mRNA_Ecto-sp13_S_contig16686.4791.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16686.4791.1
Unique NamemRNA_Ecto-sp13_S_contig16686.4791.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16686.4791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16686contigEcto-sp13_S_contig16686:808..1299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size493
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462874.871177-UTR-Ecto-sp13_S_contig16686:807..9721681462874.871177-UTR-Ecto-sp13_S_contig16686:807..972Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16686 808..972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462874.8797338-CDS-Ecto-sp13_S_contig16686:972..12991681462874.8797338-CDS-Ecto-sp13_S_contig16686:972..1299Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16686 973..1299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16686.4791.1prot_Ecto-sp13_S_contig16686.4791.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16686 973..1299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16686.4791.1

>prot_Ecto-sp13_S_contig16686.4791.1 ID=prot_Ecto-sp13_S_contig16686.4791.1|Name=mRNA_Ecto-sp13_S_contig16686.4791.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MGWSKHLPNDNSSNEAGQILPAIGWLNLFPNDNCCREAGHKVPATGWSNE
DPNDSRCREGGHIIPPTGMSKQSPRDSRCKEPGHTTSIIGWLKALPNDRF
RIEAGHTTS
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mRNA from alignment at Ecto-sp13_S_contig16686:808..1299+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16686.4791.1 ID=mRNA_Ecto-sp13_S_contig16686.4791.1|Name=mRNA_Ecto-sp13_S_contig16686.4791.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16686:808..1299+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGGGTAACCTCAAACGTACCACCCACAACCCAGCCCTCATTCTTCAC
TCCTATCTCTCCCATTTAACTACAAGAGTGCTACTCCAACTCTTTGCGCT
GCCACAGCAACTCCTCCTTTGCTCTTGTCACAACCCGAAGGGAGGCCGGC
CACTCGACCAAGGCCATGGGTTGGTCGAAACATCTCCCGAACGATAACTC
TTCCAACGAGGCCGGCCAAATACTTCCGGCTATCGGGTGGTTGAACCTTT
TCCCAAATGACAACTGTTGCAGGGAGGCCGGCCACAAGGTCCCGGCGACT
GGCTGGTCAAACGAAGACCCGAACGATAGCCGCTGTAGAGAGGGCGGCCA
CATAATTCCGCCGACTGGCATGTCAAAACAGTCTCCAAGAGATAGCCGCT
GCAAAGAACCCGGCCACACCACATCCATTATTGGCTGGTTGAAAGCACTC
CCGAACGACAGGTTCCGCATCGAGGCTGGCCACACGACTTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16686:808..1299+

>mRNA_Ecto-sp13_S_contig16686.4791.1 ID=mRNA_Ecto-sp13_S_contig16686.4791.1|Name=mRNA_Ecto-sp13_S_contig16686.4791.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16686:808..1299+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTTGGTCGAAACATCTCCCGAACGATAACTCTTCCAACGAGGCCGG
CCAAATACTTCCGGCTATCGGGTGGTTGAACCTTTTCCCAAATGACAACT
GTTGCAGGGAGGCCGGCCACAAGGTCCCGGCGACTGGCTGGTCAAACGAA
GACCCGAACGATAGCCGCTGTAGAGAGGGCGGCCACATAATTCCGCCGAC
TGGCATGTCAAAACAGTCTCCAAGAGATAGCCGCTGCAAAGAACCCGGCC
ACACCACATCCATTATTGGCTGGTTGAAAGCACTCCCGAACGACAGGTTC
CGCATCGAGGCTGGCCACACGACTTCC
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