mRNA_Ecto-sp13_S_contig1668.4786.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1668.4786.1
Unique NamemRNA_Ecto-sp13_S_contig1668.4786.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1668.4786.1 vs. uniprot
Match: D7FTM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.250e-18
Identity = 54/71 (76.06%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:   91 MSATGSTTPAAQQVPERERRERALRLPQQRPSGDGGGDSSTGPEGNAAADDDEDCRDGGRSDESTQFDGAS 303
            MSA G+        P RERRERALRLPQQRPSGDGGGDSSTGPEGN   D D+DCRDGGRSDESTQF GAS
Sbjct:    1 MSAAGTXXXXXXXXPGRERRERALRLPQQRPSGDGGGDSSTGPEGNDNDDYDDDCRDGGRSDESTQFGGAS 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1668.4786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTM1_ECTSI1.250e-1876.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1668contigEcto-sp13_S_contig1668:8538..11976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score91.3
Seed ortholog evalue2.8e-16
Seed eggNOG ortholog2880.D7FTM1
Preferred nameTTLL5
Model size305
KEGG koko:K16601,ko:K16602
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0001578,GO:0001654,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005929,GO:0006464,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0007423,GO:0008150,GO:0008152,GO:0009566,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0016874,GO:0016879,GO:0016881,GO:0018095,GO:0018193,GO:0018200,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0032501,GO:0032502,GO:0032504,GO:0035082,GO:0036211,GO:0040011,GO:0042995,GO:0043010,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044782,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051674,GO:0051704,GO:0060041,GO:0060271,GO:0070739,GO:0070740,GO:0070925,GO:0071704,GO:0071840,GO:0071944,GO:0097722,GO:0120025,GO:0120031,GO:0120036,GO:0140096,GO:1901564
Exons2
EggNOG free text desc.protein polyglutamylation
EggNOG OGsKOG2156@1,KOG2156@2759
Cds size303
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462874.4770012-CDS-Ecto-sp13_S_contig1668:8537..85751681462874.4770012-CDS-Ecto-sp13_S_contig1668:8537..8575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1668 8538..8575 +
1681462874.4876566-CDS-Ecto-sp13_S_contig1668:11709..119741681462874.4876566-CDS-Ecto-sp13_S_contig1668:11709..11974Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1668 11710..11974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1668.4786.1prot_Ecto-sp13_S_contig1668.4786.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1668 8538..11974 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1668.4786.1

>prot_Ecto-sp13_S_contig1668.4786.1 ID=prot_Ecto-sp13_S_contig1668.4786.1|Name=mRNA_Ecto-sp13_S_contig1668.4786.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
GCERDCFETRLERGAATSLDTTTSRMESSPMSATGSTTPAAQQVPERERR
ERALRLPQQRPSGDGGGDSSTGPEGNAAADDDEDCRDGGRSDESTQFDGA
S
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mRNA from alignment at Ecto-sp13_S_contig1668:8538..11976+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1668.4786.1 ID=mRNA_Ecto-sp13_S_contig1668.4786.1|Name=mRNA_Ecto-sp13_S_contig1668.4786.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3439bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1668:8538..11976+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTGCGAGAGAGACTGCTTCGAAACCCGTCTGGAAAGGTGCGCGGAGGA
GGCCTCATTCCTAGAATCACCTGGCACACCAACGTCTTCGTTTTTCTTCC
ACAGAACCTTGAAAGAGAAAGCCCACGCTACCAGCGTTCGGCGTGCCAGC
AGAGACGACTGTTCTCTACCATGAGAGGGTGCAACCACGGAATTTGCCTG
TGCAACCACGGAATTCGCCTGTACCTGCTTCAATTCGCTCATCAGATTGT
ATTGCTCTCTTGCAACTAAACTGTTGTCTGCGGGCCAACTCTCCTCTGGC
TGCCAGACCGCGCGTGATACATGAGTACGCACGCATTGCTGCAAGCAACG
AGGGTGCTCTGAGTGGTTGGGTCTTGCACACAGGACTTGCTGCGCTCTAT
CGTGGCACTACTGCTGTGTGTACAAACGCTTGTGTTGTGAGGCCCTCCCG
GCCCGCATCAAGTTCAGGAATTAAGTGTCCCAGCTGATACATACAGGACT
AGATGTCCAGACTGTTCCATCGAACGGAGTCCCGCCGGTGTGTTGACTCG
TGTTTTCTGCTACACCTACAATTGCTCTATGCGTACGTATGCACACAGCT
TCAATCTGTCTTGTAGTACACCGTCGACCGATTGAAGACCACTGCTGTAT
ATAGTCCTGTTGATGATTTTATGATTACGCTGTGGTTCAACTGCGTCTTG
CAACAATTCTAACTTTGGTCTTGAACGTTTTGTCTGGCGTGGGAGACGGC
GAACTGCTTGAACACCATCTCCTTGCTTTTCAAATTTCTCTACTTGAAGT
ATAGACATCACAGAGCACAGAATAGAGCATACTCAGTACATATTCTGCAC
GGGAGATACCGGCGAAGGAGGCCAAGGAGCAGACTTGCGCTACAATATGA
TACGTTGGCCTAATATCTGGCCTGCAGCGGCAGAGAGTAGGGGGTTGCGG
AGGCAAGCTCCATGGTTGCCTGAACTTTGTGATTATCTACGGGGGGATGC
GCTTGTAGGTACAAGGGATCCCCCTGGACACACAGGAGCACCCCCAGGCC
AAGCTCAATCTTTGGTCGCGGACTGTTGTATGTAGAGCGTTTAAAACGTT
GTGCGTAAACCTATACTTCGAAGTATGCATACACGCTTCGTTATGCAGGA
TGTAGTAAGACATACGATATCGTACTGTAGGCCAGACTTAACCTACATAT
GTTGACCCCCGTTTTTTCCAAGATCAGTTCTTACACCGCTTTTTACGGCA
GCACAACATTGCAAGAAAAGCTGCAAACTTTTCCTGCAGCTTGTCTTCCA
AACTTCGTCAATGGAACGTTTGATGCACGCTCTTCATGGGACGAAGACAG
TTTTGTGCACGGGACTGGCGGAATGCAGAGGCGTGATCTCTTTGTTTTTT
TGCAACGGAGAAGAAGGCACGCGCCTTTCATATTGTACCGCGAAAGAACC
GATCAAAGCGTGCGGGAGAGTGTAGTTGCAACCTTTTTTCTCCACATCCA
CGATACCCCACGGCATCTTACCTCGTACCTGAAAGATGCTGGGTAGAGCT
AGCTCCCTCGGGGTGACATTGCTGTGGCTGTTGCCTTCTCCTTCGAAAAG
TTATCGCTCGAAAACCAAACGAGGCGCACACAATCCTTTCCCTGCGCACT
TGAGCCGACTGCTCTCTGACGTGGGTACTTTGGGGTCGATCAAACCGTTT
TTCCCGATGGGCACGAACCCACGGCACCAAACCTTGGGCATGAAAGATGG
AGCAGAGAGCTACCTCTCACCGAGCGGCCTTGCTATTGCTGTTGTTTCCT
CCTCCGGTAAGTTATCGGTGGATAACCAAACCCGTGCCGGTCAAAAACGT
CGAGCTTGAACTAAACGCTCGCGGCCGTTGACGGTTGTGCACAGCACTAA
CTTTTTTTCCTAGCGCATTCGGCACATCACGGCCCCAAACCTTGGCATTG
CCCAACAGCCAATGGCATCACCTCCTTCCAGATACCATTCATGAGGCAAC
TCGTTAAGTATTCGTCGAGATATCGGTGATCACAGCCTCCCCACAATCGA
TCCTGGAGAGAGTTTACGTGTGCGGTAGGGGAGGCAGCTTGACGTGAACC
GGTATAGTTTCCGCCGTGCAACTTTTCTCGCCCCTTCCAGACTCGAGAAA
AGCTGCAAAACTTTTCGGCCAGATTGCAGCTTTTCGCTCCGGAAAAAAAG
TTGCAGAACTGTTCGTGCAACTTTTAACTCCCATGCTGAAGTTACATGTT
ATTTTAAAGCCTACGTACAGTAATATAAAAACGAGTGTACTGTTTTTAGA
GTGCGACATGAATGAAAGCCTACACATTTAGGTCTTACTATGGACACACA
AAGTGCTTTACGCGAGACTGCAGCAAGCGACCCACGCAACCTTCTGATCC
TGGGCGTCAATCTTGGTCCGGGGGGGGGGGGCTCCATAGTTTTCCACTGG
GAGGCCCCTTGCCGGTGAACATCGAAGTGGGATACTTGAGGCGCCTTAGG
GCGATTTATGTCTGGCCGCCCTCTCTTAGCAACATGTTATTAGGGCGTGG
GAACGCAGGGTGTAGCAATGAAACTGACGATAATTTACACCCTTGTGGTG
GACGACAAGCACAAAGCATGGTGCTGGCTGGTATCATTCCGGCGCTTGCT
CGCCACCCGCGGGGTGTTGCTCTATACCCGGTGCACTACTGGTTTGATCC
AGCGGCGAGAGCAGCAAGCTACTTTCCTGGCGAGCGATGTACGCTTGAAC
GGGGACTCCCACCAGCGGGAACCGTATCGTACCGTTCCTGAGAATTCTAC
CCGCTACCCCCCCCCGAACCAACTCCTCTCAACGCGAACTCAACGCGGCT
ACACCGTGCCCAACCCATCCCGGTACAACCACAAATCCTTGGTGCCCCGT
GCGGAGCCGCGTAGGTTGACTACCTGCCTGACGTTGCCCCGCGAAGCTTC
CTCGAAGCCTTCTTCCCTAGCCGAGAATGGCTATACGCAACAGAGTTGCG
GAGCTTGAAATACCCCGGCTTCCTCGCGGAGACGTTTACGGAAACTACTA
CAGGGATGTTTCTGGAAACTACCAATCCTTCCCGCAACTTAAGCCTCTCT
TTGACATCCACCCTTGGCACCGACGCCGCTGCCGTCCCCGGCCCTCAACT
TGTGCCCCCGTTCCTCGCACAGGGGAGCAGCTACGTCGCTCGATACTACA
ACGTCGCGAATGGAATCGTCGCCCATGTCCGCCACGGGCAGCACCACCCC
TGCCGCTCAGCAAGTGCCGGAGCGAGAACGGCGAGAGAGAGCGCTGCGGC
TGCCGCAACAGCGACCGAGCGGCGACGGCGGCGGCGATAGCTCTACCGGT
CCCGAAGGCAACGCCGCCGCCGACGATGACGAGGATTGCCGCGATGGCGG
CCGAAGCGACGAGAGCACCCAGTTCGACGGCGCCAGCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1668:8538..11976+

>mRNA_Ecto-sp13_S_contig1668.4786.1 ID=mRNA_Ecto-sp13_S_contig1668.4786.1|Name=mRNA_Ecto-sp13_S_contig1668.4786.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1668:8538..11976+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTGCGAGAGAGACTGCTTCGAAACCCGTCTGGAAAGGGGAGCAGCTAC
GTCGCTCGATACTACAACGTCGCGAATGGAATCGTCGCCCATGTCCGCCA
CGGGCAGCACCACCCCTGCCGCTCAGCAAGTGCCGGAGCGAGAACGGCGA
GAGAGAGCGCTGCGGCTGCCGCAACAGCGACCGAGCGGCGACGGCGGCGG
CGATAGCTCTACCGGTCCCGAAGGCAACGCCGCCGCCGACGATGACGAGG
ATTGCCGCGATGGCGGCCGAAGCGACGAGAGCACCCAGTTCGACGGCGCC
AGC
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