mRNA_Ecto-sp13_S_contig16656.4771.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16656.4771.1
Unique NamemRNA_Ecto-sp13_S_contig16656.4771.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16656.4771.1 vs. uniprot
Match: D7FUJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ3_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.950e-29
Identity = 72/110 (65.45%), Postives = 79/110 (71.82%), Query Frame = 2 
Query:  194 TDLHRPCSRSRPLAQAVKAEA--VAVAAGGPRQAVTTKAEEGGEKGPHQL*--------ATRAVRKRRLLPQDYDSTAIVAVPVPATASSGVG*QPTRRSHLRTTAAPVF 493
            T  HRPCSRSRPL QAV+AEA  +A AAG PR AVT+KAE+G +KG  QL         ATRA +KRRL P D D TAIVA PVP TASSG G +PTRRSHLRT  APVF
Sbjct:    3 TGQHRPCSRSRPLPQAVEAEAEGLAAAAGRPRLAVTSKAEKGDKKGADQLXXXXXXXXEATRAAQKRRLRPLDTDRTAIVAAPVPPTASSGFGRRPTRRSHLRTKTAPVF 112
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BLAST of mRNA_Ecto-sp13_S_contig16656.4771.1 vs. uniprot
Match: D7G3L4_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L4_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.040e-19
Identity = 74/126 (58.73%), Postives = 78/126 (61.90%), Query Frame = 1 
Query:   16 RVFTCGATGLSGVFHQW--RRGER-----RELSGD*DASAIAGGVVSSRARCGAAGTGRHGSLDGDDRLASAVLTIEAPSPSSQGXXXXXXXXXXXXXXXXXXXXXXX--ERPPSALSDKSCPETT 366
            R   CGA  LSGVFH+W  RR  R     R  S   ++ AIAGGVVSS ARCGAAGTGRHGSLDGDDR  SA LTIEAP+     XXXXXXXXX                ERP SA S KSCPETT
Sbjct: 1316 RTRMCGARVLSGVFHKWAARRAARAFWRLRTTSTTGNSPAIAGGVVSSCARCGAAGTGRHGSLDGDDRSTSAALTIEAPTXXXXXXXXXXXXXXWTSPLSGYNQSGEGGRERPRSAGSGKSCPETT 1441
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BLAST of mRNA_Ecto-sp13_S_contig16656.4771.1 vs. uniprot
Match: A0A6H5L7S3_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S3_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 5.760e-18
Identity = 55/85 (64.71%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:   16 RVFTCGATGLSGVFHQW--RRG-----ERRELSGD*DASAIAGGVVSSRARCGAAGTGRHGSLDGDDRLASAVLTIEAPSPSSQG 249
            R   CGA  LSGVFH+W  RR        +  S   ++SAIAG VVSS ARCGAAGTGR GSLDGDDR  SAVLTIEAP PSSQG
Sbjct: 1317 RTRMCGARVLSGVFHKWAARRAAGAFWRLKTTSTTGNSSAIAGSVVSSCARCGAAGTGRQGSLDGDDRPTSAVLTIEAPIPSSQG 1401
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BLAST of mRNA_Ecto-sp13_S_contig16656.4771.1 vs. uniprot
Match: A0A6H5L985_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L985_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.640e-14
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 3 
Query:  624 MTSPPGGSSSIAWWNGGTDAVTPSNSTQMGVADGSGLIAQGDVGVGGGDNKRRFL 788
            MTSPPGGS SIAWWNG +D V P  STQ+G+A GSGLIA G VGVGGGD  R F 
Sbjct:    1 MTSPPGGSFSIAWWNGSSDPVKPVKSTQVGMAGGSGLIAPGVVGVGGGDIARGFF 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16656.4771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FUJ3_ECTSI2.950e-2965.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3L4_ECTSI2.040e-1958.73PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L7S3_9PHAE5.760e-1864.71PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L985_9PHAE3.640e-1470.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16656contigEcto-sp13_S_contig16656:1861..3205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size802
Hectar predicted targeting categoryother localisation
Exons2
Cds size237
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.6376662-UTR-Ecto-sp13_S_contig16656:1860..23221681462873.6376662-UTR-Ecto-sp13_S_contig16656:1860..2322Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16656 1861..2322 -
1681462873.6692772-UTR-Ecto-sp13_S_contig16656:3102..32051681462873.6692772-UTR-Ecto-sp13_S_contig16656:3102..3205Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16656 3103..3205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.6496236-CDS-Ecto-sp13_S_contig16656:2322..25581681462873.6496236-CDS-Ecto-sp13_S_contig16656:2322..2558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16656 2323..2558 -
1681462873.659523-CDS-Ecto-sp13_S_contig16656:3101..31021681462873.659523-CDS-Ecto-sp13_S_contig16656:3101..3102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16656 3102..3102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16656.4771.1prot_Ecto-sp13_S_contig16656.4771.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16656 2323..3102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16656.4771.1

>prot_Ecto-sp13_S_contig16656.4771.1 ID=prot_Ecto-sp13_S_contig16656.4771.1|Name=mRNA_Ecto-sp13_S_contig16656.4771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MLPPSLEASCHPALAVEQLEPAATAAWMATTDLHRPCSRSRPLAQAVKAE
AVAVAAGGPRQAVTTKAEEGGEKGPHQL*
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mRNA from alignment at Ecto-sp13_S_contig16656:1861..3205-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16656.4771.1 ID=mRNA_Ecto-sp13_S_contig16656.4771.1|Name=mRNA_Ecto-sp13_S_contig16656.4771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16656:1861..3205- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCACTCCGAGCTGGCGTGTGTTCACGTGCGGCGCGACGGGTCTGTCAGG
CGTATTCCACCAGTGGCGGCGAGGAGAGCGGCGGGAGCTTTCTGGAGACT
GAGAGTGAGACCTTGTTGTGCAGAATAACCGAAGGCCGAATGTTTTGATT
TTGGGCGGGGTGGAGGTCGATAGTGCCCGCGGGAGTGTTGACGATAACGG
TCGGCAAGAGTAGCAACCTGTGAAGGTTCTTCGGGTGAAGAGGTACACAG
TCCTCGCCAACCGCAAGGCGGTTGACCTTGTAGGCGTTCATAGGCATGGT
GGTGGTTTGATGGTGCATTTCTTTTGCACCAGTCGATGACCACAGGGGGA
CATCCTCCAGCGTCCAGCCGCTGCCGGCATGTCGTGCAATGCTTTCTTGT
TTCCTCGTTGTTATGATTGCCTTTCGCTTTTATGCGTCACGCCAGTGTTG
TTGTTGGTCGTCTTCCTCCCGTATCGCCCCAACCCATAGCCCCAAGCGGG
TGCGCACAGCTGCCGGCTATTCTACTCTGCATTCGGCATTGCCTGACGTT
TGCGGTACTGCGCTCTGTTCGGATTTTCACCGCAATTTGTTTGTGACCGC
GGTGTTTACTGTTTCCCCGCGGCACAAACAACGGCGACGACCAGCAGTGC
TTCCGCCATCGCTGGAGGCGTCGTGTCATCCCGCGCTCGCTGTGGAGCAG
CTGGAACCGGCCGCCACGGCAGCCTGGATGGCGACGACCGACTTGCATCG
GCCGTGCTCACGATCGAGGCCCCTAGCCCAAGCAGTCAAGGCGGAGGCGG
TGGCGGTAGCCGCCGGGGGTCCCCGCCAGGCGGTTACCACCAAAGCGGAG
GAGGGGGGCGAGAAAGGCCCCCATCAGCTCTAAGCGACAAGAGCTGTCCG
GAAACGACGGCTCCTGCCGCAAGACTACGACAGCACCGCGATCGTAGCAG
TACCGGTGCCGGCGACGGCTTCCTCCGGGGTCGGGTGACAGCCAACGCGC
CGCTCACATCTCCGGACGACGGCAGCCCCGGTGTTTCGACTTCGGAGGTG
GGCACGGAGGAGCGAGGGGGTATCAGTACCGCCGCCGGAGCCGTGCATGT
GGGAAGAATGCGAGCGGGAGGTCTCCTTCCCCACCGCCGTCACCGGCCTC
GTCGCGGGCTCGAAGCATGACGAGCCCTCCCGGAGGAAGCTCCAGCATCG
CCTGGTGGAACGGCGGTACTGATGCCGTCACACCGTCGAATTCCACCCAG
ATGGGTGTGGCCGACGGCAGCGGGCTAATCGCTCAGGGAGACGTCGGGGT
TGGCGGTGGTGACAACAAGCGGAGATTTTTGTAGCACCGCTTCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16656:1861..3205-

>mRNA_Ecto-sp13_S_contig16656.4771.1 ID=mRNA_Ecto-sp13_S_contig16656.4771.1|Name=mRNA_Ecto-sp13_S_contig16656.4771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16656:1861..3205- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTCCGCCATCGCTGGAGGCGTCGTGTCATCCCGCGCTCGCTGTGGA
GCAGCTGGAACCGGCCGCCACGGCAGCCTGGATGGCGACGACCGACTTGC
ATCGGCCGTGCTCACGATCGAGGCCCCTAGCCCAAGCAGTCAAGGCGGAG
GCGGTGGCGGTAGCCGCCGGGGGTCCCCGCCAGGCGGTTACCACCAAAGC
GGAGGAGGGGGGCGAGAAAGGCCCCCATCAGCTCTAA
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