mRNA_Ecto-sp13_S_contig16681.4790.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16681.4790.1
Unique NamemRNA_Ecto-sp13_S_contig16681.4790.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16681.4790.1 vs. uniprot
Match: A0A6H5LAU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU0_9PHAE)

HSP 1 Score: 486 bits (1250), Expect = 1.010e-171
Identity = 258/265 (97.36%), Postives = 259/265 (97.74%), Query Frame = 1
Query:   76 RARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETISAWRTAAAAAPTAVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQQ 870
            RARLLGDTTFMTKLAIEMVTGT AQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLET SAW TAAAAAP  V G+GAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQQ
Sbjct:   39 RARLLGDTTFMTKLAIEMVTGTGAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWTTAAAAAPPVVAGKGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQQ 303          
BLAST of mRNA_Ecto-sp13_S_contig16681.4790.1 vs. uniprot
Match: D7FZL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL4_ECTSI)

HSP 1 Score: 481 bits (1238), Expect = 5.590e-168
Identity = 258/264 (97.73%), Postives = 259/264 (98.11%), Query Frame = 1
Query:   76 RARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETISAWRTAAAAAPTAVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ 867
            RARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGK+FMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLET SAWRTAAAAAP  VV RGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVD LRYVGVQ
Sbjct:  163 RARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKKFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVERGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDGLRYVGVQ 426          
BLAST of mRNA_Ecto-sp13_S_contig16681.4790.1 vs. uniprot
Match: A0A836CF64_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF64_9STRA)

HSP 1 Score: 184 bits (467), Expect = 5.690e-54
Identity = 115/242 (47.52%), Postives = 144/242 (59.50%), Query Frame = 1
Query:  148 QFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAG--GTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETISAWRTAAAAAPTAVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ 867
            Q LAEY+KR  +F +E DFV AD LT  FANFAAVW SCPT+        +AA  G   +L +F+ +CPSNAFQ+VVA    +  +S+A+RGAAL+ PMP+LFVIGFGA  AGYGL + +  I       A  PT V                        E+A     P+  S LA+G FLAV +NLRYQ IAG +EQR  D  LA  P +S+  S  +R+ANLY+G+  IVDWLR VGVQ
Sbjct:    2 QVLAEYEKRRDKFFKEFDFVLADILTSCFANFAAVWASCPTMRPAIAGSADAASKGMFASLGRFMNSCPSNAFQRVVAP---ATHYSLAQRGAALIKPMPQLFVIGFGACAAGYGLTSLMSHIRL-----ALDPTMVKN---------------------TEDA-----PIFKSSLAIGAFLAVSSNLRYQIIAGGIEQRFLDVALASKPAVSNACSFVLRTANLYLGASMIVDWLRIVGVQ 209          
BLAST of mRNA_Ecto-sp13_S_contig16681.4790.1 vs. uniprot
Match: A0A7S1EMP3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EMP3_HEMAN)

HSP 1 Score: 152 bits (384), Expect = 8.930e-41
Identity = 101/265 (38.11%), Postives = 145/265 (54.72%), Query Frame = 1
Query:   76 RARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETISAWRTAAAAAPTAVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQQ 870
            R RLL D TF+ K+AIE+V G A Q +AEYQ RGK F++E DFV A   TC+ ANF  ++L+ PT+  KA     +A A     KF  +CP NAFQ V+ +G  + +F   +R   +  PMP+LF IG  A   GY   A    +  +                 KS+ G               A    + +   G+AVG ++A+ +NLRYQF+AG +EQR+ DT+LA    L +  ST +R+AN Y+GS  +V +LR++G+Q+
Sbjct:   57 RDRLLADNTFLNKVAIEVVIGGAMQLIAEYQNRGKAFVKEFDFVIAGIATCVLANFFTLYLAAPTLVPKAASLTTSAVA-----KFFNSCPDNAFQTVL-KGMPAPSF--VQRCGGIFKPMPELFFIGLVAASGGYLYTACNVAVRKFFNP--------------KSQGG---------------ADLDALQIGKIGVAVGAYVAISSNLRYQFMAGVLEQRVLDTLLAGQVSLRTAGSTVIRTANTYLGSYLLVAYLRWLGLQK 284          
BLAST of mRNA_Ecto-sp13_S_contig16681.4790.1 vs. uniprot
Match: A0A7S3XYV0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYV0_HETAK)

HSP 1 Score: 152 bits (384), Expect = 9.870e-41
Identity = 96/266 (36.09%), Postives = 141/266 (53.01%), Query Frame = 1
Query:   76 RARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETISAWRTAAAAAPTAVVGRGAAKSKRGLKRAQKARAAALAEEAQKPP---VPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGV 864
            R RL+ D +F+TK A+E+  G   Q  AE ++RG + +Q+LDFV AD LTC+ ANF AVWL+ PT+A  A      A AG  +++F  +CP NAFQKV         F+VA+R   L+   P+LF++GF A++AG+G   GL  +                             +K   A+  EE    P   V VL   L +G +L V TN+RYQ +AG +E+R+   + A    L++  S   R+ N +VGS  +V  L++ G+
Sbjct:   64 RNRLMNDPSFLTKCAMEIGIGGVCQLAAEVKERGDKLLQQLDFVVADVLTCVIANFMAVWLAAPTLAALA---PPPAAAGNAVKRFFDSCPGNAFQKVTPGRA---PFTVAQRCGTLVGAFPQLFLVGFAASVAGFGFTLGLSKLR----------------------------EKLNPASAEEEPLGGPAKEVQVLKPALVIGAYLGVSTNVRYQLVAGLLEERLLGALFANQQFLNTAGSFIFRTGNTFVGSSQMVMTLKWTGL 295          
BLAST of mRNA_Ecto-sp13_S_contig16681.4790.1 vs. uniprot
Match: A0A251VLI5_HELAN (Uncharacterized protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251VLI5_HELAN)

HSP 1 Score: 147 bits (372), Expect = 3.170e-38
Identity = 99/265 (37.36%), Postives = 144/265 (54.34%), Query Frame = 1
Query:   76 RARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETISAWRTAAAAAPTAVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQQ 870
            + RLL D  FMTK+AIE   G   +  AE +KR + F +ELDFV AD +  L A+F  VWL  PTV+++A      A + G + KF A CP NAFQ  VA  G S  +S+ +R  A+     KLF +G GA+L G G+   L                               A+KA     A EA +  +P+L + +A G+++AV +NLRYQ IAG +EQR+ + +L ++  + S    AVR+ N ++GSL  VD+ R++G+Q+
Sbjct:  146 KERLLADDLFMTKVAIECGVGIFTKSAAELEKRRENFSKELDFVTADVIMALIADFMLVWLPAPTVSLRA----PVAVSAGRVAKFFAGCPDNAFQ--VALAGTS--YSLLQRIGAIARNGAKLFGVGTGASLIGTGITNLLIN-----------------------------ARKAVDKTFAAEADEEDIPILSTSVAYGVYMAVSSNLRYQVIAGVIEQRMLEPLLHQHKLILSAICFAVRTGNTFLGSLMWVDYARWIGIQR 373          
BLAST of mRNA_Ecto-sp13_S_contig16681.4790.1 vs. uniprot
Match: A0A388L9G5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L9G5_CHABU)

HSP 1 Score: 147 bits (370), Expect = 4.900e-37
Identity = 101/265 (38.11%), Postives = 144/265 (54.34%), Query Frame = 1
Query:   76 RARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETISAWRTAAAAAPTAVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQQ 870
            R RLL D  F++K+  E   G   +  AEY++R  RFM+ELDFV AD +  + A+F  VWL  PTVA++A      AK   +  KF   CP NAFQ  VA  G   T+++ +R  A++    KLF +G GA+L G     GL  +                          +R     +AA  E+A+   VP+L + +A G ++AV +NLRYQ +AG VEQRI + +L +     SL+S AVR+AN ++GSL  VD+  +VGVQ+
Sbjct:  265 RERLLADDLFVSKVLFECGIGVCTKTAAEYERRRDRFMKELDFVFADVIMAIIADFMLVWLPAPTVAIRA----PIAKGANSFAKFFYNCPDNAFQ--VALNGT--TYTLLQRCGAIVRNGAKLFAVGTGASLVGTAATNGLIAV--------------------------RRILDPSSAASGEDAED--VPILETSVAYGAYMAVSSNLRYQVLAGVVEQRILEPLLHQQKLALSLSSFAVRTANTFLGSLLWVDYAIWVGVQK 493          
BLAST of mRNA_Ecto-sp13_S_contig16681.4790.1 vs. uniprot
Match: A0A151TLP3_CAJCA (Uncharacterized protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TLP3_CAJCA)

HSP 1 Score: 143 bits (361), Expect = 1.040e-36
Identity = 98/265 (36.98%), Postives = 144/265 (54.34%), Query Frame = 1
Query:   76 RARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETISAWRTAAAAAPTAVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQQ 870
            R RLL D  F+TK+AIE   G   +  AE +KR ++F +ELDFV AD +  + A+F  VWL  PTV+++       A + GT+ KF   CP NAFQ  VA  G S  +++ +R  A++    KLF +G GA+L G G+   L                               A+K    + A EA+   VPV+ + +A G+++AV +NLRYQ +AG +EQRI + +L +   + S    AVR+ N ++GSL  VD+ R+VGVQ+
Sbjct:  138 RERLLADDLFLTKVAIECGVGIFTKTAAELEKRKEKFSKELDFVCADVIMAIVADFMLVWLPAPTVSLR----PPLAVSAGTIAKFFYGCPENAFQ--VALAGTS--YTLIQRIGAIVRNGAKLFAVGTGASLIGTGVTNALIN-----------------------------ARKVVDKSFAAEAED--VPVISTSIAYGVYMAVSSNLRYQILAGIIEQRILEPLLHQQKLILSAICFAVRTGNTFLGSLLWVDYARWVGVQR 363          
BLAST of mRNA_Ecto-sp13_S_contig16681.4790.1 vs. uniprot
Match: A0A443PX79_9MAGN (Protein RETICULATA-RELATED 4, chloroplastic-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PX79_9MAGN)

HSP 1 Score: 143 bits (361), Expect = 1.440e-36
Identity = 98/265 (36.98%), Postives = 142/265 (53.58%), Query Frame = 1
Query:   76 RARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETISAWRTAAAAAPTAVVGRGAAKSKRGLKRAQKARAAALAEEA-QKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ 867
            + RLL D  F+ K+ +E+V G  A+  AEY +RG++F +ELDFV AD +  + A+F  VWL  PTV+++       A + G + KF   CP NAFQ  +A  G S  +S  +R  A+     KLFV+G  A++ G G+   L                                 KAR A   E A +   VP+L + +A G+++AV +NLRYQ +AG VEQRI + +L ++  + S    AVR+ N Y+GSL  VD+ R+VGVQ
Sbjct:  158 KERLLADELFLHKITMEIVVGMFAKTAAEYNRRGEKFFKELDFVIADVVMAIIADFMLVWLPAPTVSLR----PPLAISAGPIAKFFHTCPDNAFQ--IALRGTS--YSFLQRIGAIARNGAKLFVVGTSASMVGTGVTNALI--------------------------------KARKAVNTEYAGEVEDVPILSTSVAYGVYMAVSSNLRYQLLAGVVEQRILEPLLHQHKLMLSAMCFAVRTGNTYLGSLMWVDYARWVGVQ 382          
BLAST of mRNA_Ecto-sp13_S_contig16681.4790.1 vs. uniprot
Match: UPI001CFB8E93 (protein RETICULATA-RELATED 4, chloroplastic-like n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFB8E93)

HSP 1 Score: 143 bits (361), Expect = 1.710e-36
Identity = 98/265 (36.98%), Postives = 145/265 (54.72%), Query Frame = 1
Query:   76 RARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETISAWRTAAAAAPTAVVGRGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQQ 870
            + RLL D  F+TK+AIE   G   +  AE ++R + F +ELDFV AD +  + A+F  VWL  PTVA++A      A + G + KFL  CP NAFQ  VA  G S  +S  +R  A++    KLF +G GA+L G G+   L  +                             +KA   + A+EA+   VPVL + +A G+++AV +NLRYQ +AG +EQRI + +L ++  + S     VR+ N ++GSL  VD+ R+VG+Q+
Sbjct:  163 KERLLADDLFLTKVAIECGVGIFTKTAAELERRRENFTKELDFVFADVVMAIIADFMLVWLPAPTVALRA----PLAVSAGPIAKFLHNCPDNAFQ--VALAGTS--YSFLQRIGAIMRNGAKLFAVGTGASLIGTGITNALINV-----------------------------RKAFDKSFADEAED--VPVLSTSVAYGVYMAVSSNLRYQVLAGVIEQRILEPLLHQHKLILSAICFVVRTGNTFLGSLMWVDYARWVGIQK 388          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16681.4790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAU0_9PHAE1.010e-17197.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZL4_ECTSI5.590e-16897.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CF64_9STRA5.690e-5447.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1EMP3_HEMAN8.930e-4138.11Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S3XYV0_HETAK9.870e-4136.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A251VLI5_HELAN3.170e-3837.36Uncharacterized protein n=1 Tax=Helianthus annuus ... [more]
A0A388L9G5_CHABU4.900e-3738.11Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A151TLP3_CAJCA1.040e-3636.98Uncharacterized protein n=1 Tax=Cajanus cajan TaxI... [more]
A0A443PX79_9MAGN1.440e-3636.98Protein RETICULATA-RELATED 4, chloroplastic-like p... [more]
UPI001CFB8E931.710e-3636.98protein RETICULATA-RELATED 4, chloroplastic-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16681contigEcto-sp13_S_contig16681:288..3761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score486.9
Seed ortholog evalue6.7e-135
Seed eggNOG ortholog2880.D7FZL4
Model size873
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons4
EggNOG free text desc.Protein RETICULATA-related
EggNOG OGs28IK9@1,2QQX6@2759
Ec32 ortholog descriptionProtein of unknown function DUF3411, plant
Ec32 orthologEc-25_003540.1
Cds size873
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462874.8194156-CDS-Ecto-sp13_S_contig16681:287..3641681462874.8194156-CDS-Ecto-sp13_S_contig16681:287..364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16681 288..364 +
1681462874.8288627-CDS-Ecto-sp13_S_contig16681:1783..20331681462874.8288627-CDS-Ecto-sp13_S_contig16681:1783..2033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16681 1784..2033 +
1681462874.836601-CDS-Ecto-sp13_S_contig16681:2517..29041681462874.836601-CDS-Ecto-sp13_S_contig16681:2517..2904Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16681 2518..2904 +
1681462874.844637-CDS-Ecto-sp13_S_contig16681:3602..37611681462874.844637-CDS-Ecto-sp13_S_contig16681:3602..3761Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16681 3603..3761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16681.4790.1prot_Ecto-sp13_S_contig16681.4790.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16681 288..3761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16681.4790.1

>prot_Ecto-sp13_S_contig16681.4790.1 ID=prot_Ecto-sp13_S_contig16681.4790.1|Name=mRNA_Ecto-sp13_S_contig16681.4790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=291bp
DPEGVLERLREAPDVAVDVSPLQEQRARLLGDTTFMTKLAIEMVTGTAAQ
FLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKE
AAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLF
VIGFGATLAGYGLIAGLETISAWRTAAAAAPTAVVGRGAAKSKRGLKRAQ
KARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFD
TMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQQ*
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mRNA from alignment at Ecto-sp13_S_contig16681:288..3761+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16681.4790.1 ID=mRNA_Ecto-sp13_S_contig16681.4790.1|Name=mRNA_Ecto-sp13_S_contig16681.4790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16681:288..3761+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATCCCGAAGGAGTGCTCGAGCGATTACGCGAAGCTCCTGACGTCGCCGT TGATGTCTCTCCTCTGCAAGAACAGCGGTAAGCTGGCGGAACCGTGCGTG CACAGCAGCAGCACCAGAATAGCGGTGGCTGCAGTATACGTAGTACTCCA GATATGGCGTCTTTGGCTTTCATTTCTTCGGCACCAGTTCGTGCAGCTCC ACCCCCGTCCCCTCTCCGGTGTTTCCCGCCACTTGCATGTTGTCCTTCGA GTTGGAAAGCGCTTACCCCTGCCTTCGGGCAAGGCAGACTCTCGGTTGCA GATTCCCTGTTTTTTGTTTCGTCAGGTAATGTGGCCGACGCCACACCTCG GTACTCGCTGCGTCTTTTACCATCAGTAAGAACTAATGATGCTCGGTCCC GAGGCGGATGCGGGCTGTGAAGAGGCAAAAGCAGGGCAAGGCACGAGATC ACTATATATGACCTTCGAGCACTGCGCGATAGCTTACAGCGTAGGCTCGA TGATCCCCATGCCCGCCTCCCCCATGTCGATAGTTTTTGGAGACCAAATG GTGGCCACAAGATGCTCAACATTAACACTGAAGGGCGGACGGCAGGAAAT GGTGACCATAAGATGATAAACATTAGGGGCGAAGGACAGGTAGTTCTATG ATTACGCATCAATGTGCGTATTAAACGCGAGGAAGAAATAACTTTACGTC GTCATGTTTAGCATTTTGTGGCCACCATTTATCTCTCAACACTACCGGCC GACAGGGGTAGGCAGGCGGGGGTGTCATTGAGCCTGCCTGCTGCATGGGT GGCGCGGAGGGGGGGGGTACACGAACATCACACAGCGTACGGAAGGCAAT CGGGGTCCTACGTCGCCAACCGACGAACTCATGAAACCTCCAAGAGTCGT GTCAAACGTTACCGTTACAGAAGCATTCCGGCAGCCCGTCTGGTGGGCGT TTCTTAGGCCCGTTTTAAAGACAGCGATTTTGGTTCCAAGGTTCCAAATT CCTGTTTCCATTTTTTTTCCAAAATTCAACGGTCTTACGGATTTGGTAAT TTGGAAGCGAAAAAGCTGCTGCATAAAACAGCCCTTGGGAGTTAGAGGAG TAGAAACCGTGCTCCAGTACATAACAGATGCGTGGTCTGCGGTCCAATGA CCCACAAGAAACTAACAAGGCCTGAGTATGCCCCGTCCCCTCTGCGGAGA CAATGCTCCGTCCTCTCGAGGACGCGTGGTCACTGGCGTAACAAGCGAGG CATAGCAAAACATAAGCCTCGCTGGGTTGAAAAGGCCGGACGTGATGTTT ATAAAATGGATAGGCTATAATAGGCGAAAAACAATTGAGCCACCTTTGGA AAAAGTAGGGAGGAAGGATTGGCCATCGGTGATGAGAATATTGCTTTATC CTCTCGAGGGCGCGTGGTCTAACTACAAAGGCGTGCAAAACATAAGAGTA CGCCCCCCACCTCCCCACCCCCACCTACAACGGTTTCAGGCTGGAGAGCG CGTCTCTTGGGAGACACCACGTTCATGACGAAGCTGGCCATCGAAATGGT GACTGGCACTGCGGCTCAGTTCCTGGCGGAGTACCAGAAGAGGGGCAAGA GATTCATGCAGGAGCTCGATTTCGTGGCAGCGGATACCTTGACGTGCCTC TTCGCCAACTTCGCCGCGGTGTGGCTGTCGTGCCCCACCGTGGCCGTCAA GGCCGTGTGTAAGAAGGAGGCGGCGAAGGCGGGCGGGACGTTGCAGGTGA ATGAAAGCGAAAGAAAAGCGCCGGAGGCGCCACAGCCGCAGGCGTGTGGT AAATGTACGAGTGAAGTGATTCTATCGATGTAGCTGTTGGTGTTGCGTTG TCTTGCACGCCCGATGAGAATCTCGTTTTTTATTGGAGCTCGAAGGCATC CGCGCTAGTTTGACCAGTACGGGTATTGAAGTACTTAGCGGAGACCGGAA CGGTTTCTTATGTGAAACTCAGCAACGATAACAACAACATATGTATCCTC TTCAAGCTCTCCCTATCACACGCATCCGCTTTCTACGATTCGCGGCGAAC CCAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCACCCCAANNNNNNNNTATGTGTTGCTTCTCCC CTCTCCTACCACACCCCCCCCCTTTTTCCAATTCGCGGCCCCCCCCCCCC CCCCCCCCCCCCCCCGTTGTGCCGTCGCAGAAATTCCTGGCAGCGTGCCC TTCGAACGCGTTCCAAAAAGTGGTGGCAGAAGGAGGGGTTTCAAAGACCT TCAGCGTCGCCGAGAGGGGAGCGGCTCTCCTTGTCCCCATGCCCAAGCTC TTTGTGATCGGTTTCGGAGCCACGCTAGCGGGGTACGGCCTGATCGCCGG CCTGGAGACCATCTCGGCCTGGAGAACCGCCGCCGCCGCGGCACCGACGG CGGTGGTAGGGAGGGGCGCCGCGAAATCGAAGAGGGGTCTCAAGAGAGCG CAGAAGGCTCGGGCGGCGGCTCTTGCGGAAGAGGCGCAGAAGCCTCCGGT GCCGGTGCTGGGGTCCGGGTTGGCGGTGGGGATGTTTCTGGCCGTGTGGA CGAATTTACGTTATCAGGTACGGCAGCGGCAGTTGTCGGCGTTTAATGAA GGACACCATGCAGGAGCTTGGTACCCAGCAGAAGTGTGTAAGGAATAGGT GGGGCATAAAGTTTATGACAACTCTACGTTATCAGGTACGGCAGCAGCAA TTGTCGTCCTTATCCCTGGTTTACTTAAGGACACCATGTTTTGCAGAAGC TTGTGCCTCGTAGAGAGGGGAGGCAGTACAGCATCAGTTGACACCCCTGG TCTATTGCTGTATTGATCGACACCCATGTTTTTCAGAAGCTTGGGGCCCC GCAGAGTGTTACAAAATAGGGGGGGGGAAGAAGTCTAGGGTGCTCCTTCC TTGTCTCTAGGACACTGTTGTTGAAGAAAAACAATACGTTTGTGTGTATG CATGCATTCGTGCGTTCATTGAACGGTCGGGAGTAACGAATGTCAACTTG GAGGCTTTGTCGTGTCTTTTTTCTTTTCGTCCCCACCGCCCATCGATCGT AGACGGTTGTGTACTGTTCCCCATCTGGTCCAGGGTCCATCCTTAAACGC GAACGTGTTTTTTGTTTCCTGGCTAGGATCTAGGGCCCCAGCCTCTCATA TTGTCACCGGCAAGAGTTATCCTTAGCTCCGGACCTTTGCTGTGTATCCG CCCGCCGCTCACTTCCGTCTATCCGCCAAACGCTACGTTGTAATTTTGTT TGTTTGCCGTCGCAGTTCATCGCTGGCGCCGTGGAACAGAGGATTTTCGA CACCATGCTGGCGAAAAACCCGGGGCTGAGCAGCCTCGCCTCGACGGCCG TGCGGTCGGCGAATCTCTACGTGGGGTCCCTCACCATCGTCGACTGGCTA CGTTACGTTGGGGTACAACAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16681:288..3761+

>mRNA_Ecto-sp13_S_contig16681.4790.1 ID=mRNA_Ecto-sp13_S_contig16681.4790.1|Name=mRNA_Ecto-sp13_S_contig16681.4790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16681:288..3761+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATCCCGAAGGAGTGCTCGAGCGATTACGCGAAGCTCCTGACGTCGCCGT
TGATGTCTCTCCTCTGCAAGAACAGCGAGCGCGTCTCTTGGGAGACACCA
CGTTCATGACGAAGCTGGCCATCGAAATGGTGACTGGCACTGCGGCTCAG
TTCCTGGCGGAGTACCAGAAGAGGGGCAAGAGATTCATGCAGGAGCTCGA
TTTCGTGGCAGCGGATACCTTGACGTGCCTCTTCGCCAACTTCGCCGCGG
TGTGGCTGTCGTGCCCCACCGTGGCCGTCAAGGCCGTGTGTAAGAAGGAG
GCGGCGAAGGCGGGCGGGACGTTGCAGAAATTCCTGGCAGCGTGCCCTTC
GAACGCGTTCCAAAAAGTGGTGGCAGAAGGAGGGGTTTCAAAGACCTTCA
GCGTCGCCGAGAGGGGAGCGGCTCTCCTTGTCCCCATGCCCAAGCTCTTT
GTGATCGGTTTCGGAGCCACGCTAGCGGGGTACGGCCTGATCGCCGGCCT
GGAGACCATCTCGGCCTGGAGAACCGCCGCCGCCGCGGCACCGACGGCGG
TGGTAGGGAGGGGCGCCGCGAAATCGAAGAGGGGTCTCAAGAGAGCGCAG
AAGGCTCGGGCGGCGGCTCTTGCGGAAGAGGCGCAGAAGCCTCCGGTGCC
GGTGCTGGGGTCCGGGTTGGCGGTGGGGATGTTTCTGGCCGTGTGGACGA
ATTTACGTTATCAGTTCATCGCTGGCGCCGTGGAACAGAGGATTTTCGAC
ACCATGCTGGCGAAAAACCCGGGGCTGAGCAGCCTCGCCTCGACGGCCGT
GCGGTCGGCGAATCTCTACGTGGGGTCCCTCACCATCGTCGACTGGCTAC
GTTACGTTGGGGTACAACAGTAA
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