mRNA_Ecto-sp13_S_contig16689.4793.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16689.4793.1 vs. uniprot
Match: A0A6H5JPA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA7_9PHAE) HSP 1 Score: 494 bits (1273), Expect = 7.770e-168 Identity = 284/309 (91.91%), Postives = 289/309 (93.53%), Query Frame = 1
Query: 1 VMVRGDPTAVRMGAVAGPEAATSRPALLVTIGPQCAGKTNLLRALAAKSEAARXXXXXXXXXXXXXXXXXXXXX------VSSVVDITIDDHPSVYHKIPTALLLGGCPRGSPEDLLLARRPLSDRLGDPGCVETRLLAFRLEGHISAEEFAGRLGECRGQVSPAAIAALCWAVESAVSDNVRISTPTVHIFVRENLFPDAISCSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFACTGRYVETAAIENALARVGKLYASTAGGDPARLALAA 909
+MVRG PTAVRMGAVAGPEAA SRPALLVTIGPQCAGKT+LLRALAAKSEAA XXXXXXXXXXXXXXXXXXXXX V SV D+TIDDHPSVYHKIPTALLLGGC RG PEDLLLARR LSDRLGDPGCVETRL+AFRLEGHISAEEFAGRLGECRGQ SPAAIAALCWAVESAVSDN RISTPTV +FVRENLFPDAIS SQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELP LSLEELSRRNVCRFACTGRYVETAAIENALARV KLYASTAGGDPARLALAA
Sbjct: 260 MMVRGGPTAVRMGAVAGPEAAASRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRSVADVTIDDHPSVYHKIPTALLLGGCARGCPEDLLLARRSLSDRLGDPGCVETRLVAFRLEGHISAEEFAGRLGECRGQASPAAIAALCWAVESAVSDNGRISTPTVDVFVRENLFPDAISSSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPILSLEELSRRNVCRFACTGRYVETAAIENALARVDKLYASTAGGDPARLALAA 568
BLAST of mRNA_Ecto-sp13_S_contig16689.4793.1 vs. uniprot
Match: D8LAX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX8_ECTSI) HSP 1 Score: 440 bits (1131), Expect = 1.870e-150 Identity = 238/292 (81.51%), Postives = 244/292 (83.56%), Query Frame = 1
Query: 34 MGAVAGPEAATSRPALLVTIGPQCAGKTNLLRALAAKSEAARXXXXXXXXXXXXXXXXXXXXXVSSVVDITIDDHPSVYHKIPTALLLGGCPRGSPEDLLLARRPLSDRLGDPGCVETRLLAFRLEGHISAEEFAGRLGECRGQVSPAAIAALCWAVESAVSDNVRISTPTVHIFVRENLFPDAISCSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFACTGRYVETAAIENALARVGKLYASTAGGDPARLALAA 909
MGAVAG EAAT+RPALLVTIGPQCAGKT+LLRALAAKSE VYHKIPTALLLGGC RGSPEDLLLA+RPLSDRLGDPGCVETRL+ FRLEGHISAEEFAGRLGECRGQ SPAAIAALC AVESAVSDNVRISTPTV +FVRENLFPDAIS SQERLAAAA DE+GLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFA TGRYVETAAIENALARV KLYASTAGGDPARLALAA
Sbjct: 1 MGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSE--------------------------------------VYHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGGDPARLALAA 254
BLAST of mRNA_Ecto-sp13_S_contig16689.4793.1 vs. uniprot
Match: A0A835Z5Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q0_9STRA) HSP 1 Score: 191 bits (486), Expect = 5.940e-53 Identity = 121/280 (43.21%), Postives = 154/280 (55.00%), Query Frame = 1
Query: 79 LLVTIGPQCAGKTNLLRALAAKSEAARXXXXXXXXXXXXXXXXXXXXXVSSVVDITIDDHPSVYHKIPTALLLGGCPRGSPEDLLLARRPLSDRLGDPGCVETRLLAFRLEGHISAEEFAGR-LGECRGQVSPAAIAALCW--AVESAVSDNVRISTPTVHIFVRENLFPDAISCSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFACTGRYVETAAIENALARVGKLYASTAGGDPARLALAA 909
LL+TIGPQCAGKT L AL AR + D+ IDDHP VY+K+PTA L +D+LL + +S+R+ D V L+A RLEG ++A+EF + L P W AVE+AV+ +R+ TPTV +FV +P + S RL G VAWGNTNT+++DYR ALE A+ RPVR+LRWGHELP + L +L R++ RFA TGRYV A+ AL RV LYA T GGDPA L AA
Sbjct: 94 LLITIGPQCAGKTTTLLALGQSLGGAR------------------------ICDVAIDDHPDVYYKLPTACALDPDSITPQQDVLLFDKTVSERMADYTVVGKCLVAKRLEGLLTADEFREQWLSSVEFYPYPDGEVEELWIAAVEAAVAAGLRMETPTVDLFVPNGHYPRGVRDSNRRLRQECSRHPGPVAWGNTNTKSKDYREALECAQAVNRPVRYLRWGHELPAVPLRDLFARDLRRFAATGRYVPPQAVAAALRRVEHLYARTDGGDPALLTAAA 349
BLAST of mRNA_Ecto-sp13_S_contig16689.4793.1 vs. uniprot
Match: A0A835YGB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGB3_9STRA) HSP 1 Score: 167 bits (424), Expect = 1.190e-44 Identity = 112/284 (39.44%), Postives = 149/284 (52.46%), Query Frame = 1
Query: 79 LLVTIGPQCAGKTNLLRALAAKSEAARXXXXXXXXXXXXXXXXXXXXXVSSVVDITIDDHPSVYHKIPTALLLGGCPRGSP-EDLLLARRPLSDRLGDPGCVETRLLAFRLEGHISAEEFAGRLGECRGQVSPAAIA------ALCWAVESAVSDNVRISTPTVHIFVRENLFPDAISCSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFACTGRYVETAAIENALARVGKLYASTAGGDPARLALAA 909
LL+TIGPQCAGKT LR + V D+ ID+HP VY+++PTA +L P + ED+ + R LSDRL G L+A RLEG +S+ +F E + P +A +VE+AV++ VR+ PTV +F+ E P + L G VAWGNTNT+ARDY AL A+ RPV F+R+GHE+P +S+ EL RN+ RFA TGR++ + A RV LYA T GG+PARLA AA
Sbjct: 71 LLITIGPQCAGKTTTLRKMG-------------------------------VFDVAIDEHPDVYYELPTAYILD--PTSTTLEDVTIFGRRLSDRLQYTGVYANMLVAQRLEGLLSSAKFEA---EWKAIAGPYLLADRDVDRIFLESVEAAVAEGVRLYAPTVDLFLPEGHAPKGMREHSVVLRYECHRRRGAVAWGNTNTRARDYAAALATAQECTRPVHFVRYGHEIPAISIRELFGRNLRRFAATGRFIPPQTMWAARQRVKHLYARTGGGEPARLAAAA 318
BLAST of mRNA_Ecto-sp13_S_contig16689.4793.1 vs. uniprot
Match: W7TBP9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBP9_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 8.490e-15 Identity = 87/288 (30.21%), Postives = 116/288 (40.28%), Query Frame = 1
Query: 73 PALLVTIGPQCAGKTNLLRALAAKSEAARXXXXXXXXXXXXXXXXXXXXXVSSVVDITIDDHPSVYHKIPTALLLGG-------CPRGSPEDLLLARRPLSDRLGDPGCVETRLLAFRLEGHISAEEFAGRL---------------------GECRGQ--------VSPAAIAALCWAVESAVSDNVRISTPTV---HIFVRENLFPDAISCSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHEL-PFLSLEELSRRNVCRFACTGRYV 816
P+LL+T+GPQCAGKT LL+ L + +VD+ IDD +Y +P L L G D L+ R LS R D VE+RL+ L G E L C + + A A A + V S P +F+ + L P AI S +RL + G VAWGNTN++ARD++ A+ A + GR V F+RWG EL + EEL RNV R G+YV
Sbjct: 87 PSLLITVGPQCAGKTTLLKHLNESRPS----------------------FAPPLVDVAIDDQAGLYVPLPMPLFLEGGRXXXXXXXXXXSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSXXXXXXXXXXXXXXXXXXCPSEEDEWITLLLHALAKARATIATTTKVDTVATWSPPAASHYQLFLPD-LLPQAIRRSYQRLTRSLCGP-GPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYV 350
BLAST of mRNA_Ecto-sp13_S_contig16689.4793.1 vs. uniprot
Match: A0A4D9D5F8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5F8_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 3.940e-11 Identity = 49/105 (46.67%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 568 NLFPDAISCSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHEL-PFLSLEELSRRNVCRFACTGRYVETAAIENALARVGKLYASTAG 879
+L P AI S +RL+ + G VAWGNTN++ARD++ A+ A + GR VRFLRWG EL + EEL RNV R G+YV AI AL R L AG
Sbjct: 102 DLLPQAIRRSYQRLSRSLCGP-GPVAWGNTNSKARDFKEAILLAGKAGRRVRFLRWGKELGKEVGKEELILRNVWRAYREGKYVPVRAISAALERTKVLLDGRAG 205
BLAST of mRNA_Ecto-sp13_S_contig16689.4793.1 vs. uniprot
Match: B8C738_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C738_THAPS) HSP 1 Score: 70.9 bits (172), Expect = 5.230e-10 Identity = 72/283 (25.44%), Postives = 118/283 (41.70%), Query Frame = 1
Query: 52 PEAATSRPALLVTIGPQCAGKTNLLRALAAKSEAARXXXXXXXXXXXXXXXXXXXXXVSSVVDITIDDHPSVYHKIPTALLLGGCP----RGSPEDLLLARRPLSDRLGDPGCVETRLLAFRLEGHISAEEFAGRLG--ECRGQVSPAA---------IAALCWAVESAVSDNV----------------RISTPT-VHIFVRENLF---------------PDAISCSQ-ERLA------AAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWG 738
P + S+ + +T+GPQC GKT +L+ L + +DITIDD VY +P L L + S + + + + DR+ DP E +L+ RL G ++A +F RL + GQ +A +A L AVE + N +++ P + +FV E++F P + + + +RL ++ D +AWGNTNT+ R++ A+E A +GRPV F+ +G
Sbjct: 94 PPSTQSKGPIYITVGPQCCGKTTILKRLFGT---------------VFHNNEEEGGASTGGLDITIDDQELVYFPVPIQLFLPDAALPSEQRSTSNQSILGKSVRDRVVDPSNNELKLVIQRLAGKLTAGDFIERLNNPQKNGQQQQSAPLQKNQKAVVADLVSAVEEVIKINTDPKGETTENSMFFAATKLTLPKQIDLFVVESIFRPRPLELMRNTKNNTPSSSALDEAQRLIKSISTDSSVHDSAAPLAWGNTNTRPREFLSAMEAATLSGRPVEFIVFG 361 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16689.4793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16689.4793.1 >prot_Ecto-sp13_S_contig16689.4793.1 ID=prot_Ecto-sp13_S_contig16689.4793.1|Name=mRNA_Ecto-sp13_S_contig16689.4793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=302bp MVRGDPTAVRMGAVAGPEAATSRPALLVTIGPQCAGKTNLLRALAAKSEAback to top mRNA from alignment at Ecto-sp13_S_contig16689:1060..3854+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16689.4793.1 ID=mRNA_Ecto-sp13_S_contig16689.4793.1|Name=mRNA_Ecto-sp13_S_contig16689.4793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2795bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16689:1060..3854+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16689:1060..3854+ >mRNA_Ecto-sp13_S_contig16689.4793.1 ID=mRNA_Ecto-sp13_S_contig16689.4793.1|Name=mRNA_Ecto-sp13_S_contig16689.4793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16689:1060..3854+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |