mRNA_Ecto-sp13_S_contig16714.4811.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16714.4811.1
Unique NamemRNA_Ecto-sp13_S_contig16714.4811.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16714.4811.1 vs. uniprot
Match: D8LLR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR2_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.640e-39
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:   22 QVTDFGLSRFKATSVSEKMTGQAGTYHWMAPEVINSQHYTEKADVFSYGIILWEIFTRAIPYGGMQPVQV 231
            +VTDFGLSRFKATSVSEKMTGQAGTYHWMAPEVINSQHYTEKADVFSYGIILWEIFTRAIPYGGMQPVQV
Sbjct: 1886 KVTDFGLSRFKATSVSEKMTGQAGTYHWMAPEVINSQHYTEKADVFSYGIILWEIFTRAIPYGGMQPVQV 1955
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BLAST of mRNA_Ecto-sp13_S_contig16714.4811.1 vs. uniprot
Match: A0A6H5JEL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL9_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.640e-39
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:   22 QVTDFGLSRFKATSVSEKMTGQAGTYHWMAPEVINSQHYTEKADVFSYGIILWEIFTRAIPYGGMQPVQV 231
            +VTDFGLSRFKATSVSEKMTGQAGTYHWMAPEVINSQHYTEKADVFSYGIILWEIFTRAIPYGGMQPVQV
Sbjct: 2111 KVTDFGLSRFKATSVSEKMTGQAGTYHWMAPEVINSQHYTEKADVFSYGIILWEIFTRAIPYGGMQPVQV 2180
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BLAST of mRNA_Ecto-sp13_S_contig16714.4811.1 vs. uniprot
Match: A0A835YHY9_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHY9_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.850e-37
Identity = 61/71 (85.92%), Postives = 69/71 (97.18%), Query Frame = 1 
Query:   19 NQVTDFGLSRFKATSVSEKMTGQAGTYHWMAPEVINSQHYTEKADVFSYGIILWEIFTRAIPYGGMQPVQV 231
            ++VTDFGLSRFKATS SEKMTGQAGTYHWM+PEVINSQHYTEKADVFS+GII+WE++TR+IPY GMQPVQV
Sbjct:  208 SKVTDFGLSRFKATSESEKMTGQAGTYHWMSPEVINSQHYTEKADVFSFGIIMWEVYTRSIPYDGMQPVQV 278
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BLAST of mRNA_Ecto-sp13_S_contig16714.4811.1 vs. uniprot
Match: A0A836CAX7_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAX7_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.350e-37
Identity = 61/70 (87.14%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:   22 QVTDFGLSRFKATSVSEKMTGQAGTYHWMAPEVINSQHYTEKADVFSYGIILWEIFTRAIPYGGMQPVQV 231
            +VTDFGLSRFKATS SE+MTGQAGTYHWM+PEVINSQHYTEKADVFS+GII+WEI+TR IPY GMQPVQV
Sbjct:  142 KVTDFGLSRFKATSESERMTGQAGTYHWMSPEVINSQHYTEKADVFSFGIIMWEIYTRNIPYDGMQPVQV 211
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BLAST of mRNA_Ecto-sp13_S_contig16714.4811.1 vs. uniprot
Match: A0A6U4KGP8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KGP8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.810e-29
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:   22 QVTDFGLSRFKATSVSEKMTGQAGTYHWMAPEVINSQHYTEKADVFSYGIILWEIFTRAIPYGGMQPVQV 231
            +VTDFGLSRFKA S++  MTGQ GTYHWMAPEVIN++ Y E+ADV+S+GIILWE++ RAIPY GM PVQ+
Sbjct:  233 KVTDFGLSRFKADSIAGNMTGQTGTYHWMAPEVINAEKYDERADVYSFGIILWEVYGRAIPYEGMTPVQI 302
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BLAST of mRNA_Ecto-sp13_S_contig16714.4811.1 vs. uniprot
Match: A0A7R9YG02_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG02_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.460e-27
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:   22 QVTDFGLSRFKATSVSEKMTGQAGTYHWMAPEVINSQHYTEKADVFSYGIILWEIFTRAIPYGGMQPVQV 231
            +VTDFGLSRFKA SV+  MTGQ GTYHWMAPEVIN++ Y E+AD++S+GIILWE + RAIPY GM PVQ+
Sbjct: 1360 KVTDFGLSRFKADSVAGNMTGQTGTYHWMAPEVINNEKYDERADIYSFGIILWETYGRAIPYEGMTPVQI 1429
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BLAST of mRNA_Ecto-sp13_S_contig16714.4811.1 vs. uniprot
Match: W7TZ73_9STRA (Leucine-rich repeat-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ73_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.000e-27
Identity = 52/70 (74.29%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:   22 QVTDFGLSRFKATSVSEKMTGQAGTYHWMAPEVINSQHYTEKADVFSYGIILWEIFTRAIPYGGMQPVQV 231
            ++TDFGLSRFK  S+++ MT Q GTYHWMAPEVINS  YTEKADV+S+GIILWEI  RAIPY G+QPVQV
Sbjct: 1911 KITDFGLSRFKPHSLTDIMTMQCGTYHWMAPEVINSTQYTEKADVYSFGIILWEIAARAIPYEGLQPVQV 1980
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BLAST of mRNA_Ecto-sp13_S_contig16714.4811.1 vs. uniprot
Match: D8MBR4_BLAHO (Protein kinase domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8MBR4_BLAHO)

HSP 1 Score: 102 bits (255), Expect = 9.470e-25
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:   22 QVTDFGLSRFKATSVS-EKMTGQAGTYHWMAPEVINSQHYTEKADVFSYGIILWEIFTRAIPYGGMQPVQV 231
            +V+DFGLSRFKA   + + MTGQ GT+ WMAPEV++  +YTEKADV+SYGI LWE+ TR IPY GMQP+QV
Sbjct:  182 KVSDFGLSRFKAADTAHDLMTGQCGTFQWMAPEVMDGHNYTEKADVYSYGINLWELLTRKIPYDGMQPMQV 252
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BLAST of mRNA_Ecto-sp13_S_contig16714.4811.1 vs. uniprot
Match: UPI000711E13A (serine/threonine-protein kinase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711E13A)

HSP 1 Score: 105 bits (261), Expect = 1.370e-24
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:   22 QVTDFGLSRFKATSVSEKMTGQAGTYHWMAPEVINSQHYTEKADVFSYGIILWEIFTRAIPYGGMQPVQV 231
            +V+DFGLSRFK+ +    MTGQ GTY WMAPEVI    YTEKADV+SYG+ LWE+ TR IPY GMQP+QV
Sbjct: 1361 KVSDFGLSRFKSAAAHGMMTGQCGTYQWMAPEVIGGHIYTEKADVYSYGVNLWELLTRKIPYDGMQPMQV 1430
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BLAST of mRNA_Ecto-sp13_S_contig16714.4811.1 vs. uniprot
Match: A0A7S1C7U9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7U9_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.800e-24
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:   22 QVTDFGLSRFKATSVSEKMTGQAGTYHWMAPEVINSQHYTEKADVFSYGIILWEIFTRAIPYGGMQPVQV 231
            +V+DFGLSRFKA + +  MT Q GT+HWMAPEV+    YTE+ADV+S+GI LWE+ TR +PY GMQP+QV
Sbjct:  246 KVSDFGLSRFKAMTSTTYMTAQCGTFHWMAPEVVGGNRYTERADVYSFGINLWELLTRQVPYKGMQPMQV 315
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16714.4811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLR2_ECTSI2.640e-3998.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEL9_9PHAE2.640e-3998.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHY9_9STRA1.850e-3785.92Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CAX7_9STRA3.350e-3787.14Kinase-like domain-containing protein (Fragment) n... [more]
A0A6U4KGP8_9STRA4.810e-2971.43Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9YG02_9STRA1.460e-2771.43Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TZ73_9STRA2.000e-2774.29Leucine-rich repeat-containing protein n=2 Tax=Mon... [more]
D8MBR4_BLAHO9.470e-2566.20Protein kinase domain-containing protein n=1 Tax=B... [more]
UPI000711E13A1.370e-2467.14serine/threonine-protein kinase n=1 Tax=Blastocyst... [more]
A0A7S1C7U9_9STRA2.800e-2462.86Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16714contigEcto-sp13_S_contig16714:3491..3721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score147.5
Seed ortholog evalue2.5e-33
Seed eggNOG ortholog2880.D8LLR2
Preferred nameATMRK1
Model size231
KEGG koko:K04424,ko:K16799
KEGG Pathwayko04010,ko04341,map04010,map04341
KEGG ModuleM00678
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004485,GO:0004672,GO:0004674,GO:0004712,GO:0004713,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009791,GO:0009987,GO:0010154,GO:0010344,GO:0016020,GO:0016301,GO:0016310,GO:0016421,GO:0016740,GO:0016772,GO:0016773,GO:0016874,GO:0016885,GO:0018108,GO:0018193,GO:0018212,GO:0019538,GO:0022414,GO:0023052,GO:0031974,GO:0032501,GO:0032502,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0140096,GO:1901564
Exons1
EggNOG free text desc.clathrin-coated pit assembly
EggNOG OGsCOG0515@1,KOG0192@2759,KOG1989@1,KOG1989@2759
EC2.7.11.25
Cds size231
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462876.8021462-CDS-Ecto-sp13_S_contig16714:3490..37211681462876.8021462-CDS-Ecto-sp13_S_contig16714:3490..3721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16714 3491..3721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16714.4811.1prot_Ecto-sp13_S_contig16714.4811.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16714 3491..3721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16714.4811.1

>prot_Ecto-sp13_S_contig16714.4811.1 ID=prot_Ecto-sp13_S_contig16714.4811.1|Name=mRNA_Ecto-sp13_S_contig16714.4811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MFLQRKNQVTDFGLSRFKATSVSEKMTGQAGTYHWMAPEVINSQHYTEKA
DVFSYGIILWEIFTRAIPYGGMQPVQV
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mRNA from alignment at Ecto-sp13_S_contig16714:3491..3721+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16714.4811.1 ID=mRNA_Ecto-sp13_S_contig16714.4811.1|Name=mRNA_Ecto-sp13_S_contig16714.4811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16714:3491..3721+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTCTGCAACGAAAAAACCAGGTAACGGACTTTGGGCTGTCGAGGTT
CAAGGCCACCTCCGTGTCGGAGAAGATGACGGGGCAGGCGGGGACGTACC
ACTGGATGGCCCCGGAGGTGATCAACAGCCAGCACTACACCGAAAAGGCT
GACGTGTTCAGCTACGGCATCATCTTGTGGGAAATCTTCACGAGGGCCAT
TCCCTACGGGGGGATGCAGCCGGTCCAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16714:3491..3721+

>mRNA_Ecto-sp13_S_contig16714.4811.1 ID=mRNA_Ecto-sp13_S_contig16714.4811.1|Name=mRNA_Ecto-sp13_S_contig16714.4811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16714:3491..3721+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTCTGCAACGAAAAAACCAGGTAACGGACTTTGGGCTGTCGAGGTT
CAAGGCCACCTCCGTGTCGGAGAAGATGACGGGGCAGGCGGGGACGTACC
ACTGGATGGCCCCGGAGGTGATCAACAGCCAGCACTACACCGAAAAGGCT
GACGTGTTCAGCTACGGCATCATCTTGTGGGAAATCTTCACGAGGGCCAT
TCCCTACGGGGGGATGCAGCCGGTCCAGGTG
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