mRNA_Ecto-sp13_S_contig10501.480.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig10501.480.1
Unique Name	mRNA_Ecto-sp13_S_contig10501.480.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig10501.480.1 vs. uniprot
Match: D7G4C8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4C8_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 4.120e-47
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 1

Query:    1 NGGMAVLYITGVVYCFLGLAIVCDEFFQTSLEKLSDVLGLTPDVAGATFLAAGSSAPELFTSLADAFGEANSTGTGTIVGSAMFNILVIV 270
            NGGMAVLYI GVVYCFLGLAIVCDEFFQTSLEK+SDVL LTPDVAGATFLAAGSSAPELFTSLADAFGEANSTGTGTIVGSAMFNILVIV
Sbjct:   83 NGGMAVLYIAGVVYCFLGLAIVCDEFFQTSLEKISDVLRLTPDVAGATFLAAGSSAPELFTSLADAFGEANSTGTGTIVGSAMFNILVIV 172

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BLAST of mRNA_Ecto-sp13_S_contig10501.480.1 vs. uniprot
Match: D8LLM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM0_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.660e-32
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 1

Query:   34 VVYCFLGLAIVCDEFFQTSLEKLSDVLGLTPDVAGATFLAAGSSAPELFTSLADAFGEANSTGTGTIVGSAMFNILVIV 270
            +++ F GLAIVCDEFFQ SLEK+S+VLGLTPDVAGATFLAAGSSAPELFTS+AD FG +NS G GTIVGSAMFN+LVIV
Sbjct:   34 ILFTFNGLAIVCDEFFQASLEKISEVLGLTPDVAGATFLAAGSSAPELFTSIADVFGPSNSIGVGTIVGSAMFNVLVIV 112

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BLAST of mRNA_Ecto-sp13_S_contig10501.480.1 vs. uniprot
Match: A0A7S1CDU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDU8_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.080e-31
Identity = 63/90 (70.00%), Postives = 71/90 (78.89%), Query Frame = 1

Query:    1 NGGMAVLYITGVVYCFLGLAIVCDEFFQTSLEKLSDVLGLTPDVAGATFLAAGSSAPELFTSLADAFGEANSTGTGTIVGSAMFNILVIV 270
             G +  L +   +Y FLGLAIVCDE+F  SLE +S+ L LT DVAGATF+AAGSSAPELFTS+ADAFG  NS G GTIVGSAMFNILVIV
Sbjct:   22 GGEIVTLLLVLTLYLFLGLAIVCDEWFVPSLEIISERLDLTEDVAGATFMAAGSSAPELFTSVADAFGPKNSLGVGTIVGSAMFNILVIV 111

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BLAST of mRNA_Ecto-sp13_S_contig10501.480.1 vs. uniprot
Match: A0A7S2JRH5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2JRH5_9DINO)

HSP 1 Score: 113 bits (282), Expect = 4.820e-30
Identity = 59/90 (65.56%), Postives = 70/90 (77.78%), Query Frame = 1

Query:    1 NGGMAVLYITGVVYCFLGLAIVCDEFFQTSLEKLSDVLGLTPDVAGATFLAAGSSAPELFTSLADAFGEANSTGTGTIVGSAMFNILVIV 270
              G A  +    +Y FLG+AI+CDE+F  SLE++S VL L+ DVAGATFLAAGSSAPELFTS+AD FG  N+ G GTIVGSAMFNIL+IV
Sbjct:   22 GAGEAFGFFVLTLYIFLGIAIICDEWFVPSLERISGVLNLSADVAGATFLAAGSSAPELFTSVADTFGPGNNIGIGTIVGSAMFNILIIV 111

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BLAST of mRNA_Ecto-sp13_S_contig10501.480.1 vs. uniprot
Match: A0A7S1CLY4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLY4_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.180e-28
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = 1

Query:    1 NGGMAVLYITGVVYCFLGLAIVCDEFFQTSLEKLSDVLGLTPDVAGATFLAAGSSAPELFTSLADAFGEANSTGTGTIVGSAMFNILVIV 270
            +GG+ V+Y   ++Y  LGLAIVCD+FF  SLE++S+ L L+ DVAGATF+AAGSSAPELFTS  D F   ++ G GTIVGSA+FNILVI+
Sbjct:   31 HGGLVVVYSIVLLYALLGLAIVCDDFFVASLERISEELDLSEDVAGATFMAAGSSAPELFTSTVDVFIFTSNVGIGTIVGSAVFNILVII 120

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BLAST of mRNA_Ecto-sp13_S_contig10501.480.1 vs. uniprot
Match: A0A2R5G219_9STRA (Sodium/potassium/calcium exchanger 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G219_9STRA)

HSP 1 Score: 114 bits (285), Expect = 9.160e-28
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 1

Query:    7 GMAVLYITGVVYCFLGLAIVCDEFFQTSLEKLSDVLGLTPDVAGATFLAAGSSAPELFTSLADAFGEANSTGTGTIVGSAMFNILVIV 270
            G   L +  ++Y FL LAIVCD FF+ SLE++SD L L+ DVAGATF+AAGSSAPELFTS+AD FG  NS G GTIVGSA+FNIL+IV
Sbjct:   73 GKVFLNLLFILYAFLALAIVCDTFFEPSLEQISDKLELSEDVAGATFMAAGSSAPELFTSIADTFGSQNSIGVGTIVGSALFNILIIV 160

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BLAST of mRNA_Ecto-sp13_S_contig10501.480.1 vs. uniprot
Match: A0A7S2NMJ5_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NMJ5_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 2.770e-27
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 1

Query:    7 GMAVLYITGVVYCFLGLAIVCDEFFQTSLEKLSDVLGLTPDVAGATFLAAGSSAPELFTSLADAFGEANSTGTGTIVGSAMFNILVIV 270
            G+  L   G+ Y F  L+IVCD++F  SLE++SDVLGL+PDVAGATF+AAGSSAPELFTSL   F   N  G GTIVGSA+FN+  I+
Sbjct:   86 GVVALLCWGIFYMFWALSIVCDDYFVASLEEISDVLGLSPDVAGATFMAAGSSAPELFTSLMGVFAVQNDVGVGTIVGSAVFNLCCII 173

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BLAST of mRNA_Ecto-sp13_S_contig10501.480.1 vs. uniprot
Match: A0A7S0HY89_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HY89_9EUKA)

HSP 1 Score: 106 bits (265), Expect = 3.430e-27
Identity = 54/84 (64.29%), Postives = 64/84 (76.19%), Query Frame = 1

Query:   19 LYITGVVYCFLGLAIVCDEFFQTSLEKLSDVLGLTPDVAGATFLAAGSSAPELFTSLADAFGEANSTGTGTIVGSAMFNILVIV 270
            + I G+ Y F GLAIVCD++F TSLE +S+ L LTPDVAGATF+AAGSSAPELFTSL   F   N  G GTIVGSA+FN+  I+
Sbjct:   80 MLIWGIFYMFWGLAIVCDDYFVTSLEDISEALSLTPDVAGATFMAAGSSAPELFTSLMGVFAVKNDVGIGTIVGSAVFNLCCII 163

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BLAST of mRNA_Ecto-sp13_S_contig10501.480.1 vs. uniprot
Match: A0A2P4WWR2_9STRA (Ca2:Cation Antiporter (CaCA) Family (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWR2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 6.000e-27
Identity = 57/92 (61.96%), Postives = 74/92 (80.43%), Query Frame = 1

Query:    1 NGGMAVLYITGVVYCFLGLAIVCDEFFQTSLEKLSDVLGLTPDVAGATFLAAGSSAPELFTSLADAFGE--ANSTGTGTIVGSAMFNILVIV 270
            NGG+ +LYI  + Y F+ LAI+CD++F ++LEK+SD L L+PDVAGATF+AAGSSAPELF SLAD   +  A S G GTIVGSA+FN+L+I+
Sbjct:   37 NGGI-ILYIMALGYIFVALAIICDDYFVSALEKISDALALSPDVAGATFMAAGSSAPELFVSLADNVFKKPAESLGVGTIVGSAIFNVLIII 127

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BLAST of mRNA_Ecto-sp13_S_contig10501.480.1 vs. uniprot
Match: A0A7S0Q286_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q286_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 1.000e-26
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 1

Query:   16 VLYITGVVYCFLGLAIVCDEFFQTSLEKLSDVLGLTPDVAGATFLAAGSSAPELFTSLADAFGEANSTGTGTIVGSAMFNILVIV 270
            V+ + GV Y F GLAIVCD++F TSL+ +S  LGL+PDVAGATF+AAGSSAPELFTSL   F   N  G GTIVGSA+FN+  I+
Sbjct:   52 VMLLWGVFYMFWGLAIVCDDYFVTSLDDISTALGLSPDVAGATFMAAGSSAPELFTSLMGVFAVENDVGIGTIVGSAVFNLCCII 136

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10501.480.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10501.480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G4C8_ECTSI	4.120e-47	96.67	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D8LLM0_ECTSI	1.660e-32	81.01	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S1CDU8_9STRA	1.080e-31	70.00	Hypothetical protein (Fragment) n=1 Tax=Bicosoecid...	[more]
A0A7S2JRH5_9DINO	4.820e-30	65.56	Hypothetical protein (Fragment) n=1 Tax=Brandtodin...	[more]
A0A7S1CLY4_9STRA	3.180e-28	62.22	Hypothetical protein (Fragment) n=1 Tax=Bicosoecid...	[more]
A0A2R5G219_9STRA	9.160e-28	67.05	Sodium/potassium/calcium exchanger 1 n=1 Tax=Honda...	[more]
A0A7S2NMJ5_9EUKA	2.770e-27	61.36	Hypothetical protein (Fragment) n=2 Tax=Haptolina ...	[more]
A0A7S0HY89_9EUKA	3.430e-27	64.29	Hypothetical protein (Fragment) n=1 Tax=Phaeocysti...	[more]
A0A2P4WWR2_9STRA	6.000e-27	61.96	Ca2:Cation Antiporter (CaCA) Family (Fragment) n=1...	[more]
A0A7S0Q286_9EUKA	1.000e-26	63.53	Hypothetical protein (Fragment) n=1 Tax=Coccolithu...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig10501	contig	Ecto-sp13_S_contig10501:2..271 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	157.5
Seed ortholog evalue	2.8e-36
Seed eggNOG ortholog	2880.D7G4C8
Model size	270
KEGG ko	ko:K13751,ko:K13752,ko:K13753
KEGG TC	2.A.19.4,2.A.19.4.5,2.A.19.4.6
KEGG Pathway	ko04740,map04740
Hectar predicted targeting category	signal peptide
Exons	1
EggNOG free text desc.	calcium, potassium:sodium antiporter activity
EggNOG OGs	COG0530@1,KOG1307@2759
Cds size	261
COG Functional cat.	P
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko02000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462535.3626993-CDS-Ecto-sp13_S_contig10501:1..262	1681462535.3626993-CDS-Ecto-sp13_S_contig10501:1..262	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig10501 2..262 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462535.3734531-UTR-Ecto-sp13_S_contig10501:262..271	1681462535.3734531-UTR-Ecto-sp13_S_contig10501:262..271	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig10501 263..271 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig10501.480.1	prot_Ecto-sp13_S_contig10501.480.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig10501 2..262 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig10501:2..271-
coding sequence from alignment at Ecto-sp13_S_contig10501:2..271-

protein sequence of mRNA_Ecto-sp13_S_contig10501.480.1

>prot_Ecto-sp13_S_contig10501.480.1 ID=prot_Ecto-sp13_S_contig10501.480.1|Name=mRNA_Ecto-sp13_S_contig10501.480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MAVLYITGVVYCFLGLAIVCDEFFQTSLEKLSDVLGLTPDVAGATFLAAG
SSAPELFTSLADAFGEANSTGTGTIVGSAMFNILVIV

mRNA from alignment at Ecto-sp13_S_contig10501:2..271-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig10501.480.1 ID=mRNA_Ecto-sp13_S_contig10501.480.1|Name=mRNA_Ecto-sp13_S_contig10501.480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10501:2..271- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGGGGGCATGGCGGTGTTGTATATCACCGGCGTGGTGTACTGTTTTCT
TGGGCTAGCGATAGTGTGCGACGAATTCTTTCAGACGTCTCTTGAGAAGC
TTTCGGATGTCCTCGGGCTCACGCCCGACGTTGCCGGGGCGACCTTCCTC
GCCGCCGGGTCTTCGGCACCAGAGTTATTCACGTCTCTCGCAGACGCGTT
TGGCGAAGCCAACTCGACGGGAACGGGAACGATCGTCGGCTCGGCGATGT
TCAACATCCTTGTCATCGTG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10501:2..271-

>mRNA_Ecto-sp13_S_contig10501.480.1 ID=mRNA_Ecto-sp13_S_contig10501.480.1|Name=mRNA_Ecto-sp13_S_contig10501.480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10501:2..271- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGTGTTGTATATCACCGGCGTGGTGTACTGTTTTCTTGGGCTAGC
GATAGTGTGCGACGAATTCTTTCAGACGTCTCTTGAGAAGCTTTCGGATG
TCCTCGGGCTCACGCCCGACGTTGCCGGGGCGACCTTCCTCGCCGCCGGG
TCTTCGGCACCAGAGTTATTCACGTCTCTCGCAGACGCGTTTGGCGAAGC
CAACTCGACGGGAACGGGAACGATCGTCGGCTCGGCGATGTTCAACATCC
TTGTCATCGTG