mRNA_Ecto-sp13_S_contig16693.4797.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16693.4797.1
Unique NamemRNA_Ecto-sp13_S_contig16693.4797.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16693.4797.1 vs. uniprot
Match: D8LN37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN37_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.130e-45
Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 2 
Query:  392 QTWRTMKRAESSTPGARRRARTQDTSTYQLGNGLVRGKVNREILQTVFGEALMSSIAAYNSPLEWDGLLLSDSDDEGEKEGQGQDDADLIGTDQTAGKLQ 691
            +TWR MKRAESSTPGARR ARTQDTSTYQ+G+GLVRGKVNREILQTVFGEAL +SIA YNSP EWDGLL SDSDDEGEK+GQ +DDADLIGTDQT  KLQ
Sbjct:   39 KTWRRMKRAESSTPGARRHARTQDTSTYQVGDGLVRGKVNREILQTVFGEALKTSIAVYNSPQEWDGLLFSDSDDEGEKKGQSKDDADLIGTDQTTWKLQ 138
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BLAST of mRNA_Ecto-sp13_S_contig16693.4797.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 8.020e-41
Identity = 90/141 (63.83%), Postives = 106/141 (75.18%), Query Frame = 2 
Query:  362 SDGLLFLMLLQTWRTMKRAESSTPGARRRARTQDTSTYQLGNGLVRGKVNREILQTVFGEALMSSIAAYNSPLEWDGLLLSDSDDEGEKEGQGQDDADLIGTDQTAGKLQVVVSGPKAFVVNVWELLSDMGVPSACTVLLD 784
            + G+  L+  +TWR ++R++SSTPGA RR   QD+STYQ+G+GLVRGKVNREIL+TVFGEAL + IAA N   E   LL SDSD   EKEGQ +DD DL  TDQT+ KLQVVVSGP  FV NVW+LL  MGVPS C VLLD
Sbjct: 1349 TTGVGKLLPKKTWRNLRRSDSSTPGAHRRPPIQDSSTYQVGDGLVRGKVNREILETVFGEALTTPIAADNRQREVKSLLRSDSDISDEKEGQDEDDGDLTSTDQTSRKLQVVVSGPSEFVANVWQLLDQMGVPSGCMVLLD 1489
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BLAST of mRNA_Ecto-sp13_S_contig16693.4797.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 4.760e-40
Identity = 90/135 (66.67%), Postives = 104/135 (77.04%), Query Frame = 2 
Query:  380 LMLLQTWRTMKRAESSTPGARRRARTQDTSTYQLGNGLVRGKVNREILQTVFGEALMSSIAAYNSPLEWDGLLLSDSDDEGEKEGQGQDDADLIGTDQTAGKLQVVVSGPKAFVVNVWELLSDMGVPSACTVLLD 784
            L+  +TWR  K  ES T   RRRA  QDTS YQ+G+GLVRG+VNREIL+TVFGEAL+SSIAAYN     + L  SDSD    KEG+G+DD DLIGTDQTAGKLQVVVSGP AFV NV +LL++MGVP+  TVLLD
Sbjct: 1356 LLTTRTWRNSKWNESPTTSGRRRAPMQDTSNYQVGDGLVRGRVNREILETVFGEALISSIAAYNRQRALNSLACSDSDVGDNKEGEGEDDRDLIGTDQTAGKLQVVVSGPTAFVANVKQLLTEMGVPAGSTVLLD 1490
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BLAST of mRNA_Ecto-sp13_S_contig16693.4797.1 vs. uniprot
Match: A0A6H5JTF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF1_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 7.090e-35
Identity = 90/181 (49.72%), Postives = 105/181 (58.01%), Query Frame = 2 
Query:  368 GLLFLMLLQTWRTMKRAESSTPGARRRARTQDTST------------------------------------------YQLGNGLVRGKVNREILQTVFGEALMSSIAAYNSPLEWDGLLLSDSDDEGEKEGQGQDDADLIGTDQTAGKLQVVVSGPKAFVVNVWELLSDMGVPSACTVLLD 784
            G+  L+  +TWR +K  ES T    RRA  QDTS                                           YQ+G+GLVRG+VNREIL+ VFGEAL+SSIAAYN     + L  SDSD   EKEGQG+DD +LIGTDQTAGKLQVVVSGP AFV NV +LL+ MGVP+  TVLLD
Sbjct:  159 GIGNLLPTRTWRNVKWKESPTTSDHRRAPMQDTSVSFRHVHEFGVATEIEFKMPEKDVFRVKAPHREKVGICVMGENYQVGDGLVRGRVNREILENVFGEALLSSIAAYNRQRALNSLACSDSDVGDEKEGQGEDDGELIGTDQTAGKLQVVVSGPTAFVANVKQLLTQMGVPAGSTVLLD 339
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BLAST of mRNA_Ecto-sp13_S_contig16693.4797.1 vs. uniprot
Match: A0A6H5J9F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9F0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.590e-12
Identity = 49/110 (44.55%), Postives = 60/110 (54.55%), Query Frame = 2 
Query:  479 LGNGLVRGKVNREILQTVFGEALMSSIAAY-------NSPLEWDGLLLSDSDDEGEKE-GQGQDDADLIGTDQTAGKLQVVVSGPKAFVVNVWELLSDMGVPSACTVLLD 784
            LG+GL+RGKV REILQ  FG AL++ +  +       +              DEG  E  +G    DL GTD   GKLQVVVSGP  FV  V  +L++MGVPS   V LD
Sbjct:    9 LGDGLLRGKVTREILQKAFGPALLALLEEFAKQEQSRHXXXXXXXXXXXXKRDEGSPEDARGITLDDLAGTDTEGGKLQVVVSGPNGFVFYVESILAEMGVPSEAIVFLD 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16693.4797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LN37_ECTSI1.130e-4585.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7J1_ECTSI8.020e-4163.83Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J2_ECTSI4.760e-4066.67Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JTF1_9PHAE7.090e-3549.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9F0_9PHAE2.590e-1244.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16693contigEcto-sp13_S_contig16693:16..2323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score168.7
Seed ortholog evalue2.6e-39
Seed eggNOG ortholog2880.D7G7J1
Model size1638
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.peroxidase activity
EggNOG OGsKOG2408@1,KOG2408@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_003360.1
Cds size561
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462875.3708527-UTR-Ecto-sp13_S_contig16693:15..2411681462875.3708527-UTR-Ecto-sp13_S_contig16693:15..241Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16693 16..241 +
1681462875.4059918-UTR-Ecto-sp13_S_contig16693:1472..23231681462875.4059918-UTR-Ecto-sp13_S_contig16693:1472..2323Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16693 1473..2323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462875.3808632-CDS-Ecto-sp13_S_contig16693:241..4841681462875.3808632-CDS-Ecto-sp13_S_contig16693:241..484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16693 242..484 +
1681462875.3892703-CDS-Ecto-sp13_S_contig16693:685..9071681462875.3892703-CDS-Ecto-sp13_S_contig16693:685..907Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16693 686..907 +
1681462875.3976254-CDS-Ecto-sp13_S_contig16693:1376..14721681462875.3976254-CDS-Ecto-sp13_S_contig16693:1376..1472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16693 1377..1472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16693.4797.1prot_Ecto-sp13_S_contig16693.4797.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16693 242..1472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16693.4797.1

>prot_Ecto-sp13_S_contig16693.4797.1 ID=prot_Ecto-sp13_S_contig16693.4797.1|Name=mRNA_Ecto-sp13_S_contig16693.4797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=187bp
MRAVCPKRIVGGSSLSLRRECWRYSHHLTCVSTICCIFMVVARSCSDGLL
FLMLLQTWRTMKRAESSTPGARRRARTQDTSTYQLGNGLVRGKVNREILQ
TVFGEALMSSIAAYNSPLEWDGLLLSDSDDEGEKEGQGQDDADLIGTDQT
AGKLQVVVSGPKAFVVNVWELLSDMGVPSACTVLLD*
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mRNA from alignment at Ecto-sp13_S_contig16693:16..2323+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16693.4797.1 ID=mRNA_Ecto-sp13_S_contig16693.4797.1|Name=mRNA_Ecto-sp13_S_contig16693.4797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2308bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16693:16..2323+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCCAGGGCATGGATATTTTCGCTGGATTCAACGAGGTATTCGCACTAG
CGCGGCCAAACGGATTCGGACCGGACGAAGCTAAGTAGGATGCCTCCCCC
GTGTCGGAATCCGTAACTTATGAGCACAGCCGGATTATTCTGCACGGGGC
ATTGTTGATCAGTGTGGGCGTACAATGCCTGCGCAGAGTAGAGAAGACTT
TGTCAAGTGTTTAATACGCAAAATGTATGCGTGCCGTGTGTCCTAAGCGA
ATTGTTGGCGGAAGTTCTCTAAGCCTGCGAAGAGAGTGCTGGCGATATTC
GCATCATTTAACCTGTGTTTCGACCATATGTTGCATTTTCATGGTTGTGG
CTCGTTCATGTTCCGATGGATTGTTGTTCCTCATGCTGCTGCAGACCTGG
CGCACCATGAAGCGGGCTGAGAGCTCAACGCCAGGAGCTCGTCGCCGTGC
ACGCACGCAGGACACCAGCGTAAGTCTGTATGCTTGTAAATGAGTGCAAA
GAAACAGGCGATAATAGAGGTTGCCATTTCGGAAAGGAAGAGGTCTGGTG
ATGTACTATGGGAATTGTGGGATCTGCATACCATTCGAACGTGCACCGGC
TTGTTCACAAAAGAAAATTAACCGCGCCCGTGCAACCAACTCGTTCGCTG
CTCTCGCTTGTCATTGCCAGACGTATCAATTGGGAAATGGCCTTGTTCGA
GGCAAGGTGAACCGGGAAATCCTCCAAACGGTCTTCGGCGAAGCCCTGAT
GAGCTCGATTGCGGCGTACAACAGCCCGCTAGAGTGGGACGGTCTTCTTC
TCAGTGACAGCGACGACGAGGGCGAGAAGGAAGGGCAAGGCCAGGATGAT
GCCGATCTCATTGGCACCGACCAGACCGCGGGAAAACTTCAGGTGACAAC
CAAGACCACGTTGCTAATTGTGAAAAGCAGATGGTTCAATGGTAACAGTC
CGCTTTCTCGAACCGATTGCTTGGTTGTGACGATATCGTTCAACTTGCTC
AATTTGCTCAGTTGCCCTTGGGTCTAAAGGCAGCAGCAGCAGCAGCAGTA
GCAGCAGCAGCAGCAGCCACACCGTCAACACTCACCAATGGTGTCTTGAG
GGAGGCGTATTGTCAACGCCCATTTCGATGGAAGAATTCCTGCTTCTGGT
CATGCTCACAGGAATGGTGATGGCGAGTTCGTGAAATCGCCTCTGACCAG
TAATTCTCCCGAGAGCAAACCGTCGCCCTCGCCGACAGTTGCTCGAAAGA
CACAGTCGTAGTCGGTCCATATTGAGAAGGCTGCGTCGAGCCTTGACAAG
TGGGTATACAGATACACATTCATTTTCGACCCCGTCAACAAATACCGTGC
TCCACTAGCAGGTGGTTGTTTCAGGGCCTAAGGCGTTCGTGGTCAACGTC
TGGGAGCTTCTTTCCGACATGGGGGTCCCCTCTGCCTGCACGGTGTTGCT
CGACTGATTCCGAGCGATGTTTCGATCGTCGACCGTTGATCCAGAATAGC
CGGAGATGATGTCCCACGCCATCATGTTGTGGGCGCGCACACCCTGCAAG
CACGCAAAGTGAAACAGCCACCATTTCTGGGAGTTGCCAACGATGCAAGA
ACGTAGCTGAGCAAGAAAGATAGGTCGACTCGCAAGTCGGCATGTCCCTG
GTGAACAGTCACTCCGCGAATGAGTTCCTCTTTTTCTTCGCTGCCCGAAC
CGTCGTTCGTGATGGCAATTGATGGTAATCATGACTTGTTTTGCACGCCT
GAATTCGATTCACCTTGTACAGACTATGTATGCGCAGCTACTGATTGAAG
AGGCTACGTGGGTATTGAGGGCGTGGTGGAACTTACGAGTTAGATATTTT
TTTTTGATACTCGTCACACTCGTTGTCACGTGAACTTAAATACTTTAAGT
TAAGAACAGGACATCAGAATCTCGAAGTGTGCGAGTATTCTATAGGATGG
TGTACAGGGGTAGGGATACGTGCATGGACATAGTGGTACGAAGTGCGTGA
TTAGCGTATAAATTTCTCGTTGCTATGTGTTGGTATGGTGCCGTCTGTTT
ACAGCTTTTGCTTTTGGTCATTCGTTCCTCCCCAAACCAACCCCCGATCC
TTGTCCCTCTGTGTCATCTCGCGTCCACCCCGGCTTCTGGCTATCCCGAT
ACCTGGCCTCACCTCTTTCACTCACCCTCACCAGCGAGGCATGCCTCCTC
GCCAAACCTAACCTTCCATGACCCTTCTCCAGCCATCCATCCCTCCTCTA
TCTCGGATCCTGGCTCGACCGAGCCCTTTCCTGCAACCCCTCGCCTTTTC
TAGCTGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16693:16..2323+

>mRNA_Ecto-sp13_S_contig16693.4797.1 ID=mRNA_Ecto-sp13_S_contig16693.4797.1|Name=mRNA_Ecto-sp13_S_contig16693.4797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16693:16..2323+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTGCCGTGTGTCCTAAGCGAATTGTTGGCGGAAGTTCTCTAAGCCT
GCGAAGAGAGTGCTGGCGATATTCGCATCATTTAACCTGTGTTTCGACCA
TATGTTGCATTTTCATGGTTGTGGCTCGTTCATGTTCCGATGGATTGTTG
TTCCTCATGCTGCTGCAGACCTGGCGCACCATGAAGCGGGCTGAGAGCTC
AACGCCAGGAGCTCGTCGCCGTGCACGCACGCAGGACACCAGCACGTATC
AATTGGGAAATGGCCTTGTTCGAGGCAAGGTGAACCGGGAAATCCTCCAA
ACGGTCTTCGGCGAAGCCCTGATGAGCTCGATTGCGGCGTACAACAGCCC
GCTAGAGTGGGACGGTCTTCTTCTCAGTGACAGCGACGACGAGGGCGAGA
AGGAAGGGCAAGGCCAGGATGATGCCGATCTCATTGGCACCGACCAGACC
GCGGGAAAACTTCAGGTGGTTGTTTCAGGGCCTAAGGCGTTCGTGGTCAA
CGTCTGGGAGCTTCTTTCCGACATGGGGGTCCCCTCTGCCTGCACGGTGT
TGCTCGACTGA
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