mRNA_Ecto-sp13_S_contig16690.4795.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16690.4795.1
Unique NamemRNA_Ecto-sp13_S_contig16690.4795.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16690.4795.1 vs. uniprot
Match: D7FQI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI3_ECTSI)

HSP 1 Score: 231 bits (590), Expect = 7.670e-68
Identity = 117/149 (78.52%), Postives = 122/149 (81.88%), Query Frame = 1
Query:    1 MRWLVLEAVVGAALASTSTGQEESLGCFGDDRSDRVLTAKWSSSSMTPAICAAYCRADSSLYTYYATQWGRECWCQGPDIDLRHGDGTCDHVCSGDSSIKCGGFDSFTLYEIESEGLPVAPLDDNYVGCFADDKEDRVLGSKMSSGSMT 447
            MR LVL+AVVGAAL  TSTGQEESLGCFGDDRSDRVLTA+WSSSSMTPA                       CWCQGPDIDLRHGDGTCD+VCSGDSSIKCGGFDSFTLYE+ESEGLPVAP+ DNYVGCFADDKEDRVLGSKMSSGSMT
Sbjct:    1 MRCLVLQAVVGAALVRTSTGQEESLGCFGDDRSDRVLTAEWSSSSMTPA-----------------------CWCQGPDIDLRHGDGTCDYVCSGDSSIKCGGFDSFTLYELESEGLPVAPMGDNYVGCFADDKEDRVLGSKMSSGSMT 126          
BLAST of mRNA_Ecto-sp13_S_contig16690.4795.1 vs. uniprot
Match: D7G975_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G975_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 2.880e-56
Identity = 87/132 (65.91%), Postives = 103/132 (78.03%), Query Frame = 1
Query:   52 STGQEESLGCFGDDRSDRVLTAKWSSSSMTPAICAAYCRADSSLYTYYATQWGRECWCQGPDIDLRHGDGTCDHVCSGDSSIKCGGFDSFTLYEIESEGLPVAPLDDNYVGCFADDKEDRVLGSKMSSGSMT 447
            +T Q  SLGC+ DD SDRVLTA WSS  MTP++CAAYC  +S+ Y YYA Q+G ECWCQ  DIDLRHG+ TCD+ CSGD+SI CGGF +FTLY++E   LP  P DDNYVGCFADD +DRVLG++ SS SMT
Sbjct:  274 TTAQPGSLGCYKDDPSDRVLTAMWSSPVMTPSVCAAYCHRESASYAYYAIQYGGECWCQDTDIDLRHGEATCDYACSGDASISCGGFYAFTLYDLEGANLPTPPADDNYVGCFADDLQDRVLGAETSSSSMT 405          
BLAST of mRNA_Ecto-sp13_S_contig16690.4795.1 vs. uniprot
Match: D8LQX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX7_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.120e-42
Identity = 74/125 (59.20%), Postives = 92/125 (73.60%), Query Frame = 1
Query:   73 LGCFGDDRSDRVLTAKWSSSSMTPAICAAYCRADSSLYTYYATQWGRECWCQGPDIDLRHGDGTCDHVCSGDSSIKCGGFDSFTLYEIESEGLPVAPLDDNYVGCFADDKEDRVLGSKMSSGSMT 447
            +GCF DD++DRVL AK SS+ MT   CA+YC  +S   TYYATQWG ECWC   ++ LRHGDGTCD  C+GD+   CGGFD+F L+E+     P++P +D+Y GCFADDK DRVLG KMSSG M+
Sbjct:   83 VGCFADDQNDRVLGAKSSSNEMTSEACASYCADESPGNTYYATQWGHECWCAA-EVHLRHGDGTCDMACTGDAGTTCGGFDAFDLFELG----PLSPSEDHYFGCFADDKSDRVLGDKMSSGDMS 202          
BLAST of mRNA_Ecto-sp13_S_contig16690.4795.1 vs. uniprot
Match: A0A6H5JLL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL4_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.950e-36
Identity = 66/137 (48.18%), Postives = 91/137 (66.42%), Query Frame = 1
Query:   37 ALASTSTGQEESLGCFGDDRSDRVLTAKWSSSSMTPAICAAYCRADSSLYTYYATQWGRECWCQGPDIDLRHGDGTCDHVCSGDSSIKCGGFDSFTLYEIESEGLPVAPLDDNYVGCFADDKEDRVLGSKMSSGSMT 447
            A+  T+   +  +GCF DDR DRVL  + SSS MT  +CAAYC  +S    +YATQ+G ECWC  P +DLR+G+GTCD+ C+G     CGGF++F L+E++       P +  Y+GCFADD+ DRVL  + SSG+M+
Sbjct:   69 AILPTAPTDDSYVGCFADDRQDRVLGVQTSSSEMTSEVCAAYCANESFGNKFYATQYGEECWC-APSVDLRYGEGTCDYACTGAVETTCGGFEAFDLFELDVVDRSSPPSEHYYLGCFADDQNDRVLEDETSSGNMS 204          
BLAST of mRNA_Ecto-sp13_S_contig16690.4795.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.600e-29
Identity = 60/121 (49.59%), Postives = 78/121 (64.46%), Query Frame = 1
Query:   73 LGCFGDDRSDRVLTAKWSSSSMTPAICAAYCRADSSLYTYYATQWGRECWCQ-GPDIDL-RHGDGTCDHVCSGDSSIKCGGFDSFTLYEIESEGLPVAPLDDNYVGCFADDKEDRVLGSKM 429
            +GCF D + DRV     +SS+MT A+C  YC    +  TY ATQ+G ECWC    +++  RH DG CDH C GD++  CGGFD+F LY+I     P  P  D YVGCFADD+EDR+LG ++
Sbjct:  436 VGCFADSKEDRVFEYMKTSSTMTTAVCLEYCLDRRA--TYMATQYGYECWCSVDAEVEYDRHSDGVCDHACGGDAADICGGFDAFDLYKITE---PTEPTGDEYVGCFADDREDRLLGDEI 551          
BLAST of mRNA_Ecto-sp13_S_contig16690.4795.1 vs. uniprot
Match: D8LED9_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED9_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.010e-26
Identity = 60/124 (48.39%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   73 LGCFGDDRSDRVLTAKWSSSSMTPAICAAYCRADSSLYTYYATQWGRECWCQGPDIDL---RHGDGTCDHVCSGDSSIKCGGFDSFTLYEIESEGLPVAPLDDNYVGCFADDKEDRVLGSKMSS 435
            +GCF D++ DRV     +S +MT A+C  YC    +  TY ATQ+G ECWC   D +    RH DG CDH C GD +  CGGFD+F LY+I     P  P  D YVGCFAD+ ED VLG ++ S
Sbjct:  403 VGCFADNKHDRVFEYMRTSFTMTTAVCLEYCLERRA--TYMATQYGIECWCS-VDAETEYDRHSDGVCDHACGGDEADYCGGFDAFDLYKITE---PREPTGDEYVGCFADNPEDWVLGGEIKS 520          
BLAST of mRNA_Ecto-sp13_S_contig16690.4795.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 5.560e-26
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 1
Query:   73 LGCFGDDRSDRVLTAKWSSSSMTPAICAAYCRADSSLYTYYATQWGRECWCQ-GPDIDL-RHGDGTCDHVCSGDSSIKCGGFDSFTLYEIESEGLPVAPLDDNYVGCFADDKEDRVLGSKM 429
            +GCF D + DRV     +S +MT A+C  YC    +  T+ ATQ+G ECWC    +I+  RH DG CD  C G+++  CGGFD+F LY+I     P  P  D YVGCFADD+EDR+LG ++
Sbjct:   14 VGCFADSKDDRVFEYMKTSPTMTTAVCLEYCLDRRA--TFMATQFGIECWCSVDAEIEYDRHSDGVCDCECGGEATDICGGFDAFDLYKITE---PTEPTGDEYVGCFADDREDRLLGDEI 129          
BLAST of mRNA_Ecto-sp13_S_contig16690.4795.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 4.210e-23
Identity = 63/135 (46.67%), Postives = 73/135 (54.07%), Query Frame = 1
Query:   58 GQEESLGCFGDDRSDRVLTAKWS-SSSMTPAICAAYCRADSSLYTYYATQWGRECWCQGP---DIDLRHGD-GTCDHVCSGDSSIKCGGFDSFTLYEIESEGLPVAPLDDNYVGCFADDKEDRVLGSKMSSGSMT 447
            G  E +GCF D +SDRVL      S  MT  +C   C    + Y   ATQWG ECWC      D D RHGD G CD+ C GD S  CGG  SF LY +       AP D+ YVGC+ D+K DRVL   +SS  MT
Sbjct: 1143 GAYEHVGCFQDSQSDRVLQRSGLISGDMTAELCYETCSTKGAAYM--ATQWGVECWCSRDGSLDYD-RHGDTGVCDYPCRGDESETCGGVHSFNLYRLS---WAPAPEDEEYVGCYTDNKGDRVLSDMISSDDMT 1271          
BLAST of mRNA_Ecto-sp13_S_contig16690.4795.1 vs. uniprot
Match: D7FTD7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.480e-19
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 1
Query:   73 LGCFGDDRSDRVLT-AKWSSSSMTPAICAAYCRADSSLYTYYATQWGRECWCQGPDIDLR-HGDGT-CDHVCSGDSSIKCGGFDSFTLYEIESEGLPVAPLDDNYVGCFADDKEDRVLGSKMSSGS 441
            LGC+GDDR DR++     S  SMT  +C   C       TY+ATQ+GRECWC   D+D   HG+ T C + C+GD+   CGGFD+  +Y    E   ++     +VGC+ D+   R++   ++  S
Sbjct:  207 LGCYGDDREDRIMDDLALSDYSMTTELCELTCLGS----TYFATQYGRECWCGSADMDYALHGESTDCTYACAGDADQTCGGFDAANVYSYTDESTAISA----FVGCYQDESGSRIMELALTDSS 324          
BLAST of mRNA_Ecto-sp13_S_contig16690.4795.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 3.290e-19
Identity = 55/111 (49.55%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  127 SSSMTPAICAAYCRADSSLYTYYATQWGRECWCQGP---DIDLRHGD-GTCDHVCSGDSSIKCGGFDSFTLYEIESEGLPVAPLDDNYVGCFADDKEDRVLGSKMSSGSMT 447
            SS MT  +C   C A  + Y   ATQWG ECWC      D D RHGD G CD+ C GD S  CGG  SF LY +       AP D+ YVGC+AD K DRVL   +SS +MT
Sbjct:  821 SSDMTAELCYETCSAKGAAYM--ATQWGVECWCSRDGSLDYD-RHGDTGVCDYPCIGDESETCGGVHSFNLYRLS---WAPAPEDEEYVGCYADSKGDRVLFDMISSDNMT 925          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16690.4795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQI3_ECTSI7.670e-6878.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G975_ECTSI2.880e-5665.91Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LQX7_ECTSI1.120e-4259.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLL4_9PHAE1.950e-3648.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LED7_ECTSI2.600e-2949.59EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LED9_ECTSI1.010e-2648.39EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JMV6_9PHAE5.560e-2647.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRE8_ECTSI4.210e-2346.67EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FTD7_ECTSI1.480e-1938.10WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JJ37_9PHAE3.290e-1949.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16690contigEcto-sp13_S_contig16690:1320..2745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score234.6
Seed ortholog evalue3.1e-59
Seed eggNOG ortholog2880.D7FQI3
Model size447
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Ec32 ortholog descriptionCarbohydrate-binding WSC
Ec32 orthologEc-00_008820.1
EC1.1.3.9,1.2.3.15,3.2.1.59
Cds size447
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462875.2317355-CDS-Ecto-sp13_S_contig16690:1319..15501681462875.2317355-CDS-Ecto-sp13_S_contig16690:1319..1550Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16690 1320..1550 -
1681462875.2440162-CDS-Ecto-sp13_S_contig16690:1728..17971681462875.2440162-CDS-Ecto-sp13_S_contig16690:1728..1797Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16690 1729..1797 -
1681462875.2555697-CDS-Ecto-sp13_S_contig16690:2132..22211681462875.2555697-CDS-Ecto-sp13_S_contig16690:2132..2221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16690 2133..2221 -
1681462875.2714636-CDS-Ecto-sp13_S_contig16690:2687..27451681462875.2714636-CDS-Ecto-sp13_S_contig16690:2687..2745Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16690 2688..2745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16690.4795.1prot_Ecto-sp13_S_contig16690.4795.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16690 1320..2745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16690.4795.1

>prot_Ecto-sp13_S_contig16690.4795.1 ID=prot_Ecto-sp13_S_contig16690.4795.1|Name=mRNA_Ecto-sp13_S_contig16690.4795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
MRWLVLEAVVGAALASTSTGQEESLGCFGDDRSDRVLTAKWSSSSMTPAI
CAAYCRADSSLYTYYATQWGRECWCQGPDIDLRHGDGTCDHVCSGDSSIK
CGGFDSFTLYEIESEGLPVAPLDDNYVGCFADDKEDRVLGSKMSSGSMT
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mRNA from alignment at Ecto-sp13_S_contig16690:1320..2745-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16690.4795.1 ID=mRNA_Ecto-sp13_S_contig16690.4795.1|Name=mRNA_Ecto-sp13_S_contig16690.4795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16690:1320..2745- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCTGGTTGGTTCTCGAGGCCGTGGTCGGTGCTGCACTCGCGAGCAC ATCGACTGGTGAGTAGTACCCTACCATGTACCAGGCAGGTTCCCCAGGGA GGTAAGCCGCTAAAACTTAGAGTACCGACAGTGTTTCGCGGCGAGGCTCT CGCCAAGTCCTGTTCGCTCTTTGTCAACGATGCTTGTTGCTATTGTCATC GACGTCCCTCGTGGACTTCGGTTAAAGTCTCAACACGCTTCTTCCCGTGG TTTGACCGTCGTATTGTCGAGCTCGCAACCCGGCGGCTGTGATTCGGTGA GCCATACAGGCCTTCATAAACGATGACTCCGAGCAAATGGAGAGACAAAC AAGATGAAGGAAATGTTTTTATCAACCACGGATCGCGTTCAAATCATGTT GCTTTATCCTGTACACGTTGCTTTATCCCGTACTCCCGTTACTCTCACCA AGCGTCAACCCTACCCCTCTCGGGCACGCCCGCTGTTCGGCTCATGAACA CGTTGCCACATTTACGTTCACCAGGTCAAGAGGAGTCGCTAGGGTGTTTC GGAGACGACCGGTCCGACCGAGTGCTGACGGCGAAATGGTCGAGCAGCTC CATGACGCCAGCGGTGAGTATGTGCTGTGCTGGTAAGTTTAGAGGGGGGT CGCCACAGGACGTTCAGCAGCGGAACCCCTCACCGTCACACAACTCTGAG GCTACAAGGACTTAACTGGAGTTTGTACCTTCTCCGCATGTTCTACTGAT CCGCCTCCTCCGCCGTGCATTCGATGGAACAGCTCTAAAGCTGCATGGAG CATGCCAATAAATCCGGATCGATCGTCTGGGGTTAACCACTTGGGGTTGC GAAAATGTCTACTTTGATGTAATTCTCGACTGTTGGCGGTGGTTTGTTCG TGGCTGTTCTACACTTGCTGTGTCCCTGTTTGTTTCTGCTGCTTTCAGAT CTGTGCTGCCTACTGCCGTGCGGACTCCTCACTCTACACGTACTACGCCA CACAATGGGGTCGCGAGGTAGGTGTCCAGGGCTTCGCGAGTGCCGCATCG TCACCTTGACCTATATCTGTTTCGGTTGGGTCTGGCCATGACCACTGTTA ACCTATTCAGTTCATGGTTTTGCGTGAATATCCGCTCCGTCAACCTCGGG CACAACTGACCGACCTTCTCAAGCTCCTCCCTCTTTTTTACGCAGTGCTG GTGTCAAGGACCCGACATTGACCTCAGGCATGGCGATGGCACATGCGACC ACGTCTGTAGTGGTGATTCTTCGATCAAGTGCGGCGGCTTTGATTCCTTC ACTCTGTATGAGATTGAGTCAGAGGGCCTGCCGGTTGCTCCTTTGGACGA CAACTACGTCGGTTGCTTTGCAGACGACAAGGAGGACCGCGTTCTCGGTT CCAAGATGTCATCCGGCTCGATGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16690:1320..2745-

>mRNA_Ecto-sp13_S_contig16690.4795.1 ID=mRNA_Ecto-sp13_S_contig16690.4795.1|Name=mRNA_Ecto-sp13_S_contig16690.4795.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16690:1320..2745- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCTGGTTGGTTCTCGAGGCCGTGGTCGGTGCTGCACTCGCGAGCAC
ATCGACTGGTCAAGAGGAGTCGCTAGGGTGTTTCGGAGACGACCGGTCCG
ACCGAGTGCTGACGGCGAAATGGTCGAGCAGCTCCATGACGCCAGCGATC
TGTGCTGCCTACTGCCGTGCGGACTCCTCACTCTACACGTACTACGCCAC
ACAATGGGGTCGCGAGTGCTGGTGTCAAGGACCCGACATTGACCTCAGGC
ATGGCGATGGCACATGCGACCACGTCTGTAGTGGTGATTCTTCGATCAAG
TGCGGCGGCTTTGATTCCTTCACTCTGTATGAGATTGAGTCAGAGGGCCT
GCCGGTTGCTCCTTTGGACGACAACTACGTCGGTTGCTTTGCAGACGACA
AGGAGGACCGCGTTCTCGGTTCCAAGATGTCATCCGGCTCGATGACG
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