prot_Ecto-sp13_S_contig1668.4784.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1668.4784.1
Unique Nameprot_Ecto-sp13_S_contig1668.4784.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length453
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1668.4784.1 vs. uniprot
Match: D7FTM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM3_ECTSI)

HSP 1 Score: 513 bits (1320), Expect = 1.040e-178
Identity = 260/278 (93.53%), Postives = 265/278 (95.32%), Query Frame = 0 
Query:    1 PGGRTPLHHAAGWGTYEVCFALLQAGADKTARGSEGETAQHLAQCRQRGKVVTLLDGWRPLGLTATQTQKIKESRGEGPLRPWETETDPEIRSQLRALDMKRDTFGERHAGTHTTLGRLGGLCRAAGRLEDAKGHMQSLVELLKSKPAAGGESCEPPPSPHEPGALAVALGNLGVVCRELGEAEEASGLLEASLNAAYSSTTNASVRDPHRKHLVDAATRNLGLHYLSEGRVEEARPLLRACLESYEENLQSDMPGGHESLDLITPLTVLSYADMLAG 278
            PGGRTPLH AAGWGTYEVCFALLQAGADKTAR S+GETAQHLA+ RQRGKVVTLLDGWRPLGLTATQTQKIKESRGEGPLRPWETETDPE RSQL+ LDMKR TFGERHAGTHTTLGRLGGLCRAAGRLEDAKGH+QSLVELLKS+PAAGG SCEPPPS HEPGALAVALGNLGVVCRELGEAEEASGLLEASLNAA  STTNAS R PHRKHLVDAATRNLGLHYLSEGRVEEARPLLRACLESYEE LQSDMPGGHESLDLITPLTVLSYADMLAG
Sbjct:   82 PGGRTPLHLAAGWGTYEVCFALLQAGADKTARDSKGETAQHLAEYRQRGKVVTLLDGWRPLGLTATQTQKIKESRGEGPLRPWETETDPETRSQLQTLDMKRGTFGERHAGTHTTLGRLGGLCRAAGRLEDAKGHLQSLVELLKSEPAAGGGSCEPPPSRHEPGALAVALGNLGVVCRELGEAEEASGLLEASLNAASPSTTNASARGPHRKHLVDAATRNLGLHYLSEGRVEEARPLLRACLESYEEILQSDMPGGHESLDLITPLTVLSYADMLAG 359
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1668.4784.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTM3_ECTSI1.040e-17893.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 2..31
e-value: 5.1E-4
score: 29.4
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 2..34
score: 11.274
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 1..74
e-value: 2.0E-12
score: 49.0
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 3..55
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 214..305
e-value: 8.4E-6
score: 26.9
coord: 90..213
e-value: 2.5E-11
score: 45.1
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 219..352
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 112..253
NoneNo IPR availablePFAMPF13374TPR_10coord: 220..252
e-value: 0.002
score: 18.0
IPR019734Tetratricopeptide repeatPFAMPF13176TPR_7coord: 169..199
e-value: 0.0031
score: 17.4
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 2..55
score: 14.928

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1668contigEcto-sp13_S_contig1668:1..3003 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1668.4784.1mRNA_Ecto-sp13_S_contig1668.4784.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1668 1..3003 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1668.4784.1 ID=prot_Ecto-sp13_S_contig1668.4784.1|Name=mRNA_Ecto-sp13_S_contig1668.4784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=453bp
PGGRTPLHHAAGWGTYEVCFALLQAGADKTARGSEGETAQHLAQCRQRGK
VVTLLDGWRPLGLTATQTQKIKESRGEGPLRPWETETDPEIRSQLRALDM
KRDTFGERHAGTHTTLGRLGGLCRAAGRLEDAKGHMQSLVELLKSKPAAG
GESCEPPPSPHEPGALAVALGNLGVVCRELGEAEEASGLLEASLNAAYSS
TTNASVRDPHRKHLVDAATRNLGLHYLSEGRVEEARPLLRACLESYEENL
QSDMPGGHESLDLITPLTVLSYADMLAGDHTAAAEHSARAQTIASKYREH
GNAPDGVLPVTEVGKSQELSDPLPRLEWMGVQRFVAGDYSSASEFFAQAR
ELVMLRPRDRDCSKSKGKTDAACPSGSRRGVCRVAGGGGRRQAPTDTIPG
GDKKAASSRKDPRDSSAGDLGGAARPGEFHPDAMRLDRCMAVSICLQGPE
AF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR036770Ankyrin_rpt-contain_sf
IPR011990TPR-like_helical_dom_sf
IPR019734TPR_repeat
IPR020683Ankyrin_rpt-contain_dom