mRNA_Ecto-sp13_S_contig16661.4776.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16661.4776.1
Unique NamemRNA_Ecto-sp13_S_contig16661.4776.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16661.4776.1 vs. uniprot
Match: A0A6H5KDH4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH4_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 2.510e-62
Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    4 MVAMDAGHLKGSWKGVMY-VLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKESPAALRAVLPQAPWRACVRHLITN 303
            MVAMDAGHLKGSWKGVMY VLCMH+S NKIIHV+TVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHK SPAALRAV+PQAPW ACVRHLITN
Sbjct:    1 MVAMDAGHLKGSWKGVMYDVLCMHESKNKIIHVNTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKGSPAALRAVVPQAPWSACVRHLITN 101
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BLAST of mRNA_Ecto-sp13_S_contig16661.4776.1 vs. uniprot
Match: A0A6H5KQH4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH4_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 3.340e-62
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 1 
Query:    4 MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKESPAALRAVLPQAPWRACVRHLITN 303
            MVAMDAGHL+ SWKGVMY LCMH+SNNKIIHVSTVLADKENATNYKFLLQQTCRNEHM RLLSSGEVTF+IDGHK SPAALR VLPQAPWRACVRHL+TN
Sbjct:    1 MVAMDAGHLRDSWKGVMYALCMHNSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMQRLLSSGEVTFYIDGHKGSPAALRPVLPQAPWRACVRHLVTN 100
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BLAST of mRNA_Ecto-sp13_S_contig16661.4776.1 vs. uniprot
Match: A0A6H5JC04_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC04_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 6.680e-62
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 1 
Query:    4 MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKESPAALRAVLPQAPWRACVRHL 294
            MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHK SPAALRAVLPQAPWRACVRHL
Sbjct:  247 MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKGSPAALRAVLPQAPWRACVRHL 343
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BLAST of mRNA_Ecto-sp13_S_contig16661.4776.1 vs. uniprot
Match: A0A6H5KCE5_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCE5_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 8.120e-62
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:    4 MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKESPAALRAVLPQAPWRACVRHLITN 303
            MVAMDAGHLKGSWKGVMY LCMHDSNNKIIHVSTVLADKE ATNY+FLLQQT RNEHMHRLLSSGEVTFFIDGHK SPAALRAV+PQAPWRACVRHLITN
Sbjct:    1 MVAMDAGHLKGSWKGVMYFLCMHDSNNKIIHVSTVLADKEIATNYRFLLQQTFRNEHMHRLLSSGEVTFFIDGHKGSPAALRAVVPQAPWRACVRHLITN 100
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BLAST of mRNA_Ecto-sp13_S_contig16661.4776.1 vs. uniprot
Match: A0A6H5K7Q3_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Q3_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 9.490e-61
Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 1 
Query:    4 MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKESPAALRAVLPQAPWRACVRHLITN 303
            MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIH STV+ADKE+ATN+KFLLQQTCRNEHMHRLLSSGEVTFFIDGHK SPAALRAV+PQAPWRACVR LITN
Sbjct:   25 MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHFSTVIADKEHATNFKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKGSPAALRAVVPQAPWRACVRQLITN 124
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BLAST of mRNA_Ecto-sp13_S_contig16661.4776.1 vs. uniprot
Match: A0A6H5L9F2_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9F2_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.560e-60
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 1 
Query:    4 MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKESPAALRAVLPQAPWRACVRHLITN 303
            MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHV+TVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTF IDGHK SPAALRAV+PQAPWRACVRHLITN
Sbjct:   79 MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVTTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFVIDGHKGSPAALRAVVPQAPWRACVRHLITN 178
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BLAST of mRNA_Ecto-sp13_S_contig16661.4776.1 vs. uniprot
Match: D7G6Q0_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q0_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 8.530e-58
Identity = 93/101 (92.08%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    1 QMVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKESPAALRAVLPQAPWRACVRHLITN 303
            ++VAMDAGHLKGSW GVMYVLCMHDSNNKIIHVSTVLADKENATNY+FLLQQTCRNEHM RLLSSGEVTF+IDGHK SPAALRAVLPQAPWRACVRH ITN
Sbjct:  160 KIVAMDAGHLKGSWHGVMYVLCMHDSNNKIIHVSTVLADKENATNYEFLLQQTCRNEHMQRLLSSGEVTFYIDGHKGSPAALRAVLPQAPWRACVRHFITN 260
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16661.4776.1 vs. uniprot
Match: D7FMJ7_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ7_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 2.150e-53
Identity = 85/100 (85.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:    4 MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKESPAALRAVLPQAPWRACVRHLITN 303
            +VA+DAGHL+GSW GVMYVLCMHDSNNKI HVSTVLADKENA NYKFLLQ+ C+NEHM RLLSSGEVTF+IDGHK SPAALR VLPQAPW ACVRHLIT+
Sbjct:   17 VVALDAGHLRGSWNGVMYVLCMHDSNNKITHVSTVLADKENAANYKFLLQEICQNEHMQRLLSSGEVTFYIDGHKGSPAALRVVLPQAPWCACVRHLITD 116
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16661.4776.1 vs. uniprot
Match: A0A6H5KK24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK24_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.690e-49
Identity = 80/100 (80.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    4 MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKESPAALRAVLPQAPWRACVRHLITN 303
            M+AMDAGHLKGSWKGVMYVLCMHDSNNKIIHVST                 TCRNEHMHR LSSGEVTFFIDGHK SPAALRAVLPQAPWRACVRHLITN
Sbjct:    1 MMAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVST-----------------TCRNEHMHRHLSSGEVTFFIDGHKGSPAALRAVLPQAPWRACVRHLITN 83
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16661.4776.1 vs. uniprot
Match: A0A6H5K9J4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J4_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 2.620e-48
Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:   52 MYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQQTCRNEHMHRLLSSGEVTFFIDGHKESPAALRAVLPQAPWRACVRHLITN 303
            MY+LCMHDSNNKIIHVSTVLADKENATNYKFLLQQ CRNEHMHRLLSSGEVTFFIDGHK SPAALRAVLPQ PWRACVRHLITN
Sbjct:    1 MYILCMHDSNNKIIHVSTVLADKENATNYKFLLQQICRNEHMHRLLSSGEVTFFIDGHKGSPAALRAVLPQTPWRACVRHLITN 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16661.4776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KDH4_9PHAE2.510e-6293.07MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KQH4_9PHAE3.340e-6291.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JC04_9PHAE6.680e-6298.97MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KCE5_9PHAE8.120e-6294.00MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5K7Q3_9PHAE9.490e-6193.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L9F2_9PHAE1.560e-6096.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G6Q0_ECTSI8.530e-5892.08MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FMJ7_ECTSI2.150e-5385.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KK24_9PHAE1.690e-4980.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9J4_9PHAE2.620e-4895.24MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16661contigEcto-sp13_S_contig16661:3531..3833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size303
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.9082208-CDS-Ecto-sp13_S_contig16661:3530..38301681462873.9082208-CDS-Ecto-sp13_S_contig16661:3530..3830Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16661 3531..3830 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.9164417-UTR-Ecto-sp13_S_contig16661:3830..38331681462873.9164417-UTR-Ecto-sp13_S_contig16661:3830..3833Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16661 3831..3833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16661.4776.1prot_Ecto-sp13_S_contig16661.4776.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16661 3531..3830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16661.4776.1

>prot_Ecto-sp13_S_contig16661.4776.1 ID=prot_Ecto-sp13_S_contig16661.4776.1|Name=mRNA_Ecto-sp13_S_contig16661.4776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MVAMDAGHLKGSWKGVMYVLCMHDSNNKIIHVSTVLADKENATNYKFLLQ
QTCRNEHMHRLLSSGEVTFFIDGHKESPAALRAVLPQAPWRACVRHLITN
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mRNA from alignment at Ecto-sp13_S_contig16661:3531..3833-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16661.4776.1 ID=mRNA_Ecto-sp13_S_contig16661.4776.1|Name=mRNA_Ecto-sp13_S_contig16661.4776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16661:3531..3833- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATGGTGGCCATGGACGCTGGCCACCTCAAGGGTTCGTGGAAGGGAGT
CATGTACGTCCTCTGCATGCACGACAGCAACAATAAGATCATCCACGTCA
GCACTGTACTTGCAGACAAGGAAAACGCGACGAACTACAAGTTCCTGCTC
CAGCAGACCTGCCGGAACGAGCACATGCATCGACTTCTTTCGTCCGGCGA
GGTGACATTCTTCATCGACGGTCACAAAGAATCACCGGCGGCCCTCAGGG
CGGTTCTACCGCAAGCGCCATGGCGTGCGTGCGTGAGGCACCTCATCACC
AAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16661:3531..3833-

>mRNA_Ecto-sp13_S_contig16661.4776.1 ID=mRNA_Ecto-sp13_S_contig16661.4776.1|Name=mRNA_Ecto-sp13_S_contig16661.4776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16661:3531..3833- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGCCATGGACGCTGGCCACCTCAAGGGTTCGTGGAAGGGAGTCAT
GTACGTCCTCTGCATGCACGACAGCAACAATAAGATCATCCACGTCAGCA
CTGTACTTGCAGACAAGGAAAACGCGACGAACTACAAGTTCCTGCTCCAG
CAGACCTGCCGGAACGAGCACATGCATCGACTTCTTTCGTCCGGCGAGGT
GACATTCTTCATCGACGGTCACAAAGAATCACCGGCGGCCCTCAGGGCGG
TTCTACCGCAAGCGCCATGGCGTGCGTGCGTGAGGCACCTCATCACCAAC
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