGSPSHYADISDSAMSNRIATRLAIAHNNAAARRRHARLLDARSMRRSTTALLRPGVGVESHPPALLPAVATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASYGWTHRVGQARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESTLHPTARSXXXXXXXXXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGGATAANGDGDIANSGGTSSAAVAGGAGAGVRAGTARVDVAMASPPGPTRRGDGGGTTAIDGGDAGRAAVGQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS---AGGVSAISARVHQLHKASVVGDLAAISRFIKDGGNLEAQSFCG 1791
            RTATSSPPQ RPVA+ PRGSPES     XXXXXXP AFGSPSH AD SDSAMS RIATRLAIAHNNAAARRRHARLLDARSMRRS TA LRPGVGVESHPPALLPAVA AT                            AA YGWT +VG+ARA      XXXX  XXXXXXXXXXX           E                                                                                                                                                              FGG TAANGDGDIAN    SSAAV GGA A VRAGTAR  VA+ASPPGPT                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   S   A GVSAISARVHQLHKASVVGDLAAISRFIKDGGNLEAQSFCG
Sbjct:   72 RTATSSPPQPRPVADLPRGSPESSPAPPXXXXXXP-AFGSPSHRADSSDSAMSTRIATRLAIAHNNAAARRRHARLLDARSMRRSITASLRPGVGVESHPPALLPAVAIATADNDAAGSCSSSSSALT-----------AARYGWTRQVGEARAAAAGVGXXXXTGXXXXXXXXXXXTDTVAVGAVATEGA-------------------------------------------------------------------------------------------------------------------------------------------------------EDDSDFGGTTAANGDGDIANXXXXSSAAVPGGAEAWVRAGTARAAVAVASPPGPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTNSSRSAAGVSAISARVHQLHKASVVGDLAAISRFIKDGGNLEAQSFCG 410

[Close]

BLAST of mRNA_Ecto-sp13_S_contig16723.4816.1 vs. uniprot
Match: D8LT48_ECTSI (UPF0020 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT48_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 8.270e-7
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1

Query: 1702 LHKASVVGDLAAISRFIKDGGNLEAQSFCG 1791
            LHKASVVGDLAAISRFIKDGGNLEAQSFCG
Sbjct:  534 LHKASVVGDLAAISRFIKDGGNLEAQSFCG 563

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig16723.4816.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig16723.4816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JU77_9PHAE	3.830e-48	46.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LT48_ECTSI	8.270e-7	100.00	UPF0020 domain-containing protein (Fragment) n=1 T...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig16723	contig	Ecto-sp13_S_contig16723:717..2510 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	0
Seed ortholog score	63.5
Seed ortholog evalue	3.7e-07
Seed eggNOG ortholog	2880.D8LT48
Preferred name	TRMT11
Model size	1794
KEGG ko	ko:K02995,ko:K15430
KEGG Pathway	ko03010,map03010
KEGG Module	M00177,M00179
Hectar predicted targeting category	other localisation
GOs	GO:0001510,GO:0002940,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004809,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016423,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0043170,GO:0043412,GO:0043414,GO:0043527,GO:0043528,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1902494,GO:1990234
Exons	1
EggNOG free text desc.	tRNA (guanine-N2-)-methyltransferase activity
EggNOG OGs	COG1041@1,KOG2671@2759
Ec32 ortholog description	Ankyrin repeat-containing domain
Ec32 ortholog	Ec-08_004210.2
EC	2.1.1.214
Cds size	1794
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	br01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03016

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462877.3256404-CDS-Ecto-sp13_S_contig16723:716..2510	1681462877.3256404-CDS-Ecto-sp13_S_contig16723:716..2510	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16723 717..2510 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig16723.4816.1	prot_Ecto-sp13_S_contig16723.4816.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig16723 717..2510 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig16723:717..2510+
coding sequence from alignment at Ecto-sp13_S_contig16723:717..2510+

protein sequence of mRNA_Ecto-sp13_S_contig16723.4816.1

>prot_Ecto-sp13_S_contig16723.4816.1 ID=prot_Ecto-sp13_S_contig16723.4816.1|Name=mRNA_Ecto-sp13_S_contig16723.4816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=598bp
REIRKLESGRAGRGGPTKTELESHPSIMPVMRRDSSRASSSACQPDEEEE
EEEPSAVGEGGGGGTIETEEPRTPVQSGGGDHELDVASATASAAAEVDRT
ATSSPPQLRPVAEPPRGSPESPPAPPPAAAAAPPAFGSPSHYADISDSAM
SNRIATRLAIAHNNAAARRRHARLLDARSMRRSTTALLRPGVGVESHPPA
LLPAVATATADNDAAAAAAATAAATAGSGGSSSSALAAASYGWTHRVGQA
RAAAAAAGVGGGGMMTGSITDDDDDDDDDDDTGSDTESTLHPTARSGAAE
HNTTTTTGVPTAASPVEDAPIDAAAAAAAVAVRRPGGAHRRRVPTSATVS
SPDEYAPTAGGVARRSSGGTLRTRGSPVTSTTSLVVEDPPTEVAAIPRSG
GALRRRRIYSNSSNSSSRTRTTAAAVAVAAATTAAATEGAEDDSHFGGAT
AANGDGDIANSGGTSSAAVAGGAGAGVRAGTARVDVAMASPPGPTRRGDG
GGTTAIDGGDAGRAAVGQVAATAAATGETGVAAAAATATGGTNNNSAGNN
SSRSAGGVSAISARVHQLHKASVVGDLAAISRFIKDGGNLEAQSFCG*

mRNA from alignment at Ecto-sp13_S_contig16723:717..2510+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig16723.4816.1 ID=mRNA_Ecto-sp13_S_contig16723.4816.1|Name=mRNA_Ecto-sp13_S_contig16723.4816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1794bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16723:717..2510+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGAGATCCGAAAGTTGGAGAGCGGGAGAGCAGGGCGGGGCGGGCCTAC
GAAAACGGAACTCGAGAGTCACCCATCCATCATGCCCGTAATGCGGCGGG
ACTCCTCCCGTGCTTCTTCTTCTGCTTGCCAGCCGGACGAGGAGGAGGAG
GAGGAGGAGCCCTCGGCAGTAGGCGAGGGCGGCGGCGGCGGCACCATCGA
AACGGAAGAACCCAGAACCCCCGTTCAAAGCGGCGGCGGCGATCACGAAC
TAGATGTTGCAAGTGCCACTGCTTCCGCTGCCGCCGAAGTAGACCGCACT
GCCACCAGCAGTCCCCCGCAGCTGCGGCCCGTCGCCGAGCCCCCTCGGGG
CTCGCCCGAGTCTCCTCCTGCTCCTCCTCCTGCTGCTGCTGCTGCTCCCC
CCGCGTTCGGTTCTCCCAGCCACTATGCCGACATCAGCGACTCCGCCATG
AGCAACAGGATCGCCACGCGCCTGGCCATCGCCCACAACAACGCCGCCGC
CCGCAGGCGTCACGCGAGGCTGCTCGACGCCAGGTCCATGAGGAGGAGCA
CTACAGCCTTGCTGCGGCCAGGGGTGGGCGTGGAATCTCACCCGCCCGCT
CTTCTTCCGGCAGTGGCCACCGCCACCGCCGACAACGATGCTGCCGCCGC
CGCCGCCGCCACCGCCGCCGCCACCGCCGGATCCGGCGGCAGTAGTAGTA
GTGCCTTGGCCGCCGCGAGCTATGGTTGGACCCATCGGGTAGGCCAAGCG
AGGGCGGCTGCGGCGGCGGCGGGTGTCGGAGGCGGCGGCATGATGACGGG
AAGCATTACCGACGACGACGACGACGACGACGATGACGACGACACCGGCA
GTGACACAGAGTCTACCCTACACCCGACAGCAAGAAGTGGTGCGGCAGAA
CACAACACCACCACTACCACCGGTGTTCCGACTGCTGCTAGCCCCGTGGA
AGATGCTCCGATCGATGCTGCTGCTGCTGCTGCTGCTGTTGCTGTCCGCC
GGCCCGGTGGTGCCCACAGGAGGAGAGTCCCCACCAGCGCTACCGTTAGT
AGCCCTGACGAATATGCTCCGACTGCTGGTGGTGTCGCCCGTCGTTCTTC
TGGTGGTACCCTCAGGACGCGAGGCTCTCCTGTCACTTCTACTACTAGCC
TAGTCGTCGAAGATCCTCCGACTGAGGTTGCCGCTATCCCTCGGTCTGGT
GGTGCCCTCCGGAGGCGACGCATTTACAGCAACAGCAGCAACAGCAGCAG
CCGCACGCGCACCACAGCGGCAGCGGTTGCGGTGGCCGCTGCCACCACCG
CTGCCGCCACCGAAGGAGCAGAAGATGATTCCCATTTCGGTGGCGCGACC
GCCGCCAACGGGGATGGCGATATCGCCAACAGCGGGGGTACTTCTTCCGC
TGCTGTTGCCGGCGGGGCGGGAGCGGGGGTGAGAGCCGGCACAGCGAGGG
TGGATGTGGCGATGGCATCACCACCCGGCCCGACGAGGAGGGGCGACGGC
GGCGGCACCACGGCGATCGACGGCGGTGATGCAGGACGAGCAGCAGTCGG
TCAAGTGGCGGCGACAGCCGCCGCAACAGGAGAAACAGGAGTGGCAGCAG
CAGCAGCAACAGCAACAGGGGGTACCAACAACAACAGTGCTGGCAACAAC
AGCAGTAGATCGGCGGGGGGGGTATCGGCGATATCGGCGAGGGTTCACCA
GCTGCACAAGGCTAGCGTGGTCGGAGACCTGGCCGCAATCTCTCGGTTCA
TCAAGGACGGGGGCAACCTGGAGGCTCAGAGCTTTTGCGGGTGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16723:717..2510+

>mRNA_Ecto-sp13_S_contig16723.4816.1 ID=mRNA_Ecto-sp13_S_contig16723.4816.1|Name=mRNA_Ecto-sp13_S_contig16723.4816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1794bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16723:717..2510+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGAGATCCGAAAGTTGGAGAGCGGGAGAGCAGGGCGGGGCGGGCCTAC
GAAAACGGAACTCGAGAGTCACCCATCCATCATGCCCGTAATGCGGCGGG
ACTCCTCCCGTGCTTCTTCTTCTGCTTGCCAGCCGGACGAGGAGGAGGAG
GAGGAGGAGCCCTCGGCAGTAGGCGAGGGCGGCGGCGGCGGCACCATCGA
AACGGAAGAACCCAGAACCCCCGTTCAAAGCGGCGGCGGCGATCACGAAC
TAGATGTTGCAAGTGCCACTGCTTCCGCTGCCGCCGAAGTAGACCGCACT
GCCACCAGCAGTCCCCCGCAGCTGCGGCCCGTCGCCGAGCCCCCTCGGGG
CTCGCCCGAGTCTCCTCCTGCTCCTCCTCCTGCTGCTGCTGCTGCTCCCC
CCGCGTTCGGTTCTCCCAGCCACTATGCCGACATCAGCGACTCCGCCATG
AGCAACAGGATCGCCACGCGCCTGGCCATCGCCCACAACAACGCCGCCGC
CCGCAGGCGTCACGCGAGGCTGCTCGACGCCAGGTCCATGAGGAGGAGCA
CTACAGCCTTGCTGCGGCCAGGGGTGGGCGTGGAATCTCACCCGCCCGCT
CTTCTTCCGGCAGTGGCCACCGCCACCGCCGACAACGATGCTGCCGCCGC
CGCCGCCGCCACCGCCGCCGCCACCGCCGGATCCGGCGGCAGTAGTAGTA
GTGCCTTGGCCGCCGCGAGCTATGGTTGGACCCATCGGGTAGGCCAAGCG
AGGGCGGCTGCGGCGGCGGCGGGTGTCGGAGGCGGCGGCATGATGACGGG
AAGCATTACCGACGACGACGACGACGACGACGATGACGACGACACCGGCA
GTGACACAGAGTCTACCCTACACCCGACAGCAAGAAGTGGTGCGGCAGAA
CACAACACCACCACTACCACCGGTGTTCCGACTGCTGCTAGCCCCGTGGA
AGATGCTCCGATCGATGCTGCTGCTGCTGCTGCTGCTGTTGCTGTCCGCC
GGCCCGGTGGTGCCCACAGGAGGAGAGTCCCCACCAGCGCTACCGTTAGT
AGCCCTGACGAATATGCTCCGACTGCTGGTGGTGTCGCCCGTCGTTCTTC
TGGTGGTACCCTCAGGACGCGAGGCTCTCCTGTCACTTCTACTACTAGCC
TAGTCGTCGAAGATCCTCCGACTGAGGTTGCCGCTATCCCTCGGTCTGGT
GGTGCCCTCCGGAGGCGACGCATTTACAGCAACAGCAGCAACAGCAGCAG
CCGCACGCGCACCACAGCGGCAGCGGTTGCGGTGGCCGCTGCCACCACCG
CTGCCGCCACCGAAGGAGCAGAAGATGATTCCCATTTCGGTGGCGCGACC
GCCGCCAACGGGGATGGCGATATCGCCAACAGCGGGGGTACTTCTTCCGC
TGCTGTTGCCGGCGGGGCGGGAGCGGGGGTGAGAGCCGGCACAGCGAGGG
TGGATGTGGCGATGGCATCACCACCCGGCCCGACGAGGAGGGGCGACGGC
GGCGGCACCACGGCGATCGACGGCGGTGATGCAGGACGAGCAGCAGTCGG
TCAAGTGGCGGCGACAGCCGCCGCAACAGGAGAAACAGGAGTGGCAGCAG
CAGCAGCAACAGCAACAGGGGGTACCAACAACAACAGTGCTGGCAACAAC
AGCAGTAGATCGGCGGGGGGGGTATCGGCGATATCGGCGAGGGTTCACCA
GCTGCACAAGGCTAGCGTGGTCGGAGACCTGGCCGCAATCTCTCGGTTCA
TCAAGGACGGGGGCAACCTGGAGGCTCAGAGCTTTTGCGGGTGA