mRNA_Ecto-sp13_S_contig16670.4779.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16670.4779.1
Unique NamemRNA_Ecto-sp13_S_contig16670.4779.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16670.4779.1 vs. uniprot
Match: D7G2S4_ECTSI (PolyA_pol domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S4_ECTSI)

HSP 1 Score: 778 bits (2009), Expect = 8.400e-279
Identity = 391/402 (97.26%), Postives = 393/402 (97.76%), Query Frame = 1
Query:    1 RFFAPPSAFLVSVARPRARDPRRVLLVGALLERNGQRLVTARWRHGMHRPAAGVRGSQRTPLSLPTQNAPPLSTLDRHSSAFSPQHPQEPDLLPVARSPNGHLRNDIKIQLTKEEDKLFKTLLEMVEKEKMGTTLRVAGGWVRDKLVGQEQGFHQRHLSKVNKMDIDIALDNCMGGDFAARLNRYLSRGKSGPGARKRMSKVALITSNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIPSINIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPRVHEALCTKVSRERVGCELDQMVRSASPLRAFELMEGMKILPMVFPLPEGFVLPMDDDVSRAYEFGMVYL 1206
            RFFAPPSAFLVSVARPR RDPRRVLLVGALLERNG  LVTARWRHG HRPAAGVRGSQRTPLSLPTQN+PPLSTLDRHSSAFSPQHPQEPDLLPVARSPNGHLRNDIKI LTKEEDKLFKTLLEMVEKEKMGTTLRVAGGWVRDKLVGQEQGFHQRHLSKVNKMDIDIALDNCMGGDFAARLNRYLSR KS PGARKRMSKVALI SNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIPSINIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDP+VHEALC KVSRERVGCELDQMVRSASPLRAFELMEGMKILPMVFPLPEGFVLPMDDDVSRAYEFGMVYL
Sbjct:   17 RFFAPPSAFLVSVARPRVRDPRRVLLVGALLERNGHSLVTARWRHGTHRPAAGVRGSQRTPLSLPTQNSPPLSTLDRHSSAFSPQHPQEPDLLPVARSPNGHLRNDIKIILTKEEDKLFKTLLEMVEKEKMGTTLRVAGGWVRDKLVGQEQGFHQRHLSKVNKMDIDIALDNCMGGDFAARLNRYLSRRKSDPGARKRMSKVALIASNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIPSINIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPKVHEALCMKVSRERVGCELDQMVRSASPLRAFELMEGMKILPMVFPLPEGFVLPMDDDVSRAYEFGMVYL 418          
BLAST of mRNA_Ecto-sp13_S_contig16670.4779.1 vs. uniprot
Match: A0A835ZFM7_9STRA (PolyA_pol domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFM7_9STRA)

HSP 1 Score: 306 bits (784), Expect = 1.390e-95
Identity = 160/309 (51.78%), Postives = 214/309 (69.26%), Query Frame = 1
Query:  325 IQLTKEEDKLFKTLLEMVEKEKMGTTLRVAGGWVRDKLVGQEQGFHQRHLSKVNKMDIDIALDNCMGGDFAARLNRYLSRGKSGPGARKRMSKVALITSNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIPSINIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPRVHEALCTKVSRERVGCELDQMVRSASPLRAFELMEGMKILPMVFPLPEGFVL---------------PMDDDVSRAYEFGMVYL 1206
            ++LT+ E  LF+ LL +VE+E MGTTLRVAGGWVRDKL+G  +   +  +   NKMD+DIALDNC+G  FA  +NR+L+  K G     + + V +++ NPEKSKHLETAT+ +  F +DFVNLRTESY  DSRIP++ IGTP +D++RRDLTIN+LFYN+NTG VED+TG+G +DL  G++ TPLP  +TLLDDPLR LR++RFASR  F +  +L+ A +DP VH AL  KVS ER+G E+DQMVRS  PLRAF L+  + + P+VF +P   +L               P+  D +  +   +VYL
Sbjct:    4 VKLTEGERALFRLLLGVVEEEAMGTTLRVAGGWVRDKLLGAARCGGEHMVGVDNKMDVDIALDNCLGKGFAETVNRHLA--KKGM----KSAAVGIVSKNPEKSKHLETATMHLLGFSIDFVNLRTESYTSDSRIPNMGIGTPEDDAYRRDLTINALFYNINTGLVEDFTGRGLTDLAAGVISTPLPAVDTLLDDPLRVLRSIRFASRFNFNMSQDLLMACKDPEVHVALAQKVSYERIGVEVDQMVRSHQPLRAFTLICDLGLAPIVFAVPPTDLLGCAAGCGLDCCDPSAPLQLDTASIFSQSLVYL 306          
BLAST of mRNA_Ecto-sp13_S_contig16670.4779.1 vs. uniprot
Match: A0A4D9CTQ7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTQ7_9STRA)

HSP 1 Score: 294 bits (753), Expect = 1.140e-89
Identity = 154/278 (55.40%), Postives = 199/278 (71.58%), Query Frame = 1
Query:  310 RNDIKIQLTKEEDKLFKTLLEMVEKEKMGTTLRVAGGWVRDKLVGQEQGFHQRHLSKVNKMDIDIALDNCMGGDFAARLNRYLS-RGKSGPGARKRMSKVALITSNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIPSINIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPRVHEALCTKVSRERVGCELDQMVRSASPLRAFELMEGMKILPMVFPLP 1140
            R    I L+  E +LF+T+L +V+ E +GTTLRVAGGWVRDK++G        H S   ++DIDIALDN MG DFAA LN +L+ RG+        +  V +I++NP KSKHLETAT+R+ +F +DFVNLRTE+Y  +SRIPS+ IG+P ED+ RRDLTIN+LFYN++TG +ED+ G+G  D+R G++RTPLP   TLLDDPLR LRAVRFASRL F +  EL+ A  DPRVH AL  KVSRER+G E+D M+RS  P RA  L+  + +   VFP+P
Sbjct:  152 RESPSIPLSPAESRLFETMLAVVKDENLGTTLRVAGGWVRDKVLG--------HWSADGEVDIDIALDNLMGSDFAAMLNGWLAKRGRQ-------VYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRERIGSEVDLMMRSGQPARAMGLIAELGLAETVFPVP 414          
BLAST of mRNA_Ecto-sp13_S_contig16670.4779.1 vs. uniprot
Match: A0A7S2V443_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V443_9STRA)

HSP 1 Score: 280 bits (716), Expect = 5.250e-85
Identity = 153/277 (55.23%), Postives = 197/277 (71.12%), Query Frame = 1
Query:  325 IQLTKEEDKLFKTLLEMVEKEKMGTTLRVAGGWVRDKLVGQE---QGFHQRHLSKVNKMDIDIALDNCMGGDFAARLNRYLSRGKSGPGARKRMSK-VALITSNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIP-SINIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPRVHEALCTKVSRERVGCELDQMVRSASPLRAFELMEGMKILPMVFPLP 1140
            +QL+ EE++LFK L+ +VE  +MGTTLRVAGGWVRDKL+ +    +    +    VN +DIDIALDN +G DFA  +N +L +         R SK VA+++ NPEKSKHLETAT+++  F +DFVNLRTE Y +DSRIP ++ IGTP ED+ RRDLTINSLFYN+NTG VED+TG G  DL   +V TPLP   TL DDPLRALRA+RFA+R GF +  +L+ A R+P+VH+AL TKVSRERVG E+  M+ + SPL A  L+  + + P VF  P
Sbjct:   67 MQLSPEEERLFKLLIRIVEDYRMGTTLRVAGGWVRDKLLHEHMSSRNVRSKRSGDVN-VDIDIALDNMLGQDFAKTINDWLKQ-------HGRTSKHVAVVSRNPEKSKHLETATMKLGGFSIDFVNLRTECYSEDSRIPETMCIGTPYEDALRRDLTINSLFYNINTGCVEDWTGAGVKDLERQVVATPLPALTTLRDDPLRALRAIRFAARFGFTMADDLLNACRNPQVHQALLTKVSRERVGSEVQNMITAQSPLMALNLIVYLGLGPSVFTTP 335          
BLAST of mRNA_Ecto-sp13_S_contig16670.4779.1 vs. uniprot
Match: W7TAJ6_9STRA (Poly A polymerase, head domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAJ6_9STRA)

HSP 1 Score: 273 bits (699), Expect = 7.690e-85
Identity = 143/248 (57.66%), Postives = 181/248 (72.98%), Query Frame = 1
Query:  310 RNDIKIQLTKEEDKLFKTLLEMVEKEKMGTTLRVAGGWVRDKLVGQEQGFHQRHLSKVNKMDIDIALDNCMGGDFAARLNRYLS-RGKSGPGARKRMSKVALITSNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIPSINIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPRVHEALCTKVSRERVGCE 1050
            R    I L+  E +LFKT+L +V+ E +GTTLRVAGGWVRDK++G        H S   ++DIDIALDN MG DFAA LN +L+ RG+        +  V +I++NP KSKHLETAT+R+ +F +DFVNLRTE+Y  +SRIPS+ IG+P ED+ RRDLTIN+LFYN++TG +ED+ G+G  D+R G++RTPLP   TLLDDPLR LRAVRFASRL F +  EL+ A  DPRVH AL  KVSRER+G E
Sbjct:  177 RESPSIPLSPAESRLFKTMLAVVKDENLGTTLRVAGGWVRDKVLG--------HWSADGEVDIDIALDNLMGSDFAAMLNGWLAKRGRQ-------VYNVGIISANPTKSKHLETATMRVGSFSIDFVNLRTEAYTDESRIPSMGIGSPEEDAMRRDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRERIGSE 409          
BLAST of mRNA_Ecto-sp13_S_contig16670.4779.1 vs. uniprot
Match: A0A7S1V6D0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V6D0_9STRA)

HSP 1 Score: 283 bits (725), Expect = 9.660e-85
Identity = 163/334 (48.80%), Postives = 209/334 (62.57%), Query Frame = 1
Query:  292 SPNGH-----LRNDIKIQLTKEEDKLFKTLLEMVEKEKMGTTLRVAGGWVRDKLVGQEQ---------------GFHQRHLSKVNK---------------------MDIDIALDNCMGGDFAARLNRYLSRGKSGPGARKRMSKVALITSNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIPSI-NIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPRVHEALCTKVSRERVGCELDQMVRSASPLRAFELMEGMKILPMVFPLPEGFVLPMDD 1167
            S N H     + NDI I LTK E +LFK L ++ ++ K+ T+LRVAGGWVRDKL+  E+               G HQR  SK +K                     +DIDIALD+ +G +FA  LN YL+        R+ +S V ++  NPEKSKHLETAT+++  FW+DFVNLR E Y QDSRIP +  IG+P EDS+RRDLTINSLFYN+NT  VED+TG G  DL+ G+V TPL P  TLLDDPLR +R+VRFA+RL FR+   L+ A +D RV  AL  KVSRER+GCE+D M RS  P+ A  L+  + +   VFPL +  VLP+ +
Sbjct:  152 STNNHHVTPPVSNDIDISLTKAETELFKLLRQVTKQSKLKTSLRVAGGWVRDKLLATEEFREYHTSTLNYNNPKGQHQRLTSKFHKPAAQASMGRQGTKVISSSPQPVDIDIALDDMLGREFADSLNEYLTMK-----GRETIS-VGVVLKNPEKSKHLETATMKVGPFWIDFVNLRAEEYTQDSRIPDLMRIGSPAEDSYRRDLTINSLFYNINTQKVEDWTGHGIQDLKRGVVSTPLAPLTTLLDDPLRVMRSVRFAARLRFRMDDALVRAAKDTRVKNALAQKVSRERIGCEVDLMFRSPDPVGAMRLLNTLNLTDTVFPLSQ--VLPLQE 477          
BLAST of mRNA_Ecto-sp13_S_contig16670.4779.1 vs. uniprot
Match: UPI0006449D42 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006449D42)

HSP 1 Score: 279 bits (713), Expect = 1.460e-84
Identity = 144/285 (50.53%), Postives = 192/285 (67.37%), Query Frame = 1
Query:  301 GHLRNDIKIQLTKEEDKLFKTLLEMVEKEKMGTTLRVAGGWVRDKLVGQEQGFHQRHLSKVNKMDIDIALDNCMGGDFAARLNRYLSRGKSGPGARKRMSKVALITSNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIPSINIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPRVHEALCTKVSRERVGCELDQMVRSASPLRAFELMEGMKILPMVFPLPEGFVL 1155
            G+    + + +++ E +LF+ LL++VEK K GTTLRVAGGWVRDKL G +              DIDIALDN MG  FA+ +N+YL              ++ +I SNP +SKHLETAT+RI + W+DFVNLR+E+Y ++SRIP+I IGTP ED+FRRDLTINSLFYN+N   +ED+TG G +DL  G+VRTPLPP  T LDDPLR LR++RFA+RL + +  +L+EA   P+V EAL +KVS ERVG EL+ M+    P  A  L+  + +   +F LPEG  +
Sbjct:   96 GNTGETVPLYISETERRLFEVLLQVVEKSKCGTTLRVAGGWVRDKLRGDDSS------------DIDIALDNLMGEAFASLVNQYLQDHNQ------ETHRIGVIQSNPSQSKHLETATVRIFDMWIDFVNLRSETYTEESRIPTIQIGTPQEDAFRRDLTINSLFYNINENKIEDFTGNGINDLMCGIVRTPLPPQTTFLDDPLRVLRSIRFATRLYYAIDHKLVEAASSPKVKEALKSKVSHERVGIELEGMLSGPRPDLAIHLIHDLGLFDHIFSLPEGVTI 362          
BLAST of mRNA_Ecto-sp13_S_contig16670.4779.1 vs. uniprot
Match: A0A2V0NUI1_9CHLO (PolyA_pol domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NUI1_9CHLO)

HSP 1 Score: 275 bits (703), Expect = 1.450e-83
Identity = 142/273 (52.01%), Postives = 185/273 (67.77%), Query Frame = 1
Query:  325 IQLTKEEDKLFKTLLEMVEKEKMGTTLRVAGGWVRDKLVGQEQGFHQRHLSKVNKMDIDIALDNCMGGDFAARLNRYL-SRGKSGPGARKRMSKVALITSNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIPSINIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPRVHEALCTKVSRERVGCELDQMVRSASPLRAFELMEGMKILPMVFPLP 1140
            I LT EE +LF  LLE       GTTLR AGGWVRDKL+G E              DID+ALDN +G +FA ++N YL S+GK          K A+I SNPE+SKHLETA +++++ W+D VNLR+E+Y + SRIP +  GTP++D+ RRD T+N+LFYN+N G VED TGKG +DLR GL+RTPLP  ET LDDPLR LRAVRFA+R GF +HPE++EA    +V  AL  K+SRER+G EL+ M    +P  A  L++ +++ P+VF  P
Sbjct:    8 ISLTAEEQELFSLLLEAANHAGTGTTLRCAGGWVRDKLLGLES------------KDIDVALDNMLGREFADKVNDYLQSQGKE-------THKAAVIHSNPEQSKHLETARMKVNDLWIDLVNLRSETYAEGSRIPKMEFGTPLQDAERRDFTVNALFYNLNAGAVEDLTGKGLTDLRAGLLRTPLPASETFLDDPLRVLRAVRFATRFGFELHPEILEAAAGEKVRSALGGKISRERIGTELEGMFNGRAPTLAVLLLDRLRLFPVVFAAP 261          
BLAST of mRNA_Ecto-sp13_S_contig16670.4779.1 vs. uniprot
Match: A0A0D2MXN4_9CHLO (PolyA_pol domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MXN4_9CHLO)

HSP 1 Score: 273 bits (699), Expect = 4.540e-83
Identity = 144/294 (48.98%), Postives = 193/294 (65.65%), Query Frame = 1
Query:  325 IQLTKEEDKLFKTLLEMVEKEKMGTTLRVAGGWVRDKLVGQEQGFHQRHLSKVNKMDIDIALDNCMGGDFAARLNRYLSRGKSGPGARKRMSKVALITSNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIPSINIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPRVHEALCTKVSRERVGCELDQMVRSASPLRAFELMEGMKILPMVFPLP--------EGFVLPMDDDVSRA 1182
            I LT+EE +LF  LLE V+     TTLR AGGWVRDKL+G+E              DID+ALDN +G DFA +  R ++      G  +   K A+I SNP++SKHLETA +R+++ W+D VNLR+E+Y + SRIP++  GTP++D+ RRD TIN+LFYN+N G VED TG+G +DLR GL+RTPLP  ET LDDPLR LRAVRFA+R GF +HPE+++A    +V  AL  K+SRER+G EL+ M    +P  A  L+E +++ P+VF  P        EGF  P    ++ A
Sbjct:    8 ISLTQEEQELFTLLLESVKHAGTDTTLRCAGGWVRDKLLGKES------------KDIDVALDNMLGKDFADKARRMVNDYLQSQG--RETKKAAVIHSNPDQSKHLETARMRVNDLWIDLVNLRSETYAEGSRIPTMEFGTPLQDAERRDFTINALFYNLNQGAVEDLTGRGLADLRAGLLRTPLPASETFLDDPLRVLRAVRFATRFGFDLHPEILQAAASDKVRTALGQKISRERIGTELEGMFNGTAPSLAVLLLERLRLFPVVFAAPPQNTQQLGEGFGAPCASAIAAA 287          
BLAST of mRNA_Ecto-sp13_S_contig16670.4779.1 vs. uniprot
Match: D3BMI6_POLPP (tRNA nucleotidyltransferase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BMI6_POLPP)

HSP 1 Score: 271 bits (694), Expect = 5.090e-82
Identity = 145/285 (50.88%), Postives = 187/285 (65.61%), Query Frame = 1
Query:  301 GHLRNDIKIQLTKEEDKLFKTLLEMVEKEKMGTTLRVAGGWVRDKLVGQEQGFHQRHLSKVNKMDIDIALDNCMGGDFAARLNRYLSRGKSGPGARKRMSKVALITSNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIPSINIGTPMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPRVHEALCTKVSRERVGCELDQMVRSASPLRAFELMEGMKILPMVFPLPEGFVL 1155
            G     + + +TK E +LF+TLL++VE+ K GT LRVAGGWVRDKL G        H S     DIDIALDN MG  FA+ +N+YL   K          ++ +I SNP +SKHLETAT+RI + W+DFVNLR+E+Y   SRIP I IGTP +D++RRDLTINSLFYN+N   +ED+TG G  DL+ G+VRTPLPP  T LDDPLR LR++RFA+RL + +  +L+EA     V +AL +KVS ERVG ELD M+    P  A  L+    +   +F LPEG  +
Sbjct:   75 GESGETVPLNITKVEQQLFQTLLQVVEQTKCGTVLRVAGGWVRDKLRGD-------HSS-----DIDIALDNMMGEAFASLVNQYLKDHKQ------ETHRIGVIQSNPAQSKHLETATVRIYDMWIDFVNLRSETYSDHSRIPEITIGTPEQDAYRRDLTINSLFYNINENKIEDFTGNGVDDLKCGIVRTPLPPQTTFLDDPLRVLRSIRFATRLYYAIDHKLVEAASSSTVKDALASKVSHERVGIELDGMLSGPRPDLAIHLINHFGLFDHIFSLPEGVTI 341          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16670.4779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2S4_ECTSI8.400e-27997.26PolyA_pol domain-containing protein n=2 Tax=Ectoca... [more]
A0A835ZFM7_9STRA1.390e-9551.78PolyA_pol domain-containing protein n=1 Tax=Tribon... [more]
A0A4D9CTQ7_9STRA1.140e-8955.40Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2V443_9STRA5.250e-8555.23Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TAJ6_9STRA7.690e-8557.66Poly A polymerase, head domain protein n=1 Tax=Nan... [more]
A0A7S1V6D0_9STRA9.660e-8548.80Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
UPI0006449D421.460e-8450.53hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A2V0NUI1_9CHLO1.450e-8352.01PolyA_pol domain-containing protein n=1 Tax=Raphid... [more]
A0A0D2MXN4_9CHLO4.540e-8348.98PolyA_pol domain-containing protein n=1 Tax=Monora... [more]
D3BMI6_POLPP5.090e-8250.88tRNA nucleotidyltransferase n=1 Tax=Polysphondyliu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16670contigEcto-sp13_S_contig16670:2..3763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score781.9
Seed ortholog evalue1.4e-223
Seed eggNOG ortholog2880.D7G2S4
Model size1206
KEGG rclassRC00078
KEGG koko:K00974
KEGG ReactionR09382,R09383,R09384,R09386
KEGG Pathwayko03013,map03013
Hectar predicted targeting categorymitochondrion
Exons6
EggNOG free text desc.CTP:tRNA cytidylyltransferase activity
EggNOG OGsCOG0617@1,KOG2159@2759
Ec32 ortholog descriptionPoly A polymerase, head domain
Ec32 orthologEc-11_003320.1
EC2.7.7.72
Cds size1206
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16670.4779.1prot_Ecto-sp13_S_contig16670.4779.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16670 2..3763 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462874.0630403-CDS-Ecto-sp13_S_contig16670:1..1841681462874.0630403-CDS-Ecto-sp13_S_contig16670:1..184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16670 2..184 -
1681462874.0763056-CDS-Ecto-sp13_S_contig16670:870..11201681462874.0763056-CDS-Ecto-sp13_S_contig16670:870..1120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16670 871..1120 -
1681462874.0868077-CDS-Ecto-sp13_S_contig16670:1558..17671681462874.0868077-CDS-Ecto-sp13_S_contig16670:1558..1767Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16670 1559..1767 -
1681462874.0970428-CDS-Ecto-sp13_S_contig16670:2229..24211681462874.0970428-CDS-Ecto-sp13_S_contig16670:2229..2421Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16670 2230..2421 -
1681462874.1138294-CDS-Ecto-sp13_S_contig16670:3014..31381681462874.1138294-CDS-Ecto-sp13_S_contig16670:3014..3138Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16670 3015..3138 -
1681462874.1286795-CDS-Ecto-sp13_S_contig16670:3515..37631681462874.1286795-CDS-Ecto-sp13_S_contig16670:3515..3763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16670 3516..3763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16670.4779.1

>prot_Ecto-sp13_S_contig16670.4779.1 ID=prot_Ecto-sp13_S_contig16670.4779.1|Name=mRNA_Ecto-sp13_S_contig16670.4779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=402bp
RFFAPPSAFLVSVARPRARDPRRVLLVGALLERNGQRLVTARWRHGMHRP
AAGVRGSQRTPLSLPTQNAPPLSTLDRHSSAFSPQHPQEPDLLPVARSPN
GHLRNDIKIQLTKEEDKLFKTLLEMVEKEKMGTTLRVAGGWVRDKLVGQE
QGFHQRHLSKVNKMDIDIALDNCMGGDFAARLNRYLSRGKSGPGARKRMS
KVALITSNPEKSKHLETATLRIDNFWVDFVNLRTESYVQDSRIPSINIGT
PMEDSFRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETL
LDDPLRALRAVRFASRLGFRVHPELMEAGRDPRVHEALCTKVSRERVGCE
LDQMVRSASPLRAFELMEGMKILPMVFPLPEGFVLPMDDDVSRAYEFGMV
YL
back to top

mRNA from alignment at Ecto-sp13_S_contig16670:2..3763-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16670.4779.1 ID=mRNA_Ecto-sp13_S_contig16670.4779.1|Name=mRNA_Ecto-sp13_S_contig16670.4779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16670:2..3763- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTTCTTTGCCCCTCCAAGCGCGTTCTTGGTGTCGGTGGCACGGCCAAG AGCGAGAGATCCGAGGCGCGTGTTGCTGGTCGGGGCCCTGCTGGAGAGGA ACGGGCAGAGGTTGGTCACGGCGCGGTGGCGGCACGGCATGCACAGGCCC GCCGCCGGCGTGCGCGGGTCTCAGCGCACGCCGTTGAGCCTGCCCACCCA GAACGCGCCCCCGCTGTCGACTCTCGACCGCCACAGCTCGGCATTCAGGT ACACGGGGGGGTTCGCGCGACCGTGGCGCCTCCGGTCACGCACCGAAGAA CATTTGGCGGCGTTTTCTTTTTTAGTGAAGCCTTTCTAGTTATCCTTGTC CGTGTTTTTTTTCGCACGTGGCACGCCGCGTCGGTATCGGTCTTCGGGCC GCGGCCACGATCGCGGGAAATACAGCTCGAGAGAGATTTTATTTTCAAAA GACGAAGTAATAGAGCACCGAATCAGGTGGATCGTTCCTCTCGCGCGTGC CAAGTTCGGCAGACTTTCGCAGCTCCCACCCAACGGTTGTAAGGCACACC AGTTCTCCTGCCGTCGTGACGTACTACTTCTTCTTGTTTACCCCGCTGGC TCTTTTGATTCCATGGCGTTGTCAGCCCTCAGCACCCTCAGGAGCCGGAC CTGCTGCCCGTAGCGAGGAGCCCAAACGGGCACTTGCGAAACGACATCAA GATACAACTCACGAAGGAGGAGGACAAGCTCTTCAAAACGCTGCTGGAGG TAAGACCGGTACAGCTCGTACACCTCACGGCAGCACATGACGCCGTGTAG CCGTGTAGTAGTCAATAGGCCGGGACGATCTGGAGGCGAGCATATGTAGG ACAATTGCCAAGCAAACCGAAGGTGCAAGGTTTGGTTCTTGTCCCTTGTA AAAACCATCGGTGTGCCCCCCCCCCCCCCCCCGCGGACACACCGCGTTTT TAGCACCTAGAGCACACGGCAGGCAGTGTGCGAGAAAAAATATACAAAAC TCGAATCTGCCGGGAGCTCTTGTGCACTACCACGGAGCACTAGGCGATTC CGTCTTTTTTACAAGAAACGTCGAGAGCAGTTTTTGGATGAAAGTTCTGC GATCTGCTTCAAAAGTTCCACATCCACGGGTCAATACCAGCAGGCGCCAC CTTCCTGTGTCGCACAGCATACAGAAGAGCGTCGCAGGTGCTGCCGTACT CATAGAACGGATACCTAAATACCATGGGTATTTCGCACACCCTCCAAACG CCGAGTGTTTTTTTTTTTTTTTTTCTCGCACGCTGTCTGCCGTGTGCCCT GGTTGCTAAAAACGCGGCGTGCCTGGGGGCGGGGGCACACAGATGGTCGA GAAGGAGAAGATGGGGACCACGCTCCGGGTGGCCGGGGGCTGGGTGCGGG ATAAGCTGGTGGGGCAAGAGCAAGGGTTTCACCAGCGACACCTGTCCAAG GTCAACAAGATGGACATCGACATCGCGCTCGACAACTGCATGGGGGGAGA CTTCGCCGCAAGACTGAACCGCTACCTTTCTCGGGTAAGAGCCCTCACGT TATTTTGGCGGGGCGTAGGTGCCGTTGGTTGCGCGAGCGGTCGGTTGTTG GTACTGCTGGAGGTTATGTTTGGGTCCCTTGCTCTCGAGGTCGATTGGCC CCCAAGAGTTAGCCGATTCTGTTGCCTTCACAGAGGTTGCTTATTGGAAT CGTTTTCGTTGAAAAACACAACATTTTTTCTCCTATATCTTCCACAGATA AAAATCCGGGATGTGTTAGCAATGAACTCATAGTTATGTATGACGAACAG CCTGCATTTCTTGATTGGGAGGTATATGTTGGTGGTAGTGTCGTGTTCTT TTTTTTTGATCGGTCTTGGCTCTTGACTCCGTGCCGCAACAACAAATCGA CGCTCACGTGTTGAACACGCATGCTTCCCCACCCCATCCCTTCGCCCCAC ATGCCCCTCTCCGCCGCCGCACGTCTTCACTTGGGTCTCTCCGCAGGGGA AGAGCGGCCCAGGTGCAAGAAAGAGGATGAGCAAAGTGGCCCTCATTACC TCCAACCCTGAGAAATCGAAACACTTGGAGACGGCCACCCTGAGAATCGA CAACTTTTGGGTGGACTTCGTTAACCTTCGGACAGAGTCGTACGTGCAGG ACAGCCGCATCCCGAGCATCAACATCGGGACGCCCATGGAGGACTCGTTC CGAAGGTGCGTGTTTGAGGACGGTGTGCTGCTGCTGCTGGAGGATATGTC TGAGCTAGGTTTTTTTTGCTCGACTCTGCTGTTGTCCGTACGCGCGCGCT CCGGTTTTGTCACCGCACACGGAGCTGGGAGCTGGGAGCGATGGAAAAAC GTACACACGCACACACACATATAAAGCCTCCGCCATGACACGTCCTCGCG GGGTCCCAGATCATGGCCGCCTTTCATCGGTCACCCGGTCAGCGCGATCG ATGCCAAGAAGAAAACACACACACACACACACACACAAGCGATGGTTGTA GTTGTACGAAAAAATATACTGAAAAGTGTAGTGCACGTCTAACCACGAAA AATGGGGGGACTGTCGCCATAATAAATACTTGTGAGTAGGACGAAACGGC ACACACACACACGCACTCGCCTCCCTCGCGCACCTCCTCGCAGAGACCTC ACGATCAACTCCCTGTTCTACAACGTCAACACGGGCACCGTCGAGGACTA CACGGGTAAGGGGACCTCCGACCTCCGCCTGGGCCTGGTGCGTACCCCGC TCCCCCCCTGCGAGACCCTCCTCGATGACCCCCTGCGGGCGCTGCGCGCG GTGCGGTTCGCCAGCCGGCTGGGCTTCAGGGTGCACCCGGAGCTGATGGA GGCGGGGAGAGACCCCAGAGTGCACGAGGCGCTATGCACGAAGGTATGCA CACAGCAGGCGATGGTGTTGTGTAGCATGTAGAAAGAGTGCTGTTGACCA CCGGGTTCCAAATAGCTGTTGGCCTTTCCGTGCTCCATGGTCGTGTTTTT TCTGAGATGTCTTTTTGCGGTACGCACACGATTTGCAAATCTTTGTTCCG CGGTCGGCACACTCGTACCGAAACGACACGCGGCACACACCGCACCCGGT CAGTCAAGCTTTTGCAGGTCGACATGAGCCCAAAGCATAAAACTATTCTG AGATCACCATAAGCCCAAAGCATTAAACCTCTCTGAGATCAAGTAATCGG ATGACGTAGTTTACGACACGCCCCACACAGTAGTACCGAGCCCGATGATA CACAGTGTTTATCAATGCCCAAAACGTTAGAAAACACCGTGGGCTGTTTT CTGTGTCGTGTGCGGTGGGCGTCTCAAAAGAGTGCCCTCGCGCTGCTGTT GTTGCTTCCCTCCTCACCCACACACCGACGTCTCTTCAATGGGTTGGCCG GTTAGCGGGGTCCCAATGTATGGCATTTGTACTGTAGGAGCATTTTTCGC TGTGCTTTCAACCTCCATGCGACTTGCGTGATTTCATTGGTAAGTAGGTT AGCACGTTCGATGCTAAGAAAAAAAACACAAAAACCCGCAACACATACAT GCGCGCGACGCTGTGTTGGCCACCCTCAGGTCAGCCGCGAGCGGGTGGGG TGCGAGTTGGACCAGATGGTGCGGTCTGCGTCTCCTCTCCGGGCGTTCGA GTTGATGGAGGGCATGAAGATCTTGCCGATGGTGTTCCCTCTGCCGGAAG GGTTTGTTCTGCCCATGGATGATGACGTTTCCCGCGCGTATGAGTTCGGG ATGGTGTACCTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16670:2..3763-

>mRNA_Ecto-sp13_S_contig16670.4779.1 ID=mRNA_Ecto-sp13_S_contig16670.4779.1|Name=mRNA_Ecto-sp13_S_contig16670.4779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16670:2..3763- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTTCTTTGCCCCTCCAAGCGCGTTCTTGGTGTCGGTGGCACGGCCAAG
AGCGAGAGATCCGAGGCGCGTGTTGCTGGTCGGGGCCCTGCTGGAGAGGA
ACGGGCAGAGGTTGGTCACGGCGCGGTGGCGGCACGGCATGCACAGGCCC
GCCGCCGGCGTGCGCGGGTCTCAGCGCACGCCGTTGAGCCTGCCCACCCA
GAACGCGCCCCCGCTGTCGACTCTCGACCGCCACAGCTCGGCATTCAGCC
CTCAGCACCCTCAGGAGCCGGACCTGCTGCCCGTAGCGAGGAGCCCAAAC
GGGCACTTGCGAAACGACATCAAGATACAACTCACGAAGGAGGAGGACAA
GCTCTTCAAAACGCTGCTGGAGATGGTCGAGAAGGAGAAGATGGGGACCA
CGCTCCGGGTGGCCGGGGGCTGGGTGCGGGATAAGCTGGTGGGGCAAGAG
CAAGGGTTTCACCAGCGACACCTGTCCAAGGTCAACAAGATGGACATCGA
CATCGCGCTCGACAACTGCATGGGGGGAGACTTCGCCGCAAGACTGAACC
GCTACCTTTCTCGGGGGAAGAGCGGCCCAGGTGCAAGAAAGAGGATGAGC
AAAGTGGCCCTCATTACCTCCAACCCTGAGAAATCGAAACACTTGGAGAC
GGCCACCCTGAGAATCGACAACTTTTGGGTGGACTTCGTTAACCTTCGGA
CAGAGTCGTACGTGCAGGACAGCCGCATCCCGAGCATCAACATCGGGACG
CCCATGGAGGACTCGTTCCGAAGAGACCTCACGATCAACTCCCTGTTCTA
CAACGTCAACACGGGCACCGTCGAGGACTACACGGGTAAGGGGACCTCCG
ACCTCCGCCTGGGCCTGGTGCGTACCCCGCTCCCCCCCTGCGAGACCCTC
CTCGATGACCCCCTGCGGGCGCTGCGCGCGGTGCGGTTCGCCAGCCGGCT
GGGCTTCAGGGTGCACCCGGAGCTGATGGAGGCGGGGAGAGACCCCAGAG
TGCACGAGGCGCTATGCACGAAGGTCAGCCGCGAGCGGGTGGGGTGCGAG
TTGGACCAGATGGTGCGGTCTGCGTCTCCTCTCCGGGCGTTCGAGTTGAT
GGAGGGCATGAAGATCTTGCCGATGGTGTTCCCTCTGCCGGAAGGGTTTG
TTCTGCCCATGGATGATGACGTTTCCCGCGCGTATGAGTTCGGGATGGTG
TACCTC
back to top