mRNA_Ecto-sp13_S_contig16649.4765.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16649.4765.1
Unique NamemRNA_Ecto-sp13_S_contig16649.4765.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16649.4765.1 vs. uniprot
Match: D8LGI4_ECTSI (Cupin_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI4_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.390e-31
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1
Query:   40 QTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDGTVVQV 207
            QTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDGTVVQ+
Sbjct:   79 QTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDGTVVQL 134          
BLAST of mRNA_Ecto-sp13_S_contig16649.4765.1 vs. uniprot
Match: A0A2M8L7A3_9BACT (Cupin domain-containing protein n=2 Tax=Candidatus Shapirobacteria TaxID=1752721 RepID=A0A2M8L7A3_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 3.480e-9
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   40 QTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDGTVVQ 204
            Q +I NG++P LTGF++AVF PG   E H H +M EV++  EG+ T+ + G  V+
Sbjct:   23 QVLIKNGEIPQLTGFSQAVFKPGQACEEHRHPTMYEVYFLLEGEATLFISGREVK 77          
BLAST of mRNA_Ecto-sp13_S_contig16649.4765.1 vs. uniprot
Match: UPI001639F968 (cupin domain-containing protein n=1 Tax=Croceivirga lutea TaxID=1775167 RepID=UPI001639F968)

HSP 1 Score: 55.8 bits (133), Expect = 2.720e-8
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   40 QTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDGTVV 201
            +TMI +G++P L  F  AVF PG+EV LH H +M EVFY  +GK    V+  V+
Sbjct:   23 KTMISSGEIPQLMMFGSAVFKPGEEVNLHKHDTMVEVFYIQKGKAEFTVENEVL 76          
BLAST of mRNA_Ecto-sp13_S_contig16649.4765.1 vs. uniprot
Match: A0A845ZUA0_9CYAN (Cupin domain-containing protein n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A845ZUA0_9CYAN)

HSP 1 Score: 55.1 bits (131), Expect = 5.440e-8
Identity = 23/52 (44.23%), Postives = 31/52 (59.62%), Query Frame = 1
Query:   40 QTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDGT 195
            Q ++ +G +PHLT F +A FSPG     H H  M EVF+   G G I +DG+
Sbjct:   23 QVLLRSGDLPHLTNFAQARFSPGQVAAAHAHADMGEVFFVEAGSGIIRIDGS 74          
BLAST of mRNA_Ecto-sp13_S_contig16649.4765.1 vs. uniprot
Match: UPI00105C3C86 (cupin domain-containing protein n=1 Tax=Paraglaciecola marina TaxID=2500157 RepID=UPI00105C3C86)

HSP 1 Score: 55.1 bits (131), Expect = 5.440e-8
Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   40 QTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDG 192
            + ++ NG +PH+T F++AVF PG+    H H+ M EVF+   G G I V+G
Sbjct:   23 KVLVSNGDIPHITYFSKAVFPPGELANAHSHSDMTEVFFIESGTGVITVNG 73          
BLAST of mRNA_Ecto-sp13_S_contig16649.4765.1 vs. uniprot
Match: A0A1C0UUG5_9CYAN (Cupin n=4 Tax=Limnothrix TaxID=132605 RepID=A0A1C0UUG5_9CYAN)

HSP 1 Score: 54.7 bits (130), Expect = 8.200e-8
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   40 QTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDG 192
            Q ++  G +PHLT F+RA F+PG     H H+ M EVF+   G+GT+ VDG
Sbjct:   23 QVLLRQGDLPHLTNFSRACFAPGQVSPGHAHSDMHEVFFIEAGQGTMIVDG 73          
BLAST of mRNA_Ecto-sp13_S_contig16649.4765.1 vs. uniprot
Match: A0A7C3LG09_9CHLR (Cupin domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3LG09_9CHLR)

HSP 1 Score: 54.3 bits (129), Expect = 1.090e-7
Identity = 23/52 (44.23%), Postives = 31/52 (59.62%), Query Frame = 1
Query:   40 QTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDGT 195
            + M+  G +PH+T F++AVF+PG     H H  M EVF    G G I +DGT
Sbjct:   23 KVMLRQGDLPHITNFSQAVFAPGQTAVPHSHPDMAEVFLVLSGSGVITIDGT 74          
BLAST of mRNA_Ecto-sp13_S_contig16649.4765.1 vs. uniprot
Match: A0A0D6KW53_9CYAN (Putative cupin domain protein n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A0D6KW53_9CYAN)

HSP 1 Score: 54.3 bits (129), Expect = 1.210e-7
Identity = 23/51 (45.10%), Postives = 31/51 (60.78%), Query Frame = 1
Query:   40 QTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDG 192
            + M+  G +PHLT F++A F+PG     H H  M EVF+   G+G I VDG
Sbjct:   23 KVMLRLGDLPHLTNFSQARFTPGQSASAHAHQDMSEVFFVEAGEGVIHVDG 73          
BLAST of mRNA_Ecto-sp13_S_contig16649.4765.1 vs. uniprot
Match: UPI0019B14937 (Cupin domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=UPI0019B14937)

HSP 1 Score: 54.3 bits (129), Expect = 1.370e-7
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1
Query:   40 QTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDGT 195
            + M+  G +PHLT F++A F+PG     H H +M EVF+   G+GTI +D T
Sbjct:   29 KVMLQWGDLPHLTNFSQACFTPGQSASAHSHANMCEVFFVESGEGTIWIDDT 80          
BLAST of mRNA_Ecto-sp13_S_contig16649.4765.1 vs. uniprot
Match: A0A2E7EDW5_9GAMM (Cupin n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A2E7EDW5_9GAMM)

HSP 1 Score: 53.9 bits (128), Expect = 1.540e-7
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 1
Query:   40 QTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDGTVV 201
            Q +I NGQ+PHLT F+RAVF  G+    H H  M EVF+   G G + V+  V+
Sbjct:   23 QLIIPNGQIPHLTNFSRAVFPLGEVAHAHNHRDMTEVFFVESGLGEMVVNDKVI 76          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16649.4765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LGI4_ECTSI1.390e-3198.21Cupin_2 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A2M8L7A3_9BACT3.480e-945.45Cupin domain-containing protein n=2 Tax=Candidatus... [more]
UPI001639F9682.720e-848.15cupin domain-containing protein n=1 Tax=Croceivirg... [more]
A0A845ZUA0_9CYAN5.440e-844.23Cupin domain-containing protein n=1 Tax=Leptolyngb... [more]
UPI00105C3C865.440e-843.14cupin domain-containing protein n=1 Tax=Paraglacie... [more]
A0A1C0UUG5_9CYAN8.200e-847.06Cupin n=4 Tax=Limnothrix TaxID=132605 RepID=A0A1C0... [more]
A0A7C3LG09_9CHLR1.090e-744.23Cupin domain-containing protein n=1 Tax=Anaeroline... [more]
A0A0D6KW53_9CYAN1.210e-745.10Putative cupin domain protein n=5 Tax=Cyanobacteri... [more]
UPI0019B149371.370e-744.23Cupin domain-containing protein n=1 Tax=Verrucomic... [more]
A0A2E7EDW5_9GAMM1.540e-746.30Cupin n=1 Tax=Oceanospirillaceae bacterium TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16649contigEcto-sp13_S_contig16649:1783..2007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start0
Seed ortholog score60.8
Seed ortholog evalue3e-07
Seed eggNOG ortholog313628.LNTAR_14762
Model size225
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Cupin 2, conserved barrel domain protein
EggNOG OGsCOG0662@1,COG0662@2
Cds size225
COG Functional cat.G
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.3334522-CDS-Ecto-sp13_S_contig16649:1782..20071681462873.3334522-CDS-Ecto-sp13_S_contig16649:1782..2007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16649 1783..2007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16649.4765.1prot_Ecto-sp13_S_contig16649.4765.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16649 1783..2007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16649.4765.1

>prot_Ecto-sp13_S_contig16649.4765.1 ID=prot_Ecto-sp13_S_contig16649.4765.1|Name=mRNA_Ecto-sp13_S_contig16649.4765.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
LPVYIPTERNRDTQTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEV
FYAAEGKGTIEVDGTVVQVNCSRR*
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mRNA from alignment at Ecto-sp13_S_contig16649:1783..2007-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16649.4765.1 ID=mRNA_Ecto-sp13_S_contig16649.4765.1|Name=mRNA_Ecto-sp13_S_contig16649.4765.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16649:1783..2007- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCCTGTCTACATCCCAACCGAACGAAACCGGGACACGCAGACGATGAT CCTCAACGGCCAGGTGCCGCACTTGACGGGGTTCACCCGGGCTGTCTTCT CGCCGGGGGACGAGGTCGAGCTCCACTGGCATACGAGCATGGATGAGGTG TTCTACGCGGCAGAGGGGAAGGGCACGATCGAAGTCGACGGCACGGTTGT GCAGGTGAACTGTAGTCGTCGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16649:1783..2007-

>mRNA_Ecto-sp13_S_contig16649.4765.1 ID=mRNA_Ecto-sp13_S_contig16649.4765.1|Name=mRNA_Ecto-sp13_S_contig16649.4765.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16649:1783..2007- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCCTGTCTACATCCCAACCGAACGAAACCGGGACACGCAGACGATGAT
CCTCAACGGCCAGGTGCCGCACTTGACGGGGTTCACCCGGGCTGTCTTCT
CGCCGGGGGACGAGGTCGAGCTCCACTGGCATACGAGCATGGATGAGGTG
TTCTACGCGGCAGAGGGGAAGGGCACGATCGAAGTCGACGGCACGGTTGT
GCAGGTGAACTGTAGTCGTCGTTGA
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