mRNA_Ecto-sp13_S_contig16700.4805.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16700.4805.1
Unique NamemRNA_Ecto-sp13_S_contig16700.4805.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16700.4805.1 vs. uniprot
Match: D7G844_ECTSI (Prenylcys_lyase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G844_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 4.840e-70
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 1 
Query:    1 YVHDGKVLESGASVIYTGNAYLFNLTERVHLNKLDPSKQEGPNTGLWDGERFVLKTTSSAIANLARMVWRYGMSLLKMRSMVYEALAKFDRIYDLQADGRVFETPEDLWS 330
            YVHDGKVLESGASVIYTGNAYLFNLTERVHLNKLDPSKQEGPNTGLWDGERFVLKTTSS IANLARMVWRYGMSLLKMRSMVYEALAKFDRIYDLQADGRVFETPEDLWS
Sbjct:   70 YVHDGKVLESGASVIYTGNAYLFNLTERVHLNKLDPSKQEGPNTGLWDGERFVLKTTSSGIANLARMVWRYGMSLLKMRSMVYEALAKFDRIYDLQADGRVFETPEDLWS 179
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BLAST of mRNA_Ecto-sp13_S_contig16700.4805.1 vs. uniprot
Match: A0A061SER2_9CHLO (Prenylcysteine oxidase / farnesylcysteine lyase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SER2_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 2.620e-17
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 1 
Query:    1 YVHDGKVLESGASVIYTGNAYLFNLTERVHLNKLDPSKQEGPNTGL---WDGERFVLKTTSSAIANLARMVWRYGMSLLKMRSMVYEALAKFDRIYDLQADGRVFETPEDL 324
            + + GK  E GAS+IY GN Y+ N TER+ + +    K+ G    L   W+GE+F    +SS +  L R  WR+GM  +  + +  E +  F+RIY++Q +GR F+ PED+
Sbjct:   77 FSYGGKTYELGASIIYEGNRYVVNATERLGVLRQKVDKELGIYNNLFSLWNGEQFAFVESSSYLKTLLRSWWRWGMYPMAFKRIPQEFVRSFNRIYEIQEEGRAFDNPEDM 187
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BLAST of mRNA_Ecto-sp13_S_contig16700.4805.1 vs. uniprot
Match: A0A250X1R3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X1R3_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 1.170e-15
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 1 
Query:    1 YVHDGKVLESGASVIYTGNAYLFNLTERVHLNKLDPSKQEGPNTGLWDGERFVLKTTSSAIANLARMVWRYGMSLLKMRSMVYEALAKFDRIYDLQADGRVFETPEDLWS 330
            ++HDGKVLE GAS+I   N YL    + ++L+   PS++      ++DG + V   TSS  + LAR +W+YG+S         +    F +IYDLQ  GR F++PE + S
Sbjct:   97 FIHDGKVLELGASIISDHNFYLAEAAQELNLDVAPPSEEGSGGFSIFDGTKIVHNQTSSWFS-LARSLWKYGLSPFMYGRKTKQMFDGFKQIYDLQNQGRAFDSPESMLS 205
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BLAST of mRNA_Ecto-sp13_S_contig16700.4805.1 vs. uniprot
Match: UPI001FB8592E (prenylcysteine oxidase-like n=1 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB8592E)

HSP 1 Score: 79.0 bits (193), Expect = 7.220e-15
Identity = 39/100 (39.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   13 GKVLESGASVIYTGNAYLFNLTERVHLNKLDPSKQEGPNT--GLWDGERFVLKTTSSAIANLARMVWRYGMSLLKMRSMVYEALAKFDRIYDLQADGRVF 306
            G   E G SVI+  N Y+    E+  L    P K+   ++  GL++GE++V + +S ++ N+A+++WRYG  L+++RS + E L KF RIY LQA+G+ F
Sbjct:   79 GHTYEVGGSVIHPDNRYMVEFAEKFGL----PKKEHCSDSLFGLFNGEKYVFRESSWSLMNIAKLMWRYGTDLIRLRSELKEILRKFSRIYHLQAEGQAF 174
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BLAST of mRNA_Ecto-sp13_S_contig16700.4805.1 vs. uniprot
Match: S4R4B0_PETMA (Prenylcysteine oxidase 1 like n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4R4B0_PETMA)

HSP 1 Score: 75.1 bits (183), Expect = 1.630e-13
Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:   10 DGKVLESGASVIYTGNAYLFNLTERVHLNKLDPSKQEGPNTGLWDGERFVLKTTSSAIANLARMVWRYGMSLLKMRSMVYEALAKFDRIYDLQADGRVFETPEDL 324
            +GKV E+GAS+I+  N ++ +  + + L + +     G   G+++GE+FV + +S  + +   ++WRYG+S L+M+  V E L KF RIY  Q+ G  F T EDL
Sbjct:   73 NGKVYETGASIIHPLNLHMQSFVKDLGLKQRNDVP--GEKLGIFNGEQFVFEESSWTVMDAVHLLWRYGLSYLRMQMWVEEILDKFLRIYKYQSHGFAFSTNEDL 175
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BLAST of mRNA_Ecto-sp13_S_contig16700.4805.1 vs. uniprot
Match: A0A2P2J4M1_RHIMU (Prenylcys_lyase domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2J4M1_RHIMU)

HSP 1 Score: 73.6 bits (179), Expect = 1.930e-13
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:   13 GKVLESGASVIYTGNAYLFNLTERVHLN-KLDPSKQEGPNTGLWDGERFVLKTTSS-----------AIANLARMVWRYGMSLLKMRSMVYEALAKFDRIYDLQADGRVFETPEDL 324
            G+  E+GAS+++  N Y  N TE +HL  KL PS +   + G+WDGE+F LKT +            + AN   ++ RYG SLL+M+S V   + KF + Y+      +F+T +++
Sbjct:   88 GETFEAGASILHPKNYYAGNFTELLHLKRKLPPSSESSLSLGIWDGEKFSLKTLTVESKIPLVQKIVSFANSVYILLRYGFSLLRMQSFVEITVNKFLKYYESFETRPIFKTVDEM 203
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BLAST of mRNA_Ecto-sp13_S_contig16700.4805.1 vs. uniprot
Match: A0A2P2J4M8_RHIMU (Prenylcys_lyase domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2J4M8_RHIMU)

HSP 1 Score: 73.6 bits (179), Expect = 5.680e-13
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:   13 GKVLESGASVIYTGNAYLFNLTERVHLN-KLDPSKQEGPNTGLWDGERFVLKTTSS-----------AIANLARMVWRYGMSLLKMRSMVYEALAKFDRIYDLQADGRVFETPEDL 324
            G+  E+GAS+++  N Y  N TE +HL  KL PS +   + G+WDGE+F LKT +            + AN   ++ RYG SLL+M+S V   + KF + Y+      +F+T +++
Sbjct:   88 GETFEAGASILHPKNYYAGNFTELLHLKRKLPPSSESSLSLGIWDGEKFSLKTLTVESKIPLVQKIVSFANSVYILLRYGFSLLRMQSFVEITVNKFLKYYESFETRPIFKTVDEM 203
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BLAST of mRNA_Ecto-sp13_S_contig16700.4805.1 vs. uniprot
Match: A0A5E4MX69_9HEMI (Prenylcysteine lyase,FAD/NAD(P)-binding domain n=1 Tax=Cinara cedri TaxID=506608 RepID=A0A5E4MX69_9HEMI)

HSP 1 Score: 72.8 bits (177), Expect = 1.040e-12
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:    4 VHDGKVLESGASVIYTGNAYLFNLTERVHLNKLDPSKQEGPNTGLWDGERFVLKTTSSAIANLARMVWRYGMSLLKMRSMVYEALAKFDRIYDLQADGRVFETPEDL 324
            ++DG   E+G SVI+  N Y+ +      L K + S  +    G ++G+ F     +  I +L  + WRYG SL  +   VY  L KFD+IY+LQA+G+ F+T  DL
Sbjct:   68 MNDGNEYETGGSVIHQRNKYMSDFVNHFGLQKRN-SLFKNERLGFYNGKDFDFIENNYFILHLMNIYWRYGYSLKHLNDFVYSMLDKFDKIYELQANGQSFDTTYDL 173
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BLAST of mRNA_Ecto-sp13_S_contig16700.4805.1 vs. uniprot
Match: A0A6A4VJ02_AMPAM (Prenylcysteine oxidase n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VJ02_AMPAM)

HSP 1 Score: 71.6 bits (174), Expect = 2.220e-12
Identity = 38/105 (36.19%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:   10 DGKVLESGASVIYTGNAYLFNLTERVHLNKLDPSKQEGPNTGLWDGERFVLKTTSSAIANLARMVWRYGMSLLKMRSMVYEALAKFDRIYDLQADGRVFETPEDL 324
            DG   E+G SVI+T N  +  L E + L +  P+   G   GLW+G   V  +++ +    A+++WRYG  + ++R ++   LAKFD IY L   G  ++T EDL
Sbjct:   67 DGHRYEAGGSVIHTKNRCMMELIESLGL-QTKPAM--GGTFGLWNGRELVFTSSAWSAITSAKLLWRYGSDVFRLRRLLSATLAKFDGIYSLLDSGAAYDTVEDL 168
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BLAST of mRNA_Ecto-sp13_S_contig16700.4805.1 vs. uniprot
Match: UPI001C90DEFB (prenylcysteine oxidase-like n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C90DEFB)

HSP 1 Score: 71.6 bits (174), Expect = 2.670e-12
Identity = 38/105 (36.19%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:   10 DGKVLESGASVIYTGNAYLFNLTERVHLNKLDPSKQEGPNTGLWDGERFVLKTTSSAIANLARMVWRYGMSLLKMRSMVYEALAKFDRIYDLQADGRVFETPEDL 324
            DG   E+G SVI+T N  +  L E + L +  P+   G   GLW+G   V  +++ +    A+++WRYG  + ++R ++   LAKFD IY L   G  ++T EDL
Sbjct:   67 DGHRYEAGGSVIHTKNRCMMELIESLGL-QTKPAM--GGTFGLWNGRELVFTSSTWSAITSAKLLWRYGSDVFRLRRLLSATLAKFDGIYSLLDSGAAYDTVEDL 168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16700.4805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G844_ECTSI4.840e-7099.09Prenylcys_lyase domain-containing protein n=2 Tax=... [more]
A0A061SER2_9CHLO2.620e-1737.84Prenylcysteine oxidase / farnesylcysteine lyase n=... [more]
A0A250X1R3_9CHLO1.170e-1538.18Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
UPI001FB8592E7.220e-1539.00prenylcysteine oxidase-like n=1 Tax=Penaeus chinen... [more]
S4R4B0_PETMA1.630e-1337.14Prenylcysteine oxidase 1 like n=2 Tax=Petromyzon m... [more]
A0A2P2J4M1_RHIMU1.930e-1335.34Prenylcys_lyase domain-containing protein n=1 Tax=... [more]
A0A2P2J4M8_RHIMU5.680e-1335.34Prenylcys_lyase domain-containing protein n=1 Tax=... [more]
A0A5E4MX69_9HEMI1.040e-1236.45Prenylcysteine lyase,FAD/NAD(P)-binding domain n=1... [more]
A0A6A4VJ02_AMPAM2.220e-1236.19Prenylcysteine oxidase n=1 Tax=Amphibalanus amphit... [more]
UPI001C90DEFB2.670e-1236.19prenylcysteine oxidase-like n=1 Tax=Amphibalanus a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16700contigEcto-sp13_S_contig16700:2786..3436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score225.3
Seed ortholog evalue1.4e-56
Seed eggNOG ortholog2880.D7G844
Preferred namePCYOX1L
Model size330
KEGG rclassRC00069,RC02012
KEGG koko:K05906
KEGG ReactionR09562
KEGG Pathwayko00900,ko01130,map00900,map01130
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000098,GO:0000323,GO:0001101,GO:0001735,GO:0002576,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005774,GO:0005886,GO:0006082,GO:0006508,GO:0006520,GO:0006575,GO:0006629,GO:0006644,GO:0006720,GO:0006721,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006887,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008509,GO:0008555,GO:0009056,GO:0009057,GO:0009063,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009755,GO:0009987,GO:0010033,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015318,GO:0015399,GO:0015405,GO:0015698,GO:0016020,GO:0016054,GO:0016192,GO:0016462,GO:0016491,GO:0016667,GO:0016670,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0019637,GO:0019752,GO:0019941,GO:0022804,GO:0022857,GO:0023052,GO:0030141,GO:0030163,GO:0030327,GO:0030328,GO:0030329,GO:0031090,GO:0031091,GO:0031093,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032870,GO:0032940,GO:0032991,GO:0032994,GO:0033993,GO:0034220,GO:0034358,GO:0034361,GO:0034385,GO:0034774,GO:0042219,GO:0042221,GO:0042623,GO:0042626,GO:0043170,GO:0043225,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043492,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044273,GO:0044281,GO:0044282,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045338,GO:0046395,GO:0046903,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0051716,GO:0055085,GO:0055114,GO:0060205,GO:0065007,GO:0070013,GO:0070887,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071495,GO:0071704,GO:0071944,GO:0097305,GO:0097306,GO:0097708,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0099133,GO:0099503,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1901701,GO:1902476,GO:1990777
Exons2
EggNOG free text desc.prenylcysteine oxidase activity
EggNOG OGs2CMX8@1,2QSHJ@2759
EC1.8.3.5,1.8.3.6
Cds size330
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462876.3736353-CDS-Ecto-sp13_S_contig16700:2785..28971681462876.3736353-CDS-Ecto-sp13_S_contig16700:2785..2897Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16700 2786..2897 -
1681462876.3852863-CDS-Ecto-sp13_S_contig16700:3218..34361681462876.3852863-CDS-Ecto-sp13_S_contig16700:3218..3436Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16700 3219..3436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16700.4805.1prot_Ecto-sp13_S_contig16700.4805.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16700 2786..3436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16700.4805.1

>prot_Ecto-sp13_S_contig16700.4805.1 ID=prot_Ecto-sp13_S_contig16700.4805.1|Name=mRNA_Ecto-sp13_S_contig16700.4805.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
YVHDGKVLESGASVIYTGNAYLFNLTERVHLNKLDPSKQEGPNTGLWDGE
RFVLKTTSSAIANLARMVWRYGMSLLKMRSMVYEALAKFDRIYDLQADGR
VFETPEDLWS
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mRNA from alignment at Ecto-sp13_S_contig16700:2786..3436-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16700.4805.1 ID=mRNA_Ecto-sp13_S_contig16700.4805.1|Name=mRNA_Ecto-sp13_S_contig16700.4805.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16700:2786..3436- (Ectocarpus species13 EcNAP12_S_4_19m)
TATGTGCACGACGGGAAGGTGCTCGAGAGTGGCGCTTCCGTCATCTACAC
AGGCAACGCCTACCTCTTCAACCTCACCGAGCGCGTCCACCTGAACAAGC
TTGACCCCAGCAAGCAGGAAGGGCCGAACACGGGACTGTGGGACGGAGAA
CGGTTTGTCCTCAAGACGACCAGTTCGGCCATAGCCAACCTCGCTCGCAT
GGTGTGGCGATACGGAATGTGAGGTCCTTTCGTGGTCACAGGGCTGGTTG
TTGCTCACACCCAGTGTTGATAAGACACGATATATTCTCGCGGCAGGTTT
CGGAAGAGTTATTGCATGCGTGCAGCGCAGCAGGTACATTAAATAGCCGC
GGTAATGGTGATAGCTTCAGTACGTTCGTGACAGTGATTGGCCGAAGTAC
CCCGCGCTGCGACAAGCATGATACGCCGTCCGCGCGCATGTTCCATAGAC
GACACACGAAAGCGCTGAATGGCGTACAACTGGCACCCTTGCACTTTGCA
ATTTTGCTGCGTGTTCCGTCCCAACACGTAATCCCACAGGTCATTGCTCA
AGATGAGATCTATGGTGTATGAGGCCCTAGCAAAGTTCGACCGTATTTAT
GACCTACAGGCGGACGGCAGGGTGTTCGAGACGCCGGAAGACCTGTGGAG
T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16700:2786..3436-

>mRNA_Ecto-sp13_S_contig16700.4805.1 ID=mRNA_Ecto-sp13_S_contig16700.4805.1|Name=mRNA_Ecto-sp13_S_contig16700.4805.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16700:2786..3436- (Ectocarpus species13 EcNAP12_S_4_19m)
TATGTGCACGACGGGAAGGTGCTCGAGAGTGGCGCTTCCGTCATCTACAC
AGGCAACGCCTACCTCTTCAACCTCACCGAGCGCGTCCACCTGAACAAGC
TTGACCCCAGCAAGCAGGAAGGGCCGAACACGGGACTGTGGGACGGAGAA
CGGTTTGTCCTCAAGACGACCAGTTCGGCCATAGCCAACCTCGCTCGCAT
GGTGTGGCGATACGGAATGTCATTGCTCAAGATGAGATCTATGGTGTATG
AGGCCCTAGCAAAGTTCGACCGTATTTATGACCTACAGGCGGACGGCAGG
GTGTTCGAGACGCCGGAAGACCTGTGGAGT
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