mRNA_Ecto-sp13_S_contig16663.4777.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16663.4777.1
Unique NamemRNA_Ecto-sp13_S_contig16663.4777.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16663.4777.1 vs. uniprot
Match: D7FU58_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU58_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 5.370e-18
Identity = 43/67 (64.18%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   82 VLLLLPGEAPASGCISCQGDGRDQATYWLLMWLRTRALANFVSFDTTMYFDVYAPHLLRTQRERKSR 282
            VL L PGEAPASGCISCQGDGRDQATYWLLMWLRT  LANF+     + + V+   ++R Q E K R
Sbjct:    5 VLRLWPGEAPASGCISCQGDGRDQATYWLLMWLRTCILANFLGRCAKLAWTVFVL-MVRRQLEAKRR 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16663.4777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU58_ECTSI5.370e-1864.18Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16663contigEcto-sp13_S_contig16663:2235..2731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size497
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003350.1
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.9404185-CDS-Ecto-sp13_S_contig16663:2236..27311681462873.9404185-CDS-Ecto-sp13_S_contig16663:2236..2731Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16663 2237..2731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16663.4777.1prot_Ecto-sp13_S_contig16663.4777.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16663 2237..2731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16663.4777.1

>prot_Ecto-sp13_S_contig16663.4777.1 ID=prot_Ecto-sp13_S_contig16663.4777.1|Name=mRNA_Ecto-sp13_S_contig16663.4777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
LTNHTAVDTTHDVTTTSRTHAYGSRTTVLLLLPGEAPASGCISCQGDGRD
QATYWLLMWLRTRALANFVSFDTTMYFDVYAPHLLRTQRERKSRICLVGA
LAHTLDKAISRQKREACTAEFSALLHHWLICKIMPVCTPLLSMLSPGHPG
RGIPFCFTLGRLLPQ
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mRNA from alignment at Ecto-sp13_S_contig16663:2235..2731-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16663.4777.1 ID=mRNA_Ecto-sp13_S_contig16663.4777.1|Name=mRNA_Ecto-sp13_S_contig16663.4777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=497bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16663:2235..2731- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGACAAATCACACCGCAGTGGACACGACTCATGACGTCACTACCACCTC
CCGCACACATGCCTATGGATCGCGTACTACGGTATTACTTTTGTTGCCAG
GCGAGGCTCCCGCTTCTGGCTGCATTAGCTGCCAGGGAGATGGCCGAGAC
CAAGCCACCTACTGGCTACTCATGTGGTTGAGGACTCGCGCCTTGGCAAA
TTTTGTGAGTTTCGACACAACAATGTATTTCGACGTTTATGCTCCGCATT
TACTTCGCACCCAGCGAGAGCGAAAATCGCGCATATGTTTAGTGGGTGCA
CTTGCGCATACACTTGACAAAGCCATATCGCGCCAAAAAAGGGAGGCGTG
CACCGCGGAATTTAGCGCTCTATTACACCATTGGCTCATCTGCAAAATCA
TGCCTGTTTGCACACCATTGCTGAGCATGCTATCGCCAGGTCATCCGGGA
CGGGGCATCCCTTTTTGTTTTACTCTCGGGAGGCTCTTACCCCAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16663:2235..2731-

>mRNA_Ecto-sp13_S_contig16663.4777.1 ID=mRNA_Ecto-sp13_S_contig16663.4777.1|Name=mRNA_Ecto-sp13_S_contig16663.4777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16663:2235..2731- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGACAAATCACACCGCAGTGGACACGACTCATGACGTCACTACCACCTC
CCGCACACATGCCTATGGATCGCGTACTACGGTATTACTTTTGTTGCCAG
GCGAGGCTCCCGCTTCTGGCTGCATTAGCTGCCAGGGAGATGGCCGAGAC
CAAGCCACCTACTGGCTACTCATGTGGTTGAGGACTCGCGCCTTGGCAAA
TTTTGTGAGTTTCGACACAACAATGTATTTCGACGTTTATGCTCCGCATT
TACTTCGCACCCAGCGAGAGCGAAAATCGCGCATATGTTTAGTGGGTGCA
CTTGCGCATACACTTGACAAAGCCATATCGCGCCAAAAAAGGGAGGCGTG
CACCGCGGAATTTAGCGCTCTATTACACCATTGGCTCATCTGCAAAATCA
TGCCTGTTTGCACACCATTGCTGAGCATGCTATCGCCAGGTCATCCGGGA
CGGGGCATCCCTTTTTGTTTTACTCTCGGGAGGCTCTTACCCCAG
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