mRNA_Ecto-sp13_S_contig16661.4775.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig16661.4775.1
Unique Name	mRNA_Ecto-sp13_S_contig16661.4775.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig16661.4775.1 vs. uniprot
Match: A0A6H5K405_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K405_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 2.420e-66
Identity = 129/237 (54.43%), Postives = 132/237 (55.70%), Query Frame = -1

Query:   22 MVFLFQSSASESLMCPFSVVNVCCSQKREMDPYHFHIEIAEKTAEQLASNAELKKDCPAILVPFAAKFMEDERLLSLK*VLGQPRLVRSVFFPPLILRLRGRLGVVRPHRLGDPPVLSLSF*FHDLFVRFGCRFVCSALFTTSE*HLSFVDGTNSVFVCFLPFLLWFMALAPLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGRVECTCSVPTRFHLLCQDALAVLK 732
            MVFLF SSASESLMCPFSVV+VCCSQKREMDPYHFHIEIAEKTAEQLA+NAEL KDC A LVPFAAKFMEDERLLSL                                                                                                  +KHVKSMGLGTYL QEHGKSQYGNRVTIVLPDTEGKGGRVECTC VPTRFH LCQDALAVLK
Sbjct:    1 MVFLFNSSASESLMCPFSVVDVCCSQKREMDPYHFHIEIAEKTAEQLATNAELLKDCHANLVPFAAKFMEDERLLSL--------------------------------------------------------------------------------------------------NKHVKSMGLGTYLAQEHGKSQYGNRVTIVLPDTEGKGGRVECTCRVPTRFHHLCQDALAVLK 139

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BLAST of mRNA_Ecto-sp13_S_contig16661.4775.1 vs. uniprot
Match: A0A6H5KWZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWZ7_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 4.980e-63
Identity = 117/230 (50.87%), Postives = 124/230 (53.91%), Query Frame = -1

Query:    4 MCPFSVVNVCCSQKREMDPYHFHIEIAEKTAEQLASNAELKKDCPAILVPFAAKFMEDERLLSLK*VLGQPRLVRSVFFPPLILRLRGRLGVVRPHRLGDPPVLSLSF*FHDLFVRFGCRFVCSALFTTSE*HLSFVDGTNSVFVCFLPFLLWFMALAPLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGRVECTCSVPTRFHLLCQDALAVLKCKPPPS 693
            MCPFS+V+VCCSQKREMD YHFHIEI EKTA+QLA+NAEL KDC AILVPFAAKFMEDERL+SL                                                                                                  +KHVKSMGLGTYLVQEHGKSQ GNRVTIVLPDTEG GGRVECTC  PTRFHLLCQDA+AVLKCKPPPS
Sbjct:    1 MCPFSIVDVCCSQKREMDHYHFHIEIVEKTADQLATNAELLKDCDAILVPFAAKFMEDERLVSL--------------------------------------------------------------------------------------------------NKHVKSMGLGTYLVQEHGKSQCGNRVTIVLPDTEGNGGRVECTCRAPTRFHLLCQDAIAVLKCKPPPS 132

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BLAST of mRNA_Ecto-sp13_S_contig16661.4775.1 vs. uniprot
Match: A0A6H5K7Q3_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Q3_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 9.300e-56
Identity = 114/226 (50.44%), Postives = 120/226 (53.10%), Query Frame = -1

Query:    4 SVVNVCCSQKREMDPYHFHIEIAEKTAEQLASNAELKKDCPAILVPFAAKFMEDERLLSLK*VLGQPRLVRSVFFPPLILRLRGRLGVVRPHRLGDPPVLSLSF*FHDLFVRFGCRFVCSALFTTSE*HLSFVDGTNSVFVCFLPFLLWFMALAPLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGRVECTCSVPTRFHLLCQDALAVLKCKPPPS 681
            S ++V   QKREMDPYHFHIEIAEKTAEQLA+NAEL KDC AILVPFAAKFM+DERLLSL                                                                                                  +KHVKSMGLGTYLVQ HGK+QYGNRVTIVLPDTEGKGGRVECTC VPTRFHLLCQDALAVLKCKPPPS
Sbjct:  199 STISVVGHQKREMDPYHFHIEIAEKTAEQLATNAELLKDCHAILVPFAAKFMKDERLLSLS-------------------------------------------------------------------------------------------------NKHVKSMGLGTYLVQVHGKNQYGNRVTIVLPDTEGKGGRVECTCRVPTRFHLLCQDALAVLKCKPPPS 327

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BLAST of mRNA_Ecto-sp13_S_contig16661.4775.1 vs. uniprot
Match: A0A6H5KB34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB34_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 7.970e-47
Identity = 79/86 (91.86%), Postives = 80/86 (93.02%), Query Frame = -3

Query:  398 ETGNGPLSFPHRDCGENCGATRIECRTEEGLPCHPRSIRGQVHGGREVAQSQVSTGATTPGAFRVLPSVNSTAAWSVGCSTTPSVG 655
            ETGNGPLSFPHRDCGENCGATR ECRT EGLPCHPRSIRGQVHGGREVAQ  VSTGATTPGAF VL SV+STAAWSVGCSTTPSVG
Sbjct:   65 ETGNGPLSFPHRDCGENCGATRNECRTAEGLPCHPRSIRGQVHGGREVAQ--VSTGATTPGAFLVLSSVDSTAAWSVGCSTTPSVG 148

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BLAST of mRNA_Ecto-sp13_S_contig16661.4775.1 vs. uniprot
Match: D7G6Q0_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q0_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 5.290e-45
Identity = 105/220 (47.73%), Postives = 111/220 (50.45%), Query Frame = -1

Query:   22 SVVNVCCSQKREMDPYHFHIEIAEKTAEQLASNAELKKDCPAILVPFAAKFMEDERLLSLK*VLGQPRLVRSVFFPPLILRLRGRLGVVRPHRLGDPPVLSLSF*FHDLFVRFGCRFVCSALFTTSE*HLSFVDGTNSVFVCFLPFLLWFMALAPLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGRVECTCSVPTRFHLLCQDALAVLK 681
            S ++    Q REMDPYH HI IAEKTAEQLA+NAELKKD  AILVPFAAKFMEDERLLSL                                                                                                   KHVKS+GLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGRVECTCSVP+RFHLLCQD+LAVLK
Sbjct:  334 SSISAVGHQTREMDPYHLHIGIAEKTAEQLATNAELKKDSSAILVPFAAKFMEDERLLSLH--------------------------------------------------------------------------------------------------KHVKSLGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGRVECTCSVPSRFHLLCQDSLAVLK 455

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BLAST of mRNA_Ecto-sp13_S_contig16661.4775.1 vs. uniprot
Match: A0A6H5K7B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7B6_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 2.100e-43
Identity = 100/208 (48.08%), Postives = 103/208 (49.52%), Query Frame = -1

Query:   22 MDPYHFHIEIAEKTAEQLASNAELKKDCPAILVPFAAKFMEDERLLSLK*VLGQPRLVRSVFFPPLILRLRGRLGVVRPHRLGDPPVLSLSF*FHDLFVRFGCRFVCSALFTTSE*HLSFVDGTNSVFVCFLPFLLWFMALAPLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGRVECTCSVPTRFHLLCQDALAVLK 645
            MDPYHFHI IAEKTAEQLA+NAEL KD  AILVPFAAKFMEDERL+SL                                                                                                  +KHVKSMGLGTYLVQEHGKSQYGNRV IVLPDTEG GGRVECTC VPTRFHLLCQDALAVLK
Sbjct:    1 MDPYHFHIGIAEKTAEQLATNAELLKDGHAILVPFAAKFMEDERLISL--------------------------------------------------------------------------------------------------NKHVKSMGLGTYLVQEHGKSQYGNRVIIVLPDTEGNGGRVECTCRVPTRFHLLCQDALAVLK 110

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BLAST of mRNA_Ecto-sp13_S_contig16661.4775.1 vs. uniprot
Match: A0A6H5K4J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J8_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 7.480e-37
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = -1

Query:   22 MALAPLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGRVECTCSVPTRFHLLCQDALAVLK 231
            MALAPLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGG V+CTC VPTRFHLLCQDALAVLK
Sbjct:    1 MALAPLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGCVKCTCRVPTRFHLLCQDALAVLK 70

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BLAST of mRNA_Ecto-sp13_S_contig16661.4775.1 vs. uniprot
Match: A0A6H5K9J4_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J4_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.360e-33
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = -1

Query:   22 APLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGRVECTCSVPTRFHLLCQDALAVLK 222
            APLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGRVECTC VPTRFHLLC DALAVLK
Sbjct:  169 APLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGRVECTCRVPTRFHLLCHDALAVLK 235

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BLAST of mRNA_Ecto-sp13_S_contig16661.4775.1 vs. uniprot
Match: A0A6H5L9F2_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9F2_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 3.150e-32
Identity = 95/220 (43.18%), Postives = 101/220 (45.91%), Query Frame = -1

Query:   22 SVVNVCCSQKREMDPYHFHIEIAEKTAEQLASNAELKKDCPAILVPFAAKFMEDERLLSLK*VLGQPRLVRSVFFPPLILRLRGRLGVVRPHRLGDPPVLSLSF*FHDLFVRFGCRFVCSALFTTSE*HLSFVDGTNSVFVCFLPFLLWFMALAPLVGSKHVKSMGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGRVECTCSVPTRFHLLCQDALAVLK 681
            S ++    QKREMDPYHFHIEIAEKTAEQLA+NAEL KDC AILVPFAAKFMEDERLLSL                                                                TS                    + W  A AP               L +    SQYGNRVTIV+PDTEGKGGRVE TC V  RFHLLCQDALAVLK
Sbjct:  252 STISAVGHQKREMDPYHFHIEIAEKTAEQLATNAELLKDCHAILVPFAAKFMEDERLLSLN---------------------------------------------------------------TS--------------------IAW--AWAPT--------------LFRSTAMSQYGNRVTIVMPDTEGKGGRVESTCRVSARFHLLCQDALAVLK 372

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BLAST of mRNA_Ecto-sp13_S_contig16661.4775.1 vs. uniprot
Match: A0A6H5K6W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W8_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.020e-29
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = -1

Query:   22 SKHVKSMGLGTYLVQEHGKSQYGNRVTIVLPDTEGKGGRVECTCSVPTRFHLLCQDALAVLK 207
            S+HVKSMG+GTYLVQEHGKSQYGNRVTIVLP TEGKGGRVECTC VPTRFHLLCQDALAVLK
Sbjct:   18 SQHVKSMGVGTYLVQEHGKSQYGNRVTIVLPHTEGKGGRVECTCRVPTRFHLLCQDALAVLK 79

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig16661.4775.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig16661.4775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17


Match Name	E-value	Identity	Description
A0A6H5K405_9PHAE	2.420e-66	54.43	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KWZ7_9PHAE	4.980e-63	50.87	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K7Q3_9PHAE	9.300e-56	50.44	MULE domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A6H5KB34_9PHAE	7.970e-47	91.86	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G6Q0_ECTSI	5.290e-45	47.73	MULE domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A6H5K7B6_9PHAE	2.100e-43	48.08	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K4J8_9PHAE	7.480e-37	95.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K9J4_9PHAE	2.360e-33	97.01	MULE domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A6H5L9F2_9PHAE	3.150e-32	43.18	MULE domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A6H5K6W8_9PHAE	1.020e-29	93.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig16661	contig	Ecto-sp13_S_contig16661:1098..1937 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	840
Hectar predicted targeting category	other localisation
Exons	1
Cds size	447

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462873.8627512-UTR-Ecto-sp13_S_contig16661:1097..1284	1681462873.8627512-UTR-Ecto-sp13_S_contig16661:1097..1284	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig16661 1098..1284 +
1681462873.8822885-UTR-Ecto-sp13_S_contig16661:1731..1937	1681462873.8822885-UTR-Ecto-sp13_S_contig16661:1731..1937	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig16661 1732..1937 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462873.8732073-CDS-Ecto-sp13_S_contig16661:1284..1731	1681462873.8732073-CDS-Ecto-sp13_S_contig16661:1284..1731	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16661 1285..1731 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig16661.4775.1	prot_Ecto-sp13_S_contig16661.4775.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig16661 1285..1731 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig16661:1098..1937+
coding sequence from alignment at Ecto-sp13_S_contig16661:1098..1937+

protein sequence of mRNA_Ecto-sp13_S_contig16661.4775.1

>prot_Ecto-sp13_S_contig16661.4775.1 ID=prot_Ecto-sp13_S_contig16661.4775.1|Name=mRNA_Ecto-sp13_S_contig16661.4775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
MLLTCLLPTSGANAMNQRRKGRKQTKTEFVPSTKDRCHSLVVKSALHTKR
QPKRTNKSWNQNERDSTGGSPNRWGRTTPNRPRSRRINGGKNTERTRRGC
PSTYLRLSNLSSSMNLAANGTRMAGQSFFSSAFDASCSAVFSAISMWK*

mRNA from alignment at Ecto-sp13_S_contig16661:1098..1937+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig16661.4775.1 ID=mRNA_Ecto-sp13_S_contig16661.4775.1|Name=mRNA_Ecto-sp13_S_contig16661.4775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16661:1098..1937+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTCGATGGAGGAGGCTTACATTTCAACACCGCGAGGGCGTCCTGGCACA
GGAGGTGGAACCTGGTAGGGACGCTGCAGGTGCACTCGACGCGGCCACCC
TTCCCTTCCGTGTCCGGCAACACGATTGTCACCCTGTTGCCGTACTGGCT
CTTGCCGTGCTCCTGAACAAGGTAGGTGCCCAAGCCCATGCTCTTGACGT
GCTTGCTGCCGACGAGTGGGGCCAACGCCATGAACCAAAGAAGGAAGGGA
AGAAAGCAGACGAAAACTGAGTTTGTGCCGTCGACGAAAGACAGGTGTCA
TTCGCTGGTTGTAAAGAGTGCACTACACACGAAACGACAGCCAAAACGGA
CGAATAAATCATGGAATCAAAATGAGAGAGACAGCACGGGTGGATCACCC
AACCGATGGGGTCGTACTACACCCAACCGACCACGCAGCCGTAGAATTAA
CGGAGGGAAGAACACGGAACGCACCAGGCGTGGTTGCCCCAGTACTTACT
TGAGACTGAGCAACCTCTCGTCCTCCATGAACTTGGCCGCGAATGGAACG
AGGATGGCAGGGCAGTCCTTCTTCAGTTCGGCATTCGATGCGAGTTGCTC
CGCAGTTTTCTCCGCAATCTCGATGTGGAAATGATAAGGGTCCATTTCCC
GTTTCTGCGAGCAACAAACGTTAACAACGGAAAAGGGACACATCAACGAT
TCAGACGCTGACGACTGAAAAAGGAACACCATAAAAAGCTTGTAGCCGCA
CACACTGGTGCGTAGGGAAGGAAATCACAACACGCGGACAAGTGGCCGTT
GAAGAATCGGGACGGCAGGATTCCTGACAATAAATTGGGT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16661:1098..1937+

>mRNA_Ecto-sp13_S_contig16661.4775.1 ID=mRNA_Ecto-sp13_S_contig16661.4775.1|Name=mRNA_Ecto-sp13_S_contig16661.4775.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16661:1098..1937+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCTTGACGTGCTTGCTGCCGACGAGTGGGGCCAACGCCATGAACCA
AAGAAGGAAGGGAAGAAAGCAGACGAAAACTGAGTTTGTGCCGTCGACGA
AAGACAGGTGTCATTCGCTGGTTGTAAAGAGTGCACTACACACGAAACGA
CAGCCAAAACGGACGAATAAATCATGGAATCAAAATGAGAGAGACAGCAC
GGGTGGATCACCCAACCGATGGGGTCGTACTACACCCAACCGACCACGCA
GCCGTAGAATTAACGGAGGGAAGAACACGGAACGCACCAGGCGTGGTTGC
CCCAGTACTTACTTGAGACTGAGCAACCTCTCGTCCTCCATGAACTTGGC
CGCGAATGGAACGAGGATGGCAGGGCAGTCCTTCTTCAGTTCGGCATTCG
ATGCGAGTTGCTCCGCAGTTTTCTCCGCAATCTCGATGTGGAAATGA