mRNA_Ecto-sp13_S_contig16697.4798.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16697.4798.1
Unique NamemRNA_Ecto-sp13_S_contig16697.4798.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16697.4798.1 vs. uniprot
Match: D7FP74_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP74_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 1.090e-92
Identity = 327/341 (95.89%), Postives = 330/341 (96.77%), Query Frame = 2 
Query:   65 MIGRDQQHAFLRGFEPELVKLVFDTATDEQLAAWLRLSLELAADNNHLELISRLENAGAEGSRFHLAVRQGNGILVTDTMKRGESPDARDGNGDAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVSPFLDSESCSXXXXXXXXXXXXXXXXXXKHGADMDGAASTGLTLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANHRNPRIEKDVVNLRFGREPSPLELAACHGHAHVVRTMLRHGADVDSKDCPYQPALHRAA 1087
            MIGRDQQHAFLRGFEPELVKL+FDTAT EQL AWLRLSLELAADN HLELISRLENAGA GSRFHLAVRQGNG+LV DT+KRGESPDARDGNGDAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVSPFLDSESCSXXXXXXXXXXXXXXXXX KHGADMD AASTGLTLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANHRNP IE DVVNLRFG EPSPLELAACHGHAHVVRTMLRHGADVDS DCPYQPALHRAA
Sbjct:    1 MIGRDQQHAFLRGFEPELVKLMFDTATAEQLEAWLRLSLELAADNKHLELISRLENAGAVGSRFHLAVRQGNGMLVADTIKRGESPDARDGNGDAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVSPFLDSESCSXXXXXXXXXXXXXXXXXAKHGADMDAAASTGLTLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANHRNPIIENDVVNLRFGGEPSPLELAACHGHAHVVRTMLRHGADVDSTDCPYQPALHRAA 341
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BLAST of mRNA_Ecto-sp13_S_contig16697.4798.1 vs. uniprot
Match: A0A6H5JKG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG9_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 5.990e-43
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 2 
Query:   65 MIGRDQQHAFLRGFEPELVKLVFDTATDEQLAAWLRLSLELAADNNHLELISRLENAGAEGSRFHLAVRQGNGILVTDTMKRGESPDAR 331
            M+GRD QHA LRGFEPELV+LVFDTAT EQL AWLRLSLELAADN HLELISRLENAGA GSRFHLAVRQGNG+LVTDT+KRGESP+AR
Sbjct:    1 MVGRDHQHACLRGFEPELVRLVFDTATAEQLEAWLRLSLELAADNKHLELISRLENAGAVGSRFHLAVRQGNGMLVTDTIKRGESPNAR 89
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BLAST of mRNA_Ecto-sp13_S_contig16697.4798.1 vs. uniprot
Match: D7G751_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.270e-6
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 2 
Query:   95 LRGFEPELVKLVFDTATDEQLAAWLRLSLELAADNNHLELISRLENAGAEGSRFHLAVRQGNGILVTDTMKRGESPDARDGNGD 346
            LRG E  +  LV       Q A WLR  LE AA   +++L+++L+ AGA GS  HLA+R G   L  + ++ G    A+D NGD
Sbjct:   26 LRGTEKTIFDLVCAGTNRRQWAEWLRTPLEHAAGVGNIDLVTKLQGAGAGGSALHLALRAGQDALAQELLRLGAPTKAKDNNGD 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16697.4798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FP74_ECTSI1.090e-9295.89Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
A0A6H5JKG9_9PHAE5.990e-4387.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G751_ECTSI1.270e-640.48Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16697contigEcto-sp13_S_contig16697:1413..3820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score298.9
Seed ortholog evalue4.6e-78
Seed eggNOG ortholog2880.D7FP74
Model size1576
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_000580.1
Cds size1560
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462875.4352372-UTR-Ecto-sp13_S_contig16697:1412..14281681462875.4352372-UTR-Ecto-sp13_S_contig16697:1412..1428Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16697 1413..1428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462875.4471736-CDS-Ecto-sp13_S_contig16697:1428..17421681462875.4471736-CDS-Ecto-sp13_S_contig16697:1428..1742Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16697 1429..1742 +
1681462875.4562361-CDS-Ecto-sp13_S_contig16697:2342..24801681462875.4562361-CDS-Ecto-sp13_S_contig16697:2342..2480Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16697 2343..2480 +
1681462875.4657505-CDS-Ecto-sp13_S_contig16697:2712..38201681462875.4657505-CDS-Ecto-sp13_S_contig16697:2712..3820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16697 2713..3820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16697.4798.1prot_Ecto-sp13_S_contig16697.4798.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16697 1429..3820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16697.4798.1

>prot_Ecto-sp13_S_contig16697.4798.1 ID=prot_Ecto-sp13_S_contig16697.4798.1|Name=mRNA_Ecto-sp13_S_contig16697.4798.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=520bp
MHTPSSALSKHRGRTRMIGRDQQHAFLRGFEPELVKLVFDTATDEQLAAW
LRLSLELAADNNHLELISRLENAGAEGSRFHLAVRQGNGILVTDTMKRGE
SPDARDGNGDAPLHIAGARGDVDLVRLLLSSGADPNLPDRKQRTPLHVAA
RYGHAETAGALLSGGAWVSPFLDSESCSPLELAVRHGHVDVVGVLAKHGA
DMDGAASTGLTLLHLAASEDMVDLLQCLVAAGASLESRDMDGSTALHIAA
EKGAAAAVKVLLALGARPCESNGDSLSPLGLACKGGHLQAVLAILAANHR
NPRIEKDVVNLRFGREPSPLELAACHGHAHVVRTMLRHGADVDSKDCPYQ
PALHRAADGGHVDVLQVLIDHGADLDAVDADAETALHHAATFDQSGAVDV
LVRAGANIEAVGEELYTPLHLACQFRKREATRALLAHGANVQTADENGCT
PLHSAASNADAQVVELLLRFGADAAATSAAGSTAAEVIAHNCDGEQVQAE
KIEQLESLLICAGLDDINND
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mRNA from alignment at Ecto-sp13_S_contig16697:1413..3820+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16697.4798.1 ID=mRNA_Ecto-sp13_S_contig16697.4798.1|Name=mRNA_Ecto-sp13_S_contig16697.4798.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16697:1413..3820+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTTCTCCAAGCATCGATGCACACACCTTCAAGTGCACTGAGCAAACATA
GAGGGCGAACCAGGATGATTGGCAGAGATCAGCAACATGCTTTCCTGAGG
GGGTTTGAACCTGAGCTCGTGAAACTGGTGTTCGATACTGCCACCGACGA
GCAATTGGCGGCGTGGCTGCGGCTGTCGTTGGAGCTTGCAGCAGATAACA
ACCACCTCGAGCTGATATCAAGACTTGAAAACGCGGGAGCGGAGGGCAGC
AGGTTTCATCTAGCCGTGAGGCAAGGGAACGGGATACTGGTGACCGACAC
AATGAAGCGTGGGGAGTCACCTGATGCCAGGTGCGTGCACTCCACATCGT
ATGAATAGAGTTGCGTATACGAAAGCTGCACACATTGTCTAACTCAACTA
ATTATTTCACGCACCTCCGCCGTCGTCGATGGCCCCAGTGACACCATCAA
CTGGCACCGCTGTAGAAGCGTACGTGTAATTCTACCAAATGTAACGTAGT
TTGCATAATATACGGCTCAACCTGAGGGGGGGTAGTAGTTTATGCCACCG
TTTGATAAAATGGCGTTTTTTCGGGCCTAATAGAAGAGCAAAAGTGTTTG
CTATTCGGTAACTTTCGAAGAGGCTGTGGTATATTATGCAACCTACGGTA
TGCGGTACATCGTGTGGCAGCAGCAGAACAATACACATGCAACTTATACT
CCCACGAACTGCCGTAGAAACGAAAATGTTGGGAGAAAAACGTTTCCGAT
ACAATCGTCGCAGACGACGTCACGTTCACGCCTCCTGTGCGAGCGTCGCG
TTGTTTTTCTTGTAGACTGCAGGTCATGTACAGAGGGTGACATCCGACCC
ACGCCACAATCATTTAGGCGTCCTTTAATTGGTCCCGAGTTATTACTCAC
GATCCACACACACACGCACGTCCAGCGCAGGGACGGAAATGGCGACGCTC
CTCTTCATATCGCTGGAGCGCGAGGGGACGTAGACCTGGTACGCTTGCTG
CTGTCAAGCGGGGCTGACCCCAATCTGCCAGACAGGAAACAACGCACCCC
TCTCCACGTCGCAGCCAGGTGCGTTGTTTGACGCCTCAAATACCAACGAC
ATGCGACAGACATGCAACACACACCGACACATTATTTCAAGGTACAAGAT
TGTAAAGTCTGGTACGCGTGGAAAGTAGGAGTACAAATATTCGTGTAGAA
GTCTCCAAGGTAAAACCTCACGTTGAACCCTTCCACCGTTCAGGAGATAA
AACCGTTCGAGGCATTCGCGTCTTGTGGACTTTGAATGCAAAAAACAAAG
GTATGGCCACGCGGAAACGGCGGGCGCTTTGCTTTCGGGAGGGGCCTGGG
TTAGCCCCTTTCTCGACTCGGAGAGCTGCTCTCCGCTAGAGCTAGCCGTT
CGCCACGGGCATGTGGACGTCGTAGGGGTCCTTGCCAAGCATGGAGCGGA
CATGGATGGCGCAGCTTCTACTGGCCTGACACTTCTGCACCTTGCTGCCA
GTGAAGACATGGTGGACCTACTGCAGTGCCTCGTAGCCGCGGGGGCTAGC
CTGGAATCGCGGGACATGGACGGATCGACGGCCCTCCACATCGCCGCCGA
AAAAGGCGCGGCGGCCGCAGTTAAGGTCCTGTTAGCACTCGGAGCTCGTC
CCTGCGAATCCAACGGCGACAGTCTTTCTCCCCTCGGTTTAGCTTGCAAG
GGTGGCCACCTGCAGGCCGTCCTCGCGATTCTGGCGGCGAACCATCGCAA
CCCCAGAATCGAAAAAGACGTCGTTAACCTTCGCTTCGGAAGGGAGCCCT
CGCCGCTCGAACTGGCTGCCTGCCACGGCCACGCACACGTCGTGAGGACC
ATGCTCCGCCACGGCGCGGACGTGGACAGCAAGGACTGTCCGTACCAGCC
GGCCCTACACCGAGCTGCTGATGGAGGCCACGTGGATGTGCTACAAGTGT
TGATAGATCACGGAGCGGATTTGGACGCTGTCGATGCTGACGCAGAAACA
GCCCTCCATCACGCAGCAACATTTGATCAATCCGGCGCGGTCGACGTTCT
CGTGCGGGCTGGCGCCAACATCGAAGCGGTGGGGGAAGAGTTGTATACGC
CTCTCCATCTGGCGTGTCAGTTTCGGAAACGCGAGGCCACACGGGCGCTT
TTGGCCCACGGGGCAAATGTCCAGACTGCGGACGAGAACGGATGCACGCC
TCTTCACTCGGCCGCTTCCAACGCAGATGCTCAAGTGGTGGAGCTTCTGC
TAAGATTCGGGGCAGACGCGGCGGCTACGTCCGCGGCTGGATCTACAGCT
GCGGAGGTTATCGCGCACAACTGTGATGGAGAGCAGGTTCAAGCCGAGAA
AATCGAGCAACTGGAAAGTCTCTTGATCTGCGCTGGACTAGATGACATCA
ACAACGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16697:1413..3820+

>mRNA_Ecto-sp13_S_contig16697.4798.1 ID=mRNA_Ecto-sp13_S_contig16697.4798.1|Name=mRNA_Ecto-sp13_S_contig16697.4798.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1560bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16697:1413..3820+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACACACCTTCAAGTGCACTGAGCAAACATAGAGGGCGAACCAGGAT
GATTGGCAGAGATCAGCAACATGCTTTCCTGAGGGGGTTTGAACCTGAGC
TCGTGAAACTGGTGTTCGATACTGCCACCGACGAGCAATTGGCGGCGTGG
CTGCGGCTGTCGTTGGAGCTTGCAGCAGATAACAACCACCTCGAGCTGAT
ATCAAGACTTGAAAACGCGGGAGCGGAGGGCAGCAGGTTTCATCTAGCCG
TGAGGCAAGGGAACGGGATACTGGTGACCGACACAATGAAGCGTGGGGAG
TCACCTGATGCCAGGGACGGAAATGGCGACGCTCCTCTTCATATCGCTGG
AGCGCGAGGGGACGTAGACCTGGTACGCTTGCTGCTGTCAAGCGGGGCTG
ACCCCAATCTGCCAGACAGGAAACAACGCACCCCTCTCCACGTCGCAGCC
AGGTATGGCCACGCGGAAACGGCGGGCGCTTTGCTTTCGGGAGGGGCCTG
GGTTAGCCCCTTTCTCGACTCGGAGAGCTGCTCTCCGCTAGAGCTAGCCG
TTCGCCACGGGCATGTGGACGTCGTAGGGGTCCTTGCCAAGCATGGAGCG
GACATGGATGGCGCAGCTTCTACTGGCCTGACACTTCTGCACCTTGCTGC
CAGTGAAGACATGGTGGACCTACTGCAGTGCCTCGTAGCCGCGGGGGCTA
GCCTGGAATCGCGGGACATGGACGGATCGACGGCCCTCCACATCGCCGCC
GAAAAAGGCGCGGCGGCCGCAGTTAAGGTCCTGTTAGCACTCGGAGCTCG
TCCCTGCGAATCCAACGGCGACAGTCTTTCTCCCCTCGGTTTAGCTTGCA
AGGGTGGCCACCTGCAGGCCGTCCTCGCGATTCTGGCGGCGAACCATCGC
AACCCCAGAATCGAAAAAGACGTCGTTAACCTTCGCTTCGGAAGGGAGCC
CTCGCCGCTCGAACTGGCTGCCTGCCACGGCCACGCACACGTCGTGAGGA
CCATGCTCCGCCACGGCGCGGACGTGGACAGCAAGGACTGTCCGTACCAG
CCGGCCCTACACCGAGCTGCTGATGGAGGCCACGTGGATGTGCTACAAGT
GTTGATAGATCACGGAGCGGATTTGGACGCTGTCGATGCTGACGCAGAAA
CAGCCCTCCATCACGCAGCAACATTTGATCAATCCGGCGCGGTCGACGTT
CTCGTGCGGGCTGGCGCCAACATCGAAGCGGTGGGGGAAGAGTTGTATAC
GCCTCTCCATCTGGCGTGTCAGTTTCGGAAACGCGAGGCCACACGGGCGC
TTTTGGCCCACGGGGCAAATGTCCAGACTGCGGACGAGAACGGATGCACG
CCTCTTCACTCGGCCGCTTCCAACGCAGATGCTCAAGTGGTGGAGCTTCT
GCTAAGATTCGGGGCAGACGCGGCGGCTACGTCCGCGGCTGGATCTACAG
CTGCGGAGGTTATCGCGCACAACTGTGATGGAGAGCAGGTTCAAGCCGAG
AAAATCGAGCAACTGGAAAGTCTCTTGATCTGCGCTGGACTAGATGACAT
CAACAACGAC
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