mRNA_Ecto-sp13_S_contig16657.4772.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16657.4772.1
Unique NamemRNA_Ecto-sp13_S_contig16657.4772.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16657.4772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16657contigEcto-sp13_S_contig16657:1709..3199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size729
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_001350.1
Cds size729
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.7046492-CDS-Ecto-sp13_S_contig16657:1708..18071681462873.7046492-CDS-Ecto-sp13_S_contig16657:1708..1807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16657 1709..1807 -
1681462873.715945-CDS-Ecto-sp13_S_contig16657:2278..27181681462873.715945-CDS-Ecto-sp13_S_contig16657:2278..2718Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16657 2279..2718 -
1681462873.7242882-CDS-Ecto-sp13_S_contig16657:3009..31991681462873.7242882-CDS-Ecto-sp13_S_contig16657:3009..3199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16657 3010..3199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16657.4772.1prot_Ecto-sp13_S_contig16657.4772.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16657 1709..3199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16657.4772.1

>prot_Ecto-sp13_S_contig16657.4772.1 ID=prot_Ecto-sp13_S_contig16657.4772.1|Name=mRNA_Ecto-sp13_S_contig16657.4772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=243bp
MALDRFLHHEIEPAAQRIFDAAVLDHTEACRLLDGKPVPAFGGGGGGGGA
QAASSKHQQEGRGGRQGGVTGGAFDRPRIIDFTGGGGGGGGGGRSYSARS
TTIPGRRRLLVEDNSRKREFQEKEGGGGHRGGSRGSQGERAVAAGSGGFA
GDDVLAGAASCGRSERQIGGGGGVVATATAAAAAAAAAKRSDDLEEEDHD
LWDAPLPGRVRATDISAKIVGLSSEIRRRAEADAGREGHRKQ*
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mRNA from alignment at Ecto-sp13_S_contig16657:1709..3199-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16657.4772.1 ID=mRNA_Ecto-sp13_S_contig16657.4772.1|Name=mRNA_Ecto-sp13_S_contig16657.4772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1491bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16657:1709..3199- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCTGGATCGCTTTCTGCACCACGAAATCGAGCCGGCCGCCCAACG
CATTTTCGACGCGGCCGTGTTGGATCACACGGAAGCCTGCCGCCTCCTGG
ATGGAAAGCCCGTGCCGGCTTTCGGCGGCGGCGGCGGCGGCGGCGGCGCA
CAAGCCGCCTCCTCGAAACACCAGCAGGAGGGCCGGGGGGGTTCAACAGG
AGGGAGCAAGCCGACCATCGTTAGTAGCAACAACGACATTCGGAGCGACC
CCGCAGCAGCAGCAGCAGCAGCAGCAGGAGATGACGACGTCGGCGTTGTG
ACGGGCAAAGCTCCAGGCACTGCGCCTACGACCGCAACAACGCTGGCGGC
TGCAGTGTCGGGGGCGAGGGGAAATGCTACCCCTACCGAGCCGCGGCAAC
GGGCAAAGAGGGCCGGGGTGATCCAGCCGCCGCCCCCGCCGTCGACGTCG
ACCAGTGTGCGCGCTAGCTTGCCGGTGAAAGGAAGGCAGGGCGGTGTCAC
CGGTGGTGCGTTCGATCGTCCTCGCATCATCGATTTTACCGGCGGCGGCG
GCGGCGGCGGTGGTGGTGGCCGCAGTTATAGTGCTCGCTCGACGACCATA
CCCGGTAGGCGCCGCCTCCTCGTTGAAGACAACTCCAGGAAGAGGGAGTT
CCAGGAGAAGGAAGGGGGAGGGGGGCACAGGGGTGGATCGCGAGGTTCGC
AAGGAGAGCGGGCGGTGGCTGCGGGTTCTGGTGGCTTTGCCGGCGACGAT
GTCCTGGCGGGAGCGGCGTCATGTGGACGAAGCGAGAGGCAGATAGGCGG
TGGCGGCGGTGTTGTTGCTACTGCTACTGCTGCTGCTGCTGCTGCTGCTG
CTGCTAAGAGGAGTGACGACCTCGAGGAAGAAGACCATGACTTGTGGGAC
GCGCCGCTTCCTGGCAGGGTGGTGAGAAATAAATACATTTTGGGGGAGTT
GGGTGTGCGGAAGGGGTCGTGCCACGTTTCGCGTGCTTTTGGAAGTATGC
ATACTACGCCCCGACATGAACCAGTCGAGACGGCTAGAGCACCGGCGCGG
ATTCCAGGCAGCAGCTTTACGTGTTACGACAGGAGGTCACCGGTGAAAAG
TTCTCCTCCATATAGAATAACATCGGTGTTTTCAAGTCAGTTCTTGTGTC
CTTACAACGTGGGAGAAACCAGTGGCATCATCTCCCGCGGGTCGGTGTCG
GCCATCTTCCCATCCTCCTTTCTTTTCTCAGGGGAAAAGGCTCTTCTCTC
CCATGTCTTCTTGTTGCCGCAGCTGAGAACCCTCTTCCAAGACCATTCGA
AGTCCCAAGTTTCCCTGCTGTATTGCTGTATCCATCGGCCTCTCTCTCTC
TCTCTCTCTCTCTCTATGTTCCCGCTGAACTCGTTGTCATAGCGCGCGAC
CGATATCAGCGCCAAGATCGTGGGACTGTCATCCGAGATCAGGCGTCGGG
CAGAAGCCGACGCCGGAAGAGAAGGTCATCGCAAGCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16657:1709..3199-

>mRNA_Ecto-sp13_S_contig16657.4772.1 ID=mRNA_Ecto-sp13_S_contig16657.4772.1|Name=mRNA_Ecto-sp13_S_contig16657.4772.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16657:1709..3199- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCTGGATCGCTTTCTGCACCACGAAATCGAGCCGGCCGCCCAACG
CATTTTCGACGCGGCCGTGTTGGATCACACGGAAGCCTGCCGCCTCCTGG
ATGGAAAGCCCGTGCCGGCTTTCGGCGGCGGCGGCGGCGGCGGCGGCGCA
CAAGCCGCCTCCTCGAAACACCAGCAGGAGGGCCGGGGGGGAAGGCAGGG
CGGTGTCACCGGTGGTGCGTTCGATCGTCCTCGCATCATCGATTTTACCG
GCGGCGGCGGCGGCGGCGGTGGTGGTGGCCGCAGTTATAGTGCTCGCTCG
ACGACCATACCCGGTAGGCGCCGCCTCCTCGTTGAAGACAACTCCAGGAA
GAGGGAGTTCCAGGAGAAGGAAGGGGGAGGGGGGCACAGGGGTGGATCGC
GAGGTTCGCAAGGAGAGCGGGCGGTGGCTGCGGGTTCTGGTGGCTTTGCC
GGCGACGATGTCCTGGCGGGAGCGGCGTCATGTGGACGAAGCGAGAGGCA
GATAGGCGGTGGCGGCGGTGTTGTTGCTACTGCTACTGCTGCTGCTGCTG
CTGCTGCTGCTGCTAAGAGGAGTGACGACCTCGAGGAAGAAGACCATGAC
TTGTGGGACGCGCCGCTTCCTGGCAGGGTGCGCGCGACCGATATCAGCGC
CAAGATCGTGGGACTGTCATCCGAGATCAGGCGTCGGGCAGAAGCCGACG
CCGGAAGAGAAGGTCATCGCAAGCAGTAG
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