mRNA_Ecto-sp13_S_contig16656.4770.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16656.4770.1
Unique NamemRNA_Ecto-sp13_S_contig16656.4770.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16656.4770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16656contigEcto-sp13_S_contig16656:909..1541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size634
Hectar predicted targeting categoryother localisation
Exons1
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.6013062-CDS-Ecto-sp13_S_contig16656:908..14331681462873.6013062-CDS-Ecto-sp13_S_contig16656:908..1433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16656 909..1433 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.610132-UTR-Ecto-sp13_S_contig16656:1433..15411681462873.610132-UTR-Ecto-sp13_S_contig16656:1433..1541Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16656 1434..1541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16656.4770.1prot_Ecto-sp13_S_contig16656.4770.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16656 909..1433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16656.4770.1

>prot_Ecto-sp13_S_contig16656.4770.1 ID=prot_Ecto-sp13_S_contig16656.4770.1|Name=mRNA_Ecto-sp13_S_contig16656.4770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp
FVFQNLSSAKVHDYSTLKGLLWRTAVDIIEGHQGLPYLETKRQAPPHRGQ
RTPTTPACTKKADANHEQYCIDQVRPHGIPTAIAGNDTSAHAISLYLTGN
QAHDCVRHVLLVSQTILRCVRIRSPWFFGTTAPITKPHGIVTPAGTTFSI
TQRFDPAVRMQTTTHFQPPMNVHL*
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mRNA from alignment at Ecto-sp13_S_contig16656:909..1541+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16656.4770.1 ID=mRNA_Ecto-sp13_S_contig16656.4770.1|Name=mRNA_Ecto-sp13_S_contig16656.4770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16656:909..1541+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGTCTTCCAGAATTTGTCGTCAGCGAAAGTGCATGACTACTCGACGCT
TAAAGGCCTCCTGTGGCGCACTGCTGTCGATATTATTGAGGGTCATCAAG
GCCTACCGTACTTGGAAACCAAACGACAAGCGCCGCCACACCGTGGGCAA
AGAACTCCAACAACACCTGCTTGTACAAAGAAAGCCGACGCGAACCACGA
ACAGTATTGCATCGACCAGGTTCGACCTCACGGTATCCCCACTGCAATAG
CTGGCAACGATACTTCAGCGCATGCCATTTCCCTGTATCTTACCGGAAAC
CAAGCACACGACTGTGTCCGCCATGTACTTCTTGTCAGTCAAACTATCTT
GCGGTGTGTCCGGATACGCAGTCCTTGGTTCTTTGGCACAACGGCTCCCA
TCACAAAACCTCACGGAATTGTTACACCCGCCGGTACCACCTTCTCCATC
ACGCAAAGGTTCGACCCCGCCGTCCGTATGCAAACCACCACTCATTTCCA
ACCACCGATGAATGTACACCTATGAACCCTATCACATAAATGAAGGGCTT
ACACCTCCGCCTCTTCGTCACTCAAGAGCCCGCCAAGAATCGCCACAACC
AACCGACACCTCCAGCCGAACCCGAAGCCTACT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16656:909..1541+

>mRNA_Ecto-sp13_S_contig16656.4770.1 ID=mRNA_Ecto-sp13_S_contig16656.4770.1|Name=mRNA_Ecto-sp13_S_contig16656.4770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16656:909..1541+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGTCTTCCAGAATTTGTCGTCAGCGAAAGTGCATGACTACTCGACGCT
TAAAGGCCTCCTGTGGCGCACTGCTGTCGATATTATTGAGGGTCATCAAG
GCCTACCGTACTTGGAAACCAAACGACAAGCGCCGCCACACCGTGGGCAA
AGAACTCCAACAACACCTGCTTGTACAAAGAAAGCCGACGCGAACCACGA
ACAGTATTGCATCGACCAGGTTCGACCTCACGGTATCCCCACTGCAATAG
CTGGCAACGATACTTCAGCGCATGCCATTTCCCTGTATCTTACCGGAAAC
CAAGCACACGACTGTGTCCGCCATGTACTTCTTGTCAGTCAAACTATCTT
GCGGTGTGTCCGGATACGCAGTCCTTGGTTCTTTGGCACAACGGCTCCCA
TCACAAAACCTCACGGAATTGTTACACCCGCCGGTACCACCTTCTCCATC
ACGCAAAGGTTCGACCCCGCCGTCCGTATGCAAACCACCACTCATTTCCA
ACCACCGATGAATGTACACCTATGA
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