mRNA_Ecto-sp13_S_contig1668.4784.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1668.4784.1
Unique NamemRNA_Ecto-sp13_S_contig1668.4784.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1668.4784.1 vs. uniprot
Match: D7FTM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM3_ECTSI)

HSP 1 Score: 513 bits (1320), Expect = 1.040e-178
Identity = 260/278 (93.53%), Postives = 265/278 (95.32%), Query Frame = 1 
Query:    1 PGGRTPLHHAAGWGTYEVCFALLQAGADKTARGSEGETAQHLAQCRQRGKVVTLLDGWRPLGLTATQTQKIKESRGEGPLRPWETETDPEIRSQLRALDMKRDTFGERHAGTHTTLGRLGGLCRAAGRLEDAKGHMQSLVELLKSKPAAGGESCEPPPSPHEPGALAVALGNLGVVCRELGEAEEASGLLEASLNAAYSSTTNASVRDPHRKHLVDAATRNLGLHYLSEGRVEEARPLLRACLESYEENLQSDMPGGHESLDLITPLTVLSYADMLAG 834
            PGGRTPLH AAGWGTYEVCFALLQAGADKTAR S+GETAQHLA+ RQRGKVVTLLDGWRPLGLTATQTQKIKESRGEGPLRPWETETDPE RSQL+ LDMKR TFGERHAGTHTTLGRLGGLCRAAGRLEDAKGH+QSLVELLKS+PAAGG SCEPPPS HEPGALAVALGNLGVVCRELGEAEEASGLLEASLNAA  STTNAS R PHRKHLVDAATRNLGLHYLSEGRVEEARPLLRACLESYEE LQSDMPGGHESLDLITPLTVLSYADMLAG
Sbjct:   82 PGGRTPLHLAAGWGTYEVCFALLQAGADKTARDSKGETAQHLAEYRQRGKVVTLLDGWRPLGLTATQTQKIKESRGEGPLRPWETETDPETRSQLQTLDMKRGTFGERHAGTHTTLGRLGGLCRAAGRLEDAKGHLQSLVELLKSEPAAGGGSCEPPPSRHEPGALAVALGNLGVVCRELGEAEEASGLLEASLNAASPSTTNASARGPHRKHLVDAATRNLGLHYLSEGRVEEARPLLRACLESYEEILQSDMPGGHESLDLITPLTVLSYADMLAG 359
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1668.4784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTM3_ECTSI1.040e-17893.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1668contigEcto-sp13_S_contig1668:1..3003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score519.6
Seed ortholog evalue1.4e-144
Seed eggNOG ortholog2880.D7FTM3
Model size1359
KEGG koko:K09258,ko:K21435
KEGG Pathwayko04668,map04668
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-06_008820.1
Cds size1359
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03036,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1668.4784.1prot_Ecto-sp13_S_contig1668.4784.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1668 1..3003 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462874.5682094-CDS-Ecto-sp13_S_contig1668:0..511681462874.5682094-CDS-Ecto-sp13_S_contig1668:0..51Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1668 1..51 +
1681462874.5785868-CDS-Ecto-sp13_S_contig1668:470..6611681462874.5785868-CDS-Ecto-sp13_S_contig1668:470..661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1668 471..661 +
1681462874.5869215-CDS-Ecto-sp13_S_contig1668:1039..11871681462874.5869215-CDS-Ecto-sp13_S_contig1668:1039..1187Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1668 1040..1187 +
1681462874.5952504-CDS-Ecto-sp13_S_contig1668:1502..17321681462874.5952504-CDS-Ecto-sp13_S_contig1668:1502..1732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1668 1503..1732 +
1681462874.6034484-CDS-Ecto-sp13_S_contig1668:2045..22571681462874.6034484-CDS-Ecto-sp13_S_contig1668:2045..2257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1668 2046..2257 +
1681462874.6116898-CDS-Ecto-sp13_S_contig1668:2476..30031681462874.6116898-CDS-Ecto-sp13_S_contig1668:2476..3003Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1668 2477..3003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1668.4784.1

>prot_Ecto-sp13_S_contig1668.4784.1 ID=prot_Ecto-sp13_S_contig1668.4784.1|Name=mRNA_Ecto-sp13_S_contig1668.4784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=453bp
PGGRTPLHHAAGWGTYEVCFALLQAGADKTARGSEGETAQHLAQCRQRGK
VVTLLDGWRPLGLTATQTQKIKESRGEGPLRPWETETDPEIRSQLRALDM
KRDTFGERHAGTHTTLGRLGGLCRAAGRLEDAKGHMQSLVELLKSKPAAG
GESCEPPPSPHEPGALAVALGNLGVVCRELGEAEEASGLLEASLNAAYSS
TTNASVRDPHRKHLVDAATRNLGLHYLSEGRVEEARPLLRACLESYEENL
QSDMPGGHESLDLITPLTVLSYADMLAGDHTAAAEHSARAQTIASKYREH
GNAPDGVLPVTEVGKSQELSDPLPRLEWMGVQRFVAGDYSSASEFFAQAR
ELVMLRPRDRDCSKSKGKTDAACPSGSRRGVCRVAGGGGRRQAPTDTIPG
GDKKAASSRKDPRDSSAGDLGGAARPGEFHPDAMRLDRCMAVSICLQGPE
AF*
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mRNA from alignment at Ecto-sp13_S_contig1668:1..3003+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1668.4784.1 ID=mRNA_Ecto-sp13_S_contig1668.4784.1|Name=mRNA_Ecto-sp13_S_contig1668.4784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3003bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1668:1..3003+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGGCGGGAGGACTCCGCTTCACCATGCTGCCGGGTGGGGAACCTATGA
GGTAGGTGCTAAGGTCGCAGAGGGAGACAGCACACACATATATATATATA
TATCGTGCGTTGGCTACTGCATGCGGACACATACGGGGCGTTGGCTACTG
CATGTGGACATAAACGGGAAAAGCGTGTGCATCGAACTATTGGTTGTGAA
GGAACGGCTGAGAAAAGGGTAGTGGGCGGCGAAATCATGGGACTGAGTCG
GGCTATCATGGTCGCGATCTCCAGCTCAGACCCGTGCGTCGTTCCTTTGT
CTGGTTCGATCATTGACGCGTGGCGACCGTTGTTGAGGTGATCATTCAGT
TCAAAGGGCTCCCGTGCAGAGTCCCACACAAGACAAAATGCACTCGCCAG
GGTAACAGCCCGAAAGGGGGGCATCAAGGTTGCACTTGGCCGTCGCTCCA
CCACCGGCCACCGTCATCAGGTGTGCTTCGCTCTCCTTCAGGCGGGAGCC
GACAAGACGGCAAGAGGCAGCGAGGGAGAAACCGCGCAACATCTCGCACA
ATGTCGACAAAGAGGCAAGGTCGTCACTCTCCTGGACGGTTGGAGGCCGC
TGGGTTTGACGGCCACTCAGACGCAGAAGATCAAGGAGTCTAGGGGAGAA
GGGCCGTTGAGGTAAGGCATGCCCGCCCTTCACGTGCTAGCGTGGGTCAT
CGAAAAGTCCTGCCCAGGTAAGGGGTACGGTGCTTCGCGGGTCTCGAAAT
ACGCTTCGTTTGTAGACCTACAATCTTTCGGCGGGAAATCTAGGAAGTAT
CGCATCGAACTGGATAGCGTATGGGTCGGAAGGTGTATTCACGTTTGGAG
AATTTTGAAGTGCGAGATTGTGTTGTCCCTGTTCCGTCTACGCCAACTCG
CGTCGAGACACACTACCGGGTTTTGTTACGGGCTGTCAAATGCAATGATC
AGTCAAACCCCACACGGAGCCATCAGTTTCGCCCCTCATGAGAAAACCAC
CCGTCTTGTGCACCAAACTGCGCAATTCGACCAATGCAGACCATGGGAGA
CGGAAACCGATCCCGAGATAAGGTCACAGCTGCGAGCGCTTGACATGAAG
AGAGACACGTTCGGAGAGAGGCACGCAGGCACCCACACAACTCTCGGCAG
GCTTGGTGGCCTGTGTCGAGCGGCGGGGAGACTGGAGGTGGGCAGGGTGT
TGGAAGCGGACCGAACCGTGACGATCAGAGAATCGATGCGATAGGTGGAT
GGATAGACTACATTTATCCGAGGTCTCCCTTCGGGACATCGGTGTCAAGC
CCCCCGAGGGCGACGGAAGACGACATGCCCGGAGGTTTCCTCATGGGCTG
GTGTGTCTCAATGACTGCTGTCAGGCCATTTACATGAACTTTGGGAGCAA
GCTCGGCCTAACAACATGATGTCAGCGGGATTCATCCGAAAGCGAGTAAA
TGAAAACAAACGTTCCGCCATTCTCGGTGAACTACAAATCCTCAATCAAC
AGGACGCCAAGGGCCACATGCAGAGTCTGGTCGAGCTTCTGAAAAGCAAG
CCGGCCGCTGGCGGAGAAAGCTGTGAACCACCGCCATCTCCGCACGAGCC
TGGAGCTTTGGCCGTGGCGCTCGGAAACCTCGGGGTGGTGTGCCGTGAAC
TAGGAGAAGCCGAAGAGGCTTCGGGGCTGTTGGAGGCGTCTCTGAACGCC
GCCTACTCGTCAACTACGAATGCCTCTGTTAGGTGCGACTGCTGTCGTAC
CACCGGGTAGAGCAGTAGGGTCGAGGTCTTCCTCTGAGGAATGATTTCCA
GCAGCCACATGGGTGGATGGCGTCGGCTCCATGTATGATGCGGGGGTCCA
TATGCCATTGCAAGCAGCTGATGCCCTTTGCTGCTCATAGTACAGGATCT
GAAGGCAATAACCAACATTTTTTACACGCGGTCGGCTCGGATAGTCGTCG
CGCAGCGTGTGACAATACAGGTCGTGCTTCCACGCTTGAATGCGTTCTCC
CTTCCGACGCCCCCTTCCCCCGTTGTGCGCGAGGCGTGCCCGCAGGGACC
CACATCGGAAGCACTTAGTGGATGCCGCGACTCGTAACCTTGGCCTTCAC
TATTTATCAGAGGGTAGGGTGGAAGAGGCTCGTCCGCTCTTGCGCGCATG
CCTCGAGAGCTATGAGGAAAACCTCCAGTCCGACATGCCAGGGGGGCACG
AAAGCTTGGACCTTATAACTCCGTTAACGGTGCTGTCCTACGCCGACATG
CTAGCAGGTGGGGGTAAGCACACATGAAACGGCACCTCGTGAACGCTTCG
AAATTTACTTCCCCATACATACTATCGACATCGTGAGATGCTGGCCTGAA
CGGGAGTTAGCACAGACCGTCGCGATTCTTTCCAAACCGACGATCAAGCC
TTACCCTCGGACCTTCCATTACCAGCGCCTTACCTTTTTCCCTGTATGGC
GAAAATAATTCTACATAACACAATAGGTGACCACACCGCCGCCGCCGAAC
ACTCCGCACGGGCTCAAACAATCGCATCAAAGTACCGGGAGCACGGCAAT
GCACCTGACGGTGTCCTTCCTGTCACCGAGGTCGGAAAGTCGCAAGAGCT
TTCCGACCCGCTTCCCCGCCTGGAGTGGATGGGAGTTCAACGGTTCGTGG
CAGGAGACTATTCGTCCGCCAGCGAGTTCTTCGCGCAAGCGCGTGAACTC
GTGATGCTGCGGCCCCGGGACCGGGACTGCTCGAAGTCGAAAGGGAAGAC
CGACGCTGCTTGCCCAAGCGGAAGTAGAAGAGGCGTCTGCCGGGTAGCGG
GGGGCGGGGGCCGGAGACAAGCACCAACAGATACCATCCCTGGTGGAGAC
AAGAAAGCTGCCTCGTCGAGAAAGGACCCGCGCGACAGCAGCGCTGGGGA
CCTTGGAGGCGCTGCTAGGCCGGGAGAGTTTCATCCGGACGCGATGCGAC
TCGACCGTTGCATGGCTGTTTCCATCTGTCTGCAGGGACCTGAAGCATTT
TAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1668:1..3003+

>mRNA_Ecto-sp13_S_contig1668.4784.1 ID=mRNA_Ecto-sp13_S_contig1668.4784.1|Name=mRNA_Ecto-sp13_S_contig1668.4784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1359bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1668:1..3003+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGGCGGGAGGACTCCGCTTCACCATGCTGCCGGGTGGGGAACCTATGA
GGTGTGCTTCGCTCTCCTTCAGGCGGGAGCCGACAAGACGGCAAGAGGCA
GCGAGGGAGAAACCGCGCAACATCTCGCACAATGTCGACAAAGAGGCAAG
GTCGTCACTCTCCTGGACGGTTGGAGGCCGCTGGGTTTGACGGCCACTCA
GACGCAGAAGATCAAGGAGTCTAGGGGAGAAGGGCCGTTGAGACCATGGG
AGACGGAAACCGATCCCGAGATAAGGTCACAGCTGCGAGCGCTTGACATG
AAGAGAGACACGTTCGGAGAGAGGCACGCAGGCACCCACACAACTCTCGG
CAGGCTTGGTGGCCTGTGTCGAGCGGCGGGGAGACTGGAGGACGCCAAGG
GCCACATGCAGAGTCTGGTCGAGCTTCTGAAAAGCAAGCCGGCCGCTGGC
GGAGAAAGCTGTGAACCACCGCCATCTCCGCACGAGCCTGGAGCTTTGGC
CGTGGCGCTCGGAAACCTCGGGGTGGTGTGCCGTGAACTAGGAGAAGCCG
AAGAGGCTTCGGGGCTGTTGGAGGCGTCTCTGAACGCCGCCTACTCGTCA
ACTACGAATGCCTCTGTTAGGGACCCACATCGGAAGCACTTAGTGGATGC
CGCGACTCGTAACCTTGGCCTTCACTATTTATCAGAGGGTAGGGTGGAAG
AGGCTCGTCCGCTCTTGCGCGCATGCCTCGAGAGCTATGAGGAAAACCTC
CAGTCCGACATGCCAGGGGGGCACGAAAGCTTGGACCTTATAACTCCGTT
AACGGTGCTGTCCTACGCCGACATGCTAGCAGGTGACCACACCGCCGCCG
CCGAACACTCCGCACGGGCTCAAACAATCGCATCAAAGTACCGGGAGCAC
GGCAATGCACCTGACGGTGTCCTTCCTGTCACCGAGGTCGGAAAGTCGCA
AGAGCTTTCCGACCCGCTTCCCCGCCTGGAGTGGATGGGAGTTCAACGGT
TCGTGGCAGGAGACTATTCGTCCGCCAGCGAGTTCTTCGCGCAAGCGCGT
GAACTCGTGATGCTGCGGCCCCGGGACCGGGACTGCTCGAAGTCGAAAGG
GAAGACCGACGCTGCTTGCCCAAGCGGAAGTAGAAGAGGCGTCTGCCGGG
TAGCGGGGGGCGGGGGCCGGAGACAAGCACCAACAGATACCATCCCTGGT
GGAGACAAGAAAGCTGCCTCGTCGAGAAAGGACCCGCGCGACAGCAGCGC
TGGGGACCTTGGAGGCGCTGCTAGGCCGGGAGAGTTTCATCCGGACGCGA
TGCGACTCGACCGTTGCATGGCTGTTTCCATCTGTCTGCAGGGACCTGAA
GCATTTTAG
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