mRNA_Ecto-sp13_S_contig16716.4812.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16716.4812.1
Unique NamemRNA_Ecto-sp13_S_contig16716.4812.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16716.4812.1 vs. uniprot
Match: D8LDN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN9_ECTSI)

HSP 1 Score: 820 bits (2117), Expect = 2.030e-296
Identity = 394/471 (83.65%), Postives = 414/471 (87.90%), Query Frame = 1 
Query:    1 VTSPPDCPGESPYIPEGFKTDNTLPQWEANGAAWKECYDGYRCEAWWGGLEGSPDREPVVLDAPLDWPDCCALCNGGGDXXGDESSTNSTCVAWSFDPSTGSCQRMPAVEETSYDYSWNAWKNNNTINGYPGYFEAPLTDCWGRTQYDLCVNTNAALIIPGVIVVFFSLMCMHCLGFCAPSTRAGLLRELAIEQPQSSRLVKAACVKVRATCKKTVKRTGKGGAKIIYTYEGTFVTRDGAVFNLPPPTRLPMGPKPSRRIEKRMLRVLHNTKRNPRADPSVARRCETPDGLRAEFSNMVKAVPKKPEASTSGEAFYRSHALGHPNVPFHRDAAADQRFDCILLVGTEQPGRTTRKVLLVGILGEDRITCVDDELMGASVEDLCCPSFCFVLGAAVLFIMCITLLTNKAAQNMAAWTFEGDYRVGAVIGLVLCTCVPLSLFVWKCRKSGKLLRSIRECPLVAESDRVIVGRT 1413
            VTSPPDCPGESPYIPEGFKTDNTLP+WEA GAAWKECYDGYRCEAWWGGLEGSPD EPVVLDAPLDWPDCCALC+G G XX     T STCVAWSFDPSTGSCQRM  V E SYDYSW AW +NNTI+GYPGYFEAPLTDCWGR+QYDLCVNTNAA IIPGVIV F SL CM   GFCAPS RAGLLRELAIEQPQSSRLVK AC +V   C KTVK TGKGG KI YTY GTFVTRDGAVFNLPPPTR P   + SRRIEKRML VLHNTKRNPRADPS+ARRCETPDGLRAEFS MV+AVP+KPEAS SG +FYRSH LGHPNVP  RDAA D RFDCILLVGTE+PGRT  KVLLVGILGEDRITCV ++++GASV D CC SFCFVL AA+LFIMCITLLTN+AAQNMAAWTFEGD+RVGA+IGLVLCTCVPLSLFVWKCRKSGKLLRSIRECPLVAESDRVI  RT
Sbjct:   54 VTSPPDCPGESPYIPEGFKTDNTLPEWEALGAAWKECYDGYRCEAWWGGLEGSPDGEPVVLDAPLDWPDCCALCSGSGSXXXXXXXTTSTCVAWSFDPSTGSCQRMSTVAEPSYDYSWGAWNSNNTISGYPGYFEAPLTDCWGRSQYDLCVNTNAAFIIPGVIVAFISLCCMWASGFCAPSARAGLLRELAIEQPQSSRLVKVACAEV--ACTKTVKSTGKGGTKITYTYNGTFVTRDGAVFNLPPPTRRPKMHEASRRIEKRMLSVLHNTKRNPRADPSLARRCETPDGLRAEFSKMVRAVPRKPEASRSGGSFYRSHVLGHPNVPVERDAAVDHRFDCILLVGTEEPGRTPTKVLLVGILGEDRITCVGEDVLGASVADFCCASFCFVLAAALLFIMCITLLTNEAAQNMAAWTFEGDHRVGAIIGLVLCTCVPLSLFVWKCRKSGKLLRSIRECPLVAESDRVINSRT 522
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BLAST of mRNA_Ecto-sp13_S_contig16716.4812.1 vs. uniprot
Match: A0A6H5KRC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC3_9PHAE)

HSP 1 Score: 471 bits (1213), Expect = 8.900e-161
Identity = 249/471 (52.87%), Postives = 299/471 (63.48%), Query Frame = 1 
Query:    1 VTSPPDCPGESPYIPEGFKTDNTLPQWEANGAAWKECYDGYRCEAWWGGLEGSPDREPVVLDAPLDWPDCCALCNGGGDXXGDESSTNSTCVAWSFDPSTGSCQRMPAVEETSYDYSWNAWKNNNTINGYPGYFEAPLTDCWGRTQYDLCVNTNAALIIPGVIVVFFSLMCMHCLGFCAPSTRAGLLRELAIEQPQSSRLVKAACVKVRATCKKTVKRTGKGGAKIIYTYEGTFVTRDGAVFNLPPPTRLPMGPKPSRRIEKRMLRVLHNTKRNPRADPSVARRCETPDGLRAEFSNMVKAVPKKPEASTSGEAFYRSHALGHPNVPFHRDAAADQRFDCILLVGTEQPGRTTRKVLLVGILGEDRITCVDDELMGASVEDLCCPSFCFVLGAAVLFIMCITLLTNKAAQNMAAWTFEGDYRVGAVIGLVLCTCVPLSLFVWKCRKSGKLLRSIRECPLVAESDRVIVGRT 1413
            VTSPPDCPG+S YIPEGFKTDNTLP+WE  GAAWKE +D  RC+AWWGGL GSP+ EPVVLDAPLDWPDCCALC+GGGD  G  ++T +TC AWSFDPSTGSCQRM AVE TS + +W AW+   T+ GYPGYFEAP+ DCW R +YDLCVN +  LI+PG+ V F+S++CM+                                      C+K  +++GKGG K  YTY+GTF   DGA+F LPPPTRL   P+ S +IEKRMLRVL+NT  NPRADP VA R                       A  S +   R   + +P VP   DA                      +VLLVGILGEDRITC+D EL+G+S     C SFC VL A +L  MC+ LLTN+AAQ+MA WTFEGDYR+GAV+GL+L +CVPLS F W  R S KL R +++CP VAESDRV+  RT
Sbjct:   33 VTSPPDCPGDSLYIPEGFKTDNTLPEWEDEGAAWKE-WD--RCDAWWGGLGGSPNGEPVVLDAPLDWPDCCALCSGGGDDDG--ANTETTCAAWSFDPSTGSCQRMSAVESTSQNNTWGAWQYKGTVKGYPGYFEAPINDCWSRMKYDLCVNPSMGLIVPGMFVAFWSILCMY----------------------------------FPVGCQKLAQKSGKGGIKYFYTYKGTFAACDGALFVLPPPTRLSNAPRSSHKIEKRMLRVLYNTNLNPRADPGVASR-----------------------AGDSCDK--RKRQISNPIVP--HDA----------------------RVLLVGILGEDRITCIDHELLGSSSCCRSCASFCLVLAAVMLVTMCVALLTNEAAQHMAEWTFEGDYRIGAVVGLMLRSCVPLS-FAWNYRNSNKLFRLVKDCP-VAESDRVVHSRT 413
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BLAST of mRNA_Ecto-sp13_S_contig16716.4812.1 vs. uniprot
Match: A0A6H5K6X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X7_9PHAE)

HSP 1 Score: 303 bits (777), Expect = 3.770e-98
Identity = 153/217 (70.51%), Postives = 156/217 (71.89%), Query Frame = 1 
Query:    1 VTSPPDCPGESPYIPEGFKTDNTLPQWEANGAAWKECYDGYRCEAWWGGLEGSPDREPVVLDAPLDWPDCCALCNGGGDXXGDESSTNSTCVAWSFDPSTGSCQRMPAVEETSYDYSWNAWKNNNTINGYPGYFEAPLTDCWGRTQYDLCVNTNAALIIPGVIVVFFSLMCMHCLGFCAPSTRAGLLRELA--------IEQPQSSRLVKAACVKVR 627
            VTSPPD PGESPYIPEGFKTDNTLP  EANGAAWKECYDG RC+AWWGGLEGSPD EPVVLDAPLDWPDCCALCNGGGD  GD S TNSTCVAWSFDPSTG CQRMP VEETSYDYSW  W+N+NTING                                       LMCMHCLGFCA STRAGLLRELA        IEQPQSSRLVKAACVKVR
Sbjct:   13 VTSPPDFPGESPYIPEGFKTDNTLPLREANGAAWKECYDGNRCDAWWGGLEGSPDGEPVVLDAPLDWPDCCALCNGGGDNDGDGSGTNSTCVAWSFDPSTGWCQRMPTVEETSYDYSWTTWQNSNTING---------------------------------------LMCMHCLGFCARSTRAGLLRELAVEQQQSSPIEQPQSSRLVKAACVKVR 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16716.4812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDN9_ECTSI2.030e-29683.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRC3_9PHAE8.900e-16152.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6X7_9PHAE3.770e-9870.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16716contigEcto-sp13_S_contig16716:646..3231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1540
Hectar predicted targeting categoryother localisation
Exons4
Cds size1101
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16716.4812.1prot_Ecto-sp13_S_contig16716.4812.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16716 770..2916 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462876.8354144-UTR-Ecto-sp13_S_contig16716:645..7691681462876.8354144-UTR-Ecto-sp13_S_contig16716:645..769Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16716 646..769 -
1681462876.885039-UTR-Ecto-sp13_S_contig16716:2916..32311681462876.885039-UTR-Ecto-sp13_S_contig16716:2916..3231Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16716 2917..3231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462876.845965-CDS-Ecto-sp13_S_contig16716:769..11201681462876.845965-CDS-Ecto-sp13_S_contig16716:769..1120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16716 770..1120 -
1681462876.8555331-CDS-Ecto-sp13_S_contig16716:1503..17171681462876.8555331-CDS-Ecto-sp13_S_contig16716:1503..1717Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16716 1504..1717 -
1681462876.8653011-CDS-Ecto-sp13_S_contig16716:2040..22641681462876.8653011-CDS-Ecto-sp13_S_contig16716:2040..2264Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16716 2041..2264 -
1681462876.875283-CDS-Ecto-sp13_S_contig16716:2604..29161681462876.875283-CDS-Ecto-sp13_S_contig16716:2604..2916Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16716 2605..2916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16716.4812.1

>prot_Ecto-sp13_S_contig16716.4812.1 ID=prot_Ecto-sp13_S_contig16716.4812.1|Name=mRNA_Ecto-sp13_S_contig16716.4812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=367bp
MPAVEETSYDYSWNAWKNNNTINGYPGYFEAPLTDCWGRTQYDLCVNTNA
ALIIPGVIVVFFSLMCMHCLGFCAPSTRAGLLRELAIEQPQSSRLVKAAC
VKVRATCKKTVKRTGKGGAKIIYTYEGTFVTRDGAVFNLPPPTRLPMGPK
PSRRIEKRMLRVLHNTKRNPRADPSVARRCETPDGLRAEFSNMVKAVPKK
PEASTSGEAFYRSHALGHPNVPFHRDAAADQRFDCILLVGTEQPGRTTRK
VLLVGILGEDRITCVDDELMGASVEDLCCPSFCFVLGAAVLFIMCITLLT
NKAAQNMAAWTFEGDYRVGAVIGLVLCTCVPLSLFVWKCRKSGKLLRSIR
ECPLVAESDRVIVGRT*
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mRNA from alignment at Ecto-sp13_S_contig16716:646..3231-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16716.4812.1 ID=mRNA_Ecto-sp13_S_contig16716.4812.1|Name=mRNA_Ecto-sp13_S_contig16716.4812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2586bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16716:646..3231- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCACTTCGCCTCCAGACTGCCCAGGAGAAAGCCCATACATCCCCGAGGG
CTTCAAGACGGACAACACCCTTCCCCAATGGGAAGCCAACGGTGCCGCCT
GGAAAGAGTGCTACGACGGCTACCGCTGTGAGGCCTGGTGGGGCGGTCTT
GAGGGCTCGCCCGATAGAGAGCCAGTGGTGCTGGACGCCCCGCTGGATTG
GCCGGATTGCTGCGCGCTTTGCAACGGCGGCGGCGACGATGACGGAGATG
AATCTAGCACCAACTCTACTTGCGTGGCGTGGAGCTTTGACCCCTCCACT
GGATCGTGCCAACGAATGCCGGCGGTGGAGGAAACGTCCTACGACTACTC
TTGGAATGCCTGGAAAAACAACAACACCATCAACGGGTACCCCGGCTACT
TCGAGGCTCCACTCACCGACTGCTGGGGTCGGACGCAGTACGACCTCTGC
GTGAATACGAACGCGGCGCTGATTATTCCGGGTGTGATCGTGGTCTTTTT
CAGCCTCATGTGCATGCACTGCCTCGGGTTTTGCGCCCCGTCGACTAGGG
CTGGCCTCTTGCGGGAACTCGCAATAGAACAACCACAGTCATCACGGCTC
GTGAAGGCTGCTTGCGTAAAGGTGAGGGTACATGAAACCGCGCCTGATCG
AAAGTGTTTCTTCGAAATGCTCAAGTTGTCGGTCAATTACCGGTGGGGTG
GACATCGATGGTATGTGCTTGTCTTTGATCGTATGGTGTGTTGCGTTCAG
GGAGTTCTGCTTCTCGTTTTTATTCTCCGCCATTCGAGCTTGACATTGGA
ATTGGTTTTTCGTCCAAGCGGGTGGGTAAATGTCGCCGACCAAACGTAGC
CAACGCGACGCTGCGATGTAGACTCGTGGTACAACAGCTTCTTCAATGTA
GACTCGTTGCTCACCATCCAAAAGGTTCTTCCGCACTTGCCCATGACAAC
TCATGTGCCACACACAGGCTACGTGTAAAAAGACCGTCAAGCGCACCGGC
AAAGGAGGCGCCAAGATCATCTACACCTACGAGGGCACCTTCGTCACCCG
TGACGGCGCTGTGTTCAACCTTCCTCCGCCGACTAGGCTTCCGATGGGGC
CCAAACCCAGCCGCAGGATCGAGAAGAGAATGCTCCGGGTCCTTCACAAC
ACAAAGCGCAACCCCAGGGCCGATCCGTCCGTCGCTCGCCGGTTTGTGGA
TCTTTTGTGTGCGAGATCTGAGCTGTGTGGCTAAGCGCAAATACTGCATT
GCCGACCCGCAATCAAGGAATGTCGGGTCCAGGCTCAATTTCTAATTTCT
TCGCCACCCTCGAGCACAGATAGACGTGTAGACTACGATATCGGGTCCAC
CACTAAGCTGCGTTCCTCAGCCTTAAAACATACAATATCCTTGGAAATTG
AGTTGAGTCCCTGTTTCTCACACTTCCTGTACCATTAGAACGTTTTGTTG
GATCTTGTGCCCGGCTTAACCCCGCCGCTCCCCTTCCGATGCGACCGCTA
TCCCCGGCATGAAGCTGCGAGACGCCAGACGGGCTGAGGGCCGAGTTTTC
GAATATGGTCAAAGCTGTCCCGAAGAAACCTGAGGCAAGTACAAGTGGTG
AGGCCTTCTATCGCAGCCACGCACTAGGTCACCCCAATGTGCCGTTTCAC
CGGGATGCTGCAGCTGATCAGCGCTTCGATTGCATCCTCCTTGTGGGAAC
GGAACAGCCAGGTCGCACGACTAGGAAGGTGAGGAGCAGGCTGAGATGGT
TGATCTACTGCAGGGGATACGTGTTTATTTTACTCGTAACGCAGACAACG
AGTGCCAAGGCGGTGGGGAATATTTTAGAACGTTTGTCATGTCTGCAACA
GCGGTGCTTGGGTAGGTGGTCCAACGCGTGCTCCATAAGAAAGGTCAAGC
CTCAACCTAGCCTAACACGCCGTGAGGCGAGCCATGTGCTGTGCCTAGAG
ACGTCCAGACACAAATTGTGAAGCTATGAAGGGCACGCCACGAGCGCAGT
TAAAGAAGTGAACAGTGCGAAACGCCCAGATCAACACGCCAGCGATTGCG
TTCGACATGCTCCTCCAATTATCATGTTGCGCCGGTCAACCGTGTATCAC
ACGACCCACAGGTACTCTTGGTGGGAATCCTTGGCGAGGACCGCATCACG
TGCGTCGACGACGAGTTGATGGGAGCTTCCGTTGAAGATCTCTGCTGCCC
CTCCTTCTGCTTCGTTCTGGGCGCCGCAGTCCTGTTCATCATGTGTATTA
CTCTCCTGACTAACAAGGCCGCCCAGAATATGGCGGCTTGGACGTTCGAG
GGGGACTATCGCGTCGGGGCTGTTATCGGCCTGGTGTTGTGCACCTGCGT
CCCGCTATCTCTCTTTGTGTGGAAGTGCCGCAAGAGCGGCAAACTGCTAC
GTTCGATCAGGGAGTGTCCGCTGGTGGCCGAATCGGATCGGGTCATCGTT
GGGCGCACGTAGTCAGTCGAATGTCGTGACGAGTCTCGTTTCAAAAATGG
CAAGGTCTAGGATTTGCTGTTGTCTAGAAATACCATGCAGGTGTGATGGC
GTGCAGCTGGCTTGTTGTTTTTTTTCCATTTTGTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16716:646..3231-

>mRNA_Ecto-sp13_S_contig16716.4812.1 ID=mRNA_Ecto-sp13_S_contig16716.4812.1|Name=mRNA_Ecto-sp13_S_contig16716.4812.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1101bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16716:646..3231- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGCGGTGGAGGAAACGTCCTACGACTACTCTTGGAATGCCTGGAA
AAACAACAACACCATCAACGGGTACCCCGGCTACTTCGAGGCTCCACTCA
CCGACTGCTGGGGTCGGACGCAGTACGACCTCTGCGTGAATACGAACGCG
GCGCTGATTATTCCGGGTGTGATCGTGGTCTTTTTCAGCCTCATGTGCAT
GCACTGCCTCGGGTTTTGCGCCCCGTCGACTAGGGCTGGCCTCTTGCGGG
AACTCGCAATAGAACAACCACAGTCATCACGGCTCGTGAAGGCTGCTTGC
GTAAAGGTGAGGGCTACGTGTAAAAAGACCGTCAAGCGCACCGGCAAAGG
AGGCGCCAAGATCATCTACACCTACGAGGGCACCTTCGTCACCCGTGACG
GCGCTGTGTTCAACCTTCCTCCGCCGACTAGGCTTCCGATGGGGCCCAAA
CCCAGCCGCAGGATCGAGAAGAGAATGCTCCGGGTCCTTCACAACACAAA
GCGCAACCCCAGGGCCGATCCGTCCGTCGCTCGCCGCTGCGAGACGCCAG
ACGGGCTGAGGGCCGAGTTTTCGAATATGGTCAAAGCTGTCCCGAAGAAA
CCTGAGGCAAGTACAAGTGGTGAGGCCTTCTATCGCAGCCACGCACTAGG
TCACCCCAATGTGCCGTTTCACCGGGATGCTGCAGCTGATCAGCGCTTCG
ATTGCATCCTCCTTGTGGGAACGGAACAGCCAGGTCGCACGACTAGGAAG
GTACTCTTGGTGGGAATCCTTGGCGAGGACCGCATCACGTGCGTCGACGA
CGAGTTGATGGGAGCTTCCGTTGAAGATCTCTGCTGCCCCTCCTTCTGCT
TCGTTCTGGGCGCCGCAGTCCTGTTCATCATGTGTATTACTCTCCTGACT
AACAAGGCCGCCCAGAATATGGCGGCTTGGACGTTCGAGGGGGACTATCG
CGTCGGGGCTGTTATCGGCCTGGTGTTGTGCACCTGCGTCCCGCTATCTC
TCTTTGTGTGGAAGTGCCGCAAGAGCGGCAAACTGCTACGTTCGATCAGG
GAGTGTCCGCTGGTGGCCGAATCGGATCGGGTCATCGTTGGGCGCACGTA
G
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