mRNA_Ecto-sp13_S_contig1668.4787.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1668.4787.1
Unique NamemRNA_Ecto-sp13_S_contig1668.4787.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1668.4787.1 vs. uniprot
Match: D7FTM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM1_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 2.330e-42
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:  187 DPLEPIPGEVKLVPSMFPDRSPTVFFEYPKELGMARFNNVYFSEPLGSRRLLFKCHWERNSVKNAFFRAGFSRTRSTI 420
            DPLEPIPGEVKLVPSMFPDRSPTVFFEYPKELGMARFNNVYFSEPLGSRRLLFKCHWERNSVKNAFFRAGFSRTRST+
Sbjct:  227 DPLEPIPGEVKLVPSMFPDRSPTVFFEYPKELGMARFNNVYFSEPLGSRRLLFKCHWERNSVKNAFFRAGFSRTRSTM 304
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BLAST of mRNA_Ecto-sp13_S_contig1668.4787.1 vs. uniprot
Match: A0A7S2RSL0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSL0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.030e-17
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:  187 DPLEPIPGEVKLVPSMFPDRSPTVFFEYPKELGMARFNNVYFSEPLGSRRLLFKCHWERNSVKNAFFRAGFSR 405
            DPLEP+ G+V+LVPS+F  R PT+FF+YP ELG  R    +  +PL +R+L F   WERN VKNAF RAGF R
Sbjct:   58 DPLEPVAGQVRLVPSVFQGRQPTIFFDYPSELGETR-GTPFVVQPLNARKLAFATKWERNCVKNAFARAGFER 129
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BLAST of mRNA_Ecto-sp13_S_contig1668.4787.1 vs. uniprot
Match: F0YB18_AURAN (FH2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB18_AURAN)

HSP 1 Score: 70.5 bits (171), Expect = 1.510e-10
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:  190 PLEPIPGEVKLVPSMFPDRSP-TVFFEYPKELGMARFNNVYFSEPLGSRRLLFKCHWERNSVKNAFFRAGFSRTR 411
            P +P    + + PS++P++ P TV+F YPK++   R      +EPLG R+L ++C WERN VKNAF  AGF R R
Sbjct:  974 PPKPEGRMINMCPSLWPEQRPGTVYFSYPKDVKTRRTGGAPVAEPLGQRKLNYRCTWERNCVKNAFTLAGFKRVR 1048
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BLAST of mRNA_Ecto-sp13_S_contig1668.4787.1 vs. uniprot
Match: A0A7S3ZS96_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZS96_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.310e-9
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:  190 PLEPIPGEVKLVPSMFPD-RSPTVFFEYP-KELGMARFNNVYFSEPLGSRRLLFKCHWERNSVKNAFFRAGFSRTR 411
            P +P    V++ PS++PD R  TV+F YP K++ + R   +  +  LG+RRL ++C WERN +KNAF  AGF R +
Sbjct:   97 PAQPASRVVRMCPSLWPDAREATVYFPYPQKDVNLERSGPLPVAADLGTRRLAYRCTWERNCIKNAFSLAGFRRVK 172
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BLAST of mRNA_Ecto-sp13_S_contig1668.4787.1 vs. uniprot
Match: A0A8J2S935_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S935_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.210e-9
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:  190 PLEPIPGEVKLVPSMFPD-RSPTVFFEYP-KELGMARFNNVYFSEPLGSRRLLFKCHWERNSVKNAFFRAGFSRTR 411
            P +P    V++ PS++PD R  TV+F YP K++ + R   +  +  LG+RRL ++C WERN +KNAF  AGF R +
Sbjct:   51 PAQPASRVVRMCPSLWPDAREATVYFPYPQKDVNLERSGPLPVAADLGTRRLAYRCTWERNCIKNAFSLAGFRRVK 126
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BLAST of mRNA_Ecto-sp13_S_contig1668.4787.1 vs. uniprot
Match: A0A067C5Z8_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067C5Z8_SAPPC)

HSP 1 Score: 62.0 bits (149), Expect = 9.770e-8
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:  205 PGEVKLVPSMFPDRSPTVFFEYPKELGMARFN--NVYFSE-PLGSRRLLFKCHWERNSVKNAFFRAGFSR 405
            P  +KL  S FP+R+PT+ F+YP +L + R     V  S+ P  +  + FKC+WERN VKNAF RAGF R
Sbjct:   85 PRTLKLQHSRFPNRTPTICFDYPLDLHVERTYPAGVNTSDAPAEANIVFFKCYWERNCVKNAFVRAGFRR 154
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BLAST of mRNA_Ecto-sp13_S_contig1668.4787.1 vs. uniprot
Match: A0A1W0A8L2_9STRA (Tubulin polyglutamylase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8L2_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.980e-7
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:  211 EVKLVPSMFPDRSPTVFFEYPKELGMAR-----FNNVYFSEPLGSRRLLFKCHWERNSVKNAFFRAGFSR 405
            ++K+  S FP+R PT+ F+YP +L ++R      N    S    +  + FKC+WERN VKNAF RAGF R
Sbjct:   73 QMKIQFSRFPNRIPTICFDYPSDLQVSRQHSPGINTTEISSE--TNPVFFKCYWERNCVKNAFVRAGFCR 140
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BLAST of mRNA_Ecto-sp13_S_contig1668.4787.1 vs. uniprot
Match: A0A6G0WB19_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WB19_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.910e-6
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:  214 VKLVPSMFPDRSPTVFFEYPKELGMARF--NNVYFSEPLGSRRLLFKCHWERNSVKNAFFRAGFSR 405
            +K++ S +P+R P V F+YP +L + R   + V   +      + FKC+WERN +KNAF+RAG  R
Sbjct:   92 MKIMHSRYPNRPPVVCFDYPSDLNVKRSYPDGVVVQDVDMRVSIFFKCYWERNCIKNAFYRAGLVR 157
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BLAST of mRNA_Ecto-sp13_S_contig1668.4787.1 vs. uniprot
Match: A0A7S0SWS3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SWS3_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 5.130e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 3 
Query:  432 EGFRNLNRFQKINHFPGSWCIGRKDRLMRTLARHKR 539
            E FR LNR+Q++NHFPG+W +GRKDRL R + R +R
Sbjct:   87 EDFRKLNRYQRVNHFPGTWELGRKDRLCRNIGRMRR 122
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BLAST of mRNA_Ecto-sp13_S_contig1668.4787.1 vs. uniprot
Match: A0A482S2Q1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2Q1_9ARCH)

HSP 1 Score: 54.7 bits (130), Expect = 1.470e-5
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 3 
Query:  420 HPTREGFRNLNRFQKINHFPGSWCIGRKDRLMRTLARHKR 539
            H   E  ++L  +QK+NHFP SWC+GRKDRL R L++ KR
Sbjct:  103 HVPDEDLKHLEAYQKVNHFPNSWCVGRKDRLSRLLSQFKR 142
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1668.4787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FTM1_ECTSI2.330e-4298.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RSL0_9STRA8.030e-1757.53Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YB18_AURAN1.510e-1045.33FH2 domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S3ZS96_9STRA4.310e-943.42Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A8J2S935_9STRA5.210e-943.42Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A067C5Z8_SAPPC9.770e-848.57Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A1W0A8L2_9STRA5.980e-744.29Tubulin polyglutamylase n=1 Tax=Thraustotheca clav... [more]
A0A6G0WB19_9STRA4.910e-640.91Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A7S0SWS3_9CHLO5.130e-661.11Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A482S2Q1_9ARCH1.470e-555.00Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1668contigEcto-sp13_S_contig1668:12263..13616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size625
Hectar predicted targeting categoryother localisation
Exons3
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462874.515606-UTR-Ecto-sp13_S_contig1668:12262..124341681462874.515606-UTR-Ecto-sp13_S_contig1668:12262..12434Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1668 12263..12434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462874.5247483-CDS-Ecto-sp13_S_contig1668:12434..126811681462874.5247483-CDS-Ecto-sp13_S_contig1668:12434..12681Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1668 12435..12681 +
1681462874.533553-CDS-Ecto-sp13_S_contig1668:12706..127291681462874.533553-CDS-Ecto-sp13_S_contig1668:12706..12729Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1668 12707..12729 +
1681462874.5422282-CDS-Ecto-sp13_S_contig1668:13433..136161681462874.5422282-CDS-Ecto-sp13_S_contig1668:13433..13616Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1668 13434..13616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1668.4787.1prot_Ecto-sp13_S_contig1668.4787.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1668 12435..13616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1668.4787.1

>prot_Ecto-sp13_S_contig1668.4787.1 ID=prot_Ecto-sp13_S_contig1668.4787.1|Name=mRNA_Ecto-sp13_S_contig1668.4787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp
MATPTTRWSRSRERSSSSPACSPTGHRRCSSSTPRSSAWPASTTSTSRSL
WGRGGCCSSATGSGTASRTPSSARGSRALGAPSPNAGRVQEPEPFPEDQP
LPGVLVHRPKGQADAHPGQAQAGDERRGGGSGGGSGGNGGSVWGCSERWW
R
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mRNA from alignment at Ecto-sp13_S_contig1668:12263..13616+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1668.4787.1 ID=mRNA_Ecto-sp13_S_contig1668.4787.1|Name=mRNA_Ecto-sp13_S_contig1668.4787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1668:12263..13616+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGACGACGAAGACGGAGGGTAGGAGAGGAAGGGGCAGCAGAAGGAGGAAG
CCGTTCGAACGAAGGGAACGGGTCGGACGCCGGCTACGCGCAAGACGCCG
ACTCGACGACGTCGCCGTCGGACAGCGACAACGACTGCAGCGGCAGTGAC
TGCAGCGGCAGCATCAGCAGCGATGGCGACGCCGACGACCCGCTGGAGCC
GATCCCGGGAGAGGTCAAGCTCGTCCCCAGCATGTTCCCCGACCGGTCAC
CGACGGTGTTCTTCGAGTACCCCAAGGAGCTCGGCATGGCCCGCTTCAAC
AACGTCTACTTCTCGGAGCCTCTGGGGTCGAGGCGGCTGCTGTTCAAGTG
CCACTGGGAGCGGAACAGCGTCAAGAACGCCTTCTTCCGCGCGGGGTTCT
CGCGCACTAGGAGCACCATGTCGTGGACCGCCTCCTGGGGCAAGCACCCA
ACGCGGGAAGGGTTCAGGTGCGACGGCAGGGTTAACGGGGTTCTTCGCTC
TCTTTTGGTCGCCAGTCGCGTGGGGCGTGAACGGTGTCCTTTTCGCGTTG
TTTCTATTGTAGCAGCCTCTTCGTGGTGCAGAGGACGGCGGAGCAAAAGC
GGGGGAATAACCGCTTCGTTTGTTCGTTTTTCACGTTGACAGAGGCGTGC
GAGTTCGTTGTTAAGTCTTTTTTCTCGACGGGTGTATTTCAACCCAACCC
GCTGCTTCCAGACAAATAGCGAACGTCGGCGTATCTCCTTGCTAACACGC
CGAGTGGGACCGGGTGGATCAACCCGAACGACTTCGCCATTTCGTTTTCG
GATAATCGTGGCGTCGTTGGCTCTGAAAAGGCTTTAGTAGTGCGTGATCA
TGGGTGGTTTTCACGGTTTACCCTCGATTTGAGACAGATAGCCTGTGGTC
CTGGTCAAAGATACTGTATCCTCATGGCAAGTCCCGACCTATCTGAGAAC
ATAGACACAGCTGTTAACACCGGAGTTTGCGACGTGACAACAATGCGGCA
GCTCTCACAGGGCAAGAACACCCCCCCTCCATTCCCTCGTCTGGCTTCAA
TTGTCATTCTCAATACCGCAACACGTGTATCGCTTCCGTTGTTTCGCCCC
AACCTCTCCGCACCTTCTTTTTCCAAATCACGTACAAGACGACGCTTGCC
CCCCCCGTTGTCCCATCCCAGGAACCTGAACCGTTTCCAGAAGATCAACC
ACTTCCCGGGGTCCTGGTGCATCGGCCGAAAGGACAGGCTGATGCGCACC
CTGGCCAGGCACAAGCGGGAGATGAACGGCGCGGCGGCGGCAGCGGCGGC
GGCAGCGGCGGCAACGGCGGCAGCGTCTGGGGGTGTTCAGAAAGGTGGTG
GAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1668:12263..13616+

>mRNA_Ecto-sp13_S_contig1668.4787.1 ID=mRNA_Ecto-sp13_S_contig1668.4787.1|Name=mRNA_Ecto-sp13_S_contig1668.4787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1668:12263..13616+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGACGCCGACGACCCGCTGGAGCCGATCCCGGGAGAGGTCAAGCTC
GTCCCCAGCATGTTCCCCGACCGGTCACCGACGGTGTTCTTCGAGTACCC
CAAGGAGCTCGGCATGGCCCGCTTCAACAACGTCTACTTCTCGGAGCCTC
TGGGGTCGAGGCGGCTGCTGTTCAAGTGCCACTGGGAGCGGAACAGCGTC
AAGAACGCCTTCTTCCGCGCGGGGTTCTCGCGCACTAGGAGCACCATCAC
CCAACGCGGGAAGGGTTCAGGAACCTGAACCGTTTCCAGAAGATCAACCA
CTTCCCGGGGTCCTGGTGCATCGGCCGAAAGGACAGGCTGATGCGCACCC
TGGCCAGGCACAAGCGGGAGATGAACGGCGCGGCGGCGGCAGCGGCGGCG
GCAGCGGCGGCAACGGCGGCAGCGTCTGGGGGTGTTCAGAAAGGTGGTGG
AGG
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